Structure analysis of yeast glutaredoxin Grx6 protein produced in Escherichia coli
Background Grx6 is a yeast Golgi/endoplasmic reticulum protein involved in iron-sulfur binding that belongs to monothiol glutaredoxin-protein family. Grx6 has been biochemically characterized previously. Grx6 contains a conserved cysteine residue (Cys-136). Depending on the active-site sequences, Gr...
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creator | Abdalla, Mohnad Eltayb, Wafa Ali El-Arabey, Amr Ahmed Mo, Raihan Dafaalla, T. I. M Hamouda, Hamed I Bhat, Eijaz Ahmed Awadasseid, Annoor Ali, Hassan Abdellha Ahmed |
description | Background Grx6 is a yeast Golgi/endoplasmic reticulum protein involved in iron-sulfur binding that belongs to monothiol glutaredoxin-protein family. Grx6 has been biochemically characterized previously. Grx6 contains a conserved cysteine residue (Cys-136). Depending on the active-site sequences, Grxs can be classified to classic dithiol Grxs with a CXXC motif known as classes II and monothiol Grxs with a CXXS motif known as classes I, and Grx6 belongs to the class I with a CSYS motif. Results Our results showed how the loop between the N-terminal and C-terminal can affect the stability. When Grx6 was incubated with FeSO.sub.4*7H.sub.2O and (NH.sub.4).sub.2Fe(SO.sub.4).sub.2*6H.sub.2O, a disulfide bond was formed between the cysteine 136 and glutathione, and the concentration of dimer and tetramer was increased. The results presented various levels of stability of Grx6 with mutant and deleted amino acids. We also highlighted the difference between the monomer and dimer forms of the Grx6, in addition to comparison of the Fe-S cluster positions among holo forms of poplar Grx-C1, human Grx2 and Saccharomyces cerevisiae Grx6. Conclusions In this paper, we used a combination of spectroscopic and proteomic techniques to analyse the sequence and to determine the affected mutations and deletions in the stability of Grx6. Our results have increased the knowledge about the differences between monomer and dimer structures in cellular processes and proteins whose roles and functions depend on YCA1 in yeast. Keywords: Grx6, Purification, Saccharomyces cerevisiae, Fe-S, Crystallization |
doi_str_mv | 10.1186/s41021-018-0103-6 |
format | Report |
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I. M ; Hamouda, Hamed I ; Bhat, Eijaz Ahmed ; Awadasseid, Annoor ; Ali, Hassan Abdellha Ahmed</creator><creatorcontrib>Abdalla, Mohnad ; Eltayb, Wafa Ali ; El-Arabey, Amr Ahmed ; Mo, Raihan ; Dafaalla, T. I. M ; Hamouda, Hamed I ; Bhat, Eijaz Ahmed ; Awadasseid, Annoor ; Ali, Hassan Abdellha Ahmed</creatorcontrib><description>Background Grx6 is a yeast Golgi/endoplasmic reticulum protein involved in iron-sulfur binding that belongs to monothiol glutaredoxin-protein family. Grx6 has been biochemically characterized previously. Grx6 contains a conserved cysteine residue (Cys-136). Depending on the active-site sequences, Grxs can be classified to classic dithiol Grxs with a CXXC motif known as classes II and monothiol Grxs with a CXXS motif known as classes I, and Grx6 belongs to the class I with a CSYS motif. Results Our results showed how the loop between the N-terminal and C-terminal can affect the stability. When Grx6 was incubated with FeSO.sub.4*7H.sub.2O and (NH.sub.4).sub.2Fe(SO.sub.4).sub.2*6H.sub.2O, a disulfide bond was formed between the cysteine 136 and glutathione, and the concentration of dimer and tetramer was increased. The results presented various levels of stability of Grx6 with mutant and deleted amino acids. We also highlighted the difference between the monomer and dimer forms of the Grx6, in addition to comparison of the Fe-S cluster positions among holo forms of poplar Grx-C1, human Grx2 and Saccharomyces cerevisiae Grx6. Conclusions In this paper, we used a combination of spectroscopic and proteomic techniques to analyse the sequence and to determine the affected mutations and deletions in the stability of