ToRQuEMaDA: tool for retrieving queried Eubacteria, metadata and dereplicating assemblies

TQMD is a tool for high-performance computing clusters which downloads, stores and produces lists of dereplicated prokaryotic genomes. It has been developed to counter the ever-growing number of prokaryotic genomes and their uneven taxonomic distribution. It is based on word-based alignment-free met...

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Veröffentlicht in:	PeerJ (San Francisco, CA) CA), 2021-05, Vol.9, p.e11348-e11348, Article 11348
Hauptverfasser:	Leonard, Raphael R., Leleu, Marie, Van Vlierberghe, Mick, Cornet, Luc, Kerff, Frederic, Baurain, Denis
Format:	Artikel
Sprache:	eng
Schlagworte:	Alignment-free methods Bacteria Biochemistry, biophysics & molecular biology Biochimie, biophysique & biologie moléculaire Bioinformatics Data compression Dereplication Dictionaries Genetics & genetic processes Genome quality Genome selection Genomes Genomics Génétique & processus génétiques Information theory Life sciences Metadata Metagenomics Microbiologie Microbiology Multidisciplinary Sciences NCBI RefSeq Phylogenomics Problem solving Prokaryotes Science & Technology Science & Technology - Other Topics Sciences du vivant Singularity Software Taxonomy Work stations
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