Grx6. Our results have increased the knowledge about the differences between monomer and dimer structures in cellular processes and proteins whose roles and functions depend on YCA1 in yeast. Keywords: Grx6, Purification, Saccharomyces cerevisiae, Fe-S, Crystallization</description><identifier>ISSN: 1880-7046</identifier><identifier>DOI: 10.1186/s41021-018-0103-6</identifier><language>eng</language><publisher>BioMed Central Ltd</publisher><subject>Analysis ; Cystine ; Escherichia coli ; Glutathione ; Protein binding ; Saccharomyces cerevisiae</subject><ispartof>Genes and Environment, 2018, Vol.40 (1)</ispartof><rights>COPYRIGHT 2018 BioMed Central Ltd.</rights><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>776,780,860,4476,27902</link.rule.ids></links><search><creatorcontrib>Abdalla, Mohnad</creatorcontrib><creatorcontrib>Eltayb, Wafa Ali</creatorcontrib><creatorcontrib>El-Arabey, Amr Ahmed</creatorcontrib><creatorcontrib>Mo, Raihan</creatorcontrib><creatorcontrib>Dafaalla, T. I. M</creatorcontrib><creatorcontrib>Hamouda, Hamed I</creatorcontrib><creatorcontrib>Bhat, Eijaz Ahmed</creatorcontrib><creatorcontrib>Awadasseid, Annoor</creatorcontrib><creatorcontrib>Ali, Hassan Abdellha Ahmed</creatorcontrib><title>Structure analysis of yeast glutaredoxin Grx6 protein produced in Escherichia coli</title><title>Genes and Environment</title><description>Background Grx6 is a yeast Golgi/endoplasmic reticulum protein involved in iron-sulfur binding that belongs to monothiol glutaredoxin-protein family. Grx6 has been biochemically characterized previously. Grx6 contains a conserved cysteine residue (Cys-136). Depending on the active-site sequences, Grxs can be classified to classic dithiol Grxs with a CXXC motif known as classes II and monothiol Grxs with a CXXS motif known as classes I, and Grx6 belongs to the class I with a CSYS motif. Results Our results showed how the loop between the N-terminal and C-terminal can affect the stability. When Grx6 was incubated with FeSO.sub.4*7H.sub.2O and (NH.sub.4).sub.2Fe(SO.sub.4).sub.2*6H.sub.2O, a disulfide bond was formed between the cysteine 136 and glutathione, and the concentration of dimer and tetramer was increased. The results presented various levels of stability of Grx6 with mutant and deleted amino acids. We also highlighted the difference between the monomer and dimer forms of the Grx6, in addition to comparison of the Fe-S cluster positions among holo forms of poplar Grx-C1, human Grx2 and Saccharomyces cerevisiae Grx6. Conclusions In this paper, we used a combination of spectroscopic and proteomic techniques to analyse the sequence and to determine the affected mutations and deletions in the stability of Grx6. Our results have increased the knowledge about the differences between monomer and dimer structures in cellular processes and proteins whose roles and functions depend on YCA1 in yeast. Keywords: Grx6, Purification, Saccharomyces cerevisiae, Fe-S, Crystallization</description><subject>Analysis</subject><subject>Cystine</subject><subject>Escherichia coli</subject><subject>Glutathione</subject><subject>Protein binding</subject><subject>Saccharomyces cerevisiae</subject><issn>1880-7046</issn><fulltext>true</fulltext><rsrctype>report</rsrctype><creationdate>2018</creationdate><recordtype>report</recordtype><sourceid/><recordid>eNqVi00KwjAUhLNQ8PcA7nKB6nttjHUp4s9a3UtIX9tIbCRJQW9vFl5AhuGbGRjGFghLxFKugkDIMQMsk6HI5ICNsSwh24CQIzYJ4QEgthvAMbtco-917D1x1Sn7CSZwV_MPqRB5Y_uoPFXubTp-8m_JX95FSiWx6jVVPOVD0C15o1ujuHbWzNiwVjbQ_McpWx4Pt_05a5Slu-lqF73SSRU9jXYd1Sbtu7XYosixkMXfhy-3lU0Y</recordid><startdate>20180806</startdate><enddate>20180806</enddate><creator>Abdalla, Mohnad</creator><creator>Eltayb, Wafa Ali</creator><creator>El-Arabey, Amr Ahmed</creator><creator>Mo, Raihan</creator><creator>Dafaalla, T. I. M</creator><creator>Hamouda, Hamed I</creator><creator>Bhat, Eijaz Ahmed</creator><creator>Awadasseid, Annoor</creator><creator>Ali, Hassan Abdellha Ahmed</creator><general>BioMed Central Ltd</general><scope/></search><sort><creationdate>20180806</creationdate><title>Structure analysis of yeast glutaredoxin Grx6 protein produced in Escherichia coli</title><author>Abdalla, Mohnad ; Eltayb, Wafa Ali ; El-Arabey, Amr Ahmed ; Mo, Raihan ; Dafaalla, T. I. M ; Hamouda, Hamed I ; Bhat, Eijaz Ahmed ; Awadasseid, Annoor ; Ali, Hassan Abdellha Ahmed</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-gale_infotracacademiconefile_A5491421363</frbrgroupid><rsrctype>reports</rsrctype><prefilter>reports</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Analysis</topic><topic>Cystine</topic><topic>Escherichia coli</topic><topic>Glutathione</topic><topic>Protein binding</topic><topic>Saccharomyces cerevisiae</topic><toplevel>online_resources</toplevel><creatorcontrib>Abdalla, Mohnad</creatorcontrib><creatorcontrib>Eltayb, Wafa Ali</creatorcontrib><creatorcontrib>El-Arabey, Amr Ahmed</creatorcontrib><creatorcontrib>Mo, Raihan</creatorcontrib><creatorcontrib>Dafaalla, T. I. M</creatorcontrib><creatorcontrib>Hamouda, Hamed I</creatorcontrib><creatorcontrib>Bhat, Eijaz Ahmed</creatorcontrib><creatorcontrib>Awadasseid, Annoor</creatorcontrib><creatorcontrib>Ali, Hassan Abdellha Ahmed</creatorcontrib></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Abdalla, Mohnad</au><au>Eltayb, Wafa Ali</au><au>El-Arabey, Amr Ahmed</au><au>Mo, Raihan</au><au>Dafaalla, T. I. M</au><au>Hamouda, Hamed I</au><au>Bhat, Eijaz Ahmed</au><au>Awadasseid, Annoor</au><au>Ali, Hassan Abdellha Ahmed</au><format>book</format><genre>unknown</genre><ristype>RPRT</ristype><atitle>Structure analysis of yeast glutaredoxin Grx6 protein produced in Escherichia coli</atitle><jtitle>Genes and Environment</jtitle><date>2018-08-06</date><risdate>2018</risdate><volume>40</volume><issue>1</issue><issn>1880-7046</issn><abstract>Background Grx6 is a yeast Golgi/endoplasmic reticulum protein involved in iron-sulfur binding that belongs to monothiol glutaredoxin-protein family. Grx6 has been biochemically characterized previously. Grx6 contains a conserved cysteine residue (Cys-136). Depending on the active-site sequences, Grxs can be classified to classic dithiol Grxs with a CXXC motif known as classes II and monothiol Grxs with a CXXS motif known as classes I, and Grx6 belongs to the class I with a CSYS motif. Results Our results showed how the loop between the N-terminal and C-terminal can affect the stability. When Grx6 was incubated with FeSO.sub.4*7H.sub.2O and (NH.sub.4).sub.2Fe(SO.sub.4).sub.2*6H.sub.2O, a disulfide bond was formed between the cysteine 136 and glutathione, and the concentration of dimer and tetramer was increased. The results presented various levels of stability of Grx6 with mutant and deleted amino acids. We also highlighted the difference between the monomer and dimer forms of the Grx6, in addition to comparison of the Fe-S cluster positions among holo forms of poplar Grx-C1, human Grx2 and Saccharomyces cerevisiae Grx6. Conclusions In this paper, we used a combination of spectroscopic and proteomic techniques to analyse the sequence and to determine the affected mutations and deletions in the stability of Grx6. Our results have increased the knowledge about the differences between monomer and dimer structures in cellular processes and proteins whose roles and functions depend on YCA1 in yeast. Keywords: Grx6, Purification, Saccharomyces cerevisiae, Fe-S, Crystallization</abstract><pub>BioMed Central Ltd</pub><doi>10.1186/s41021-018-0103-6</doi></addata></record> |
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source | Springer Nature - Complete Springer Journals; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central; PubMed Central Open Access; Springer Nature OA Free Journals |
subjects | Analysis Cystine Escherichia coli Glutathione Protein binding Saccharomyces cerevisiae |
title | Structure analysis of yeast glutaredoxin Grx6 protein produced in Escherichia coli |
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