SRAP analysis of the genetic diversity of wild castor

Castor bean is an important seed oil crop. Castor oil is a highly demanded oil for several industrial uses. Currently, castor bean varieties suffer from low productivity and high risk of insect pests and diseases. It is in urgent need to mine elite genes from wild materials for castor breeding. 29 p...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:PloS one 2019-07, Vol.14 (7), p.e0219667
Hauptverfasser: Agyenim-Boateng, Kwadwo Gyapong, Lu, Jiannong, Shi, Yuzhen, Zhang, Dan, Yin, Xuegui
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue 7
container_start_page e0219667
container_title PloS one
container_volume 14
creator Agyenim-Boateng, Kwadwo Gyapong
Lu, Jiannong
Shi, Yuzhen
Zhang, Dan
Yin, Xuegui
description Castor bean is an important seed oil crop. Castor oil is a highly demanded oil for several industrial uses. Currently, castor bean varieties suffer from low productivity and high risk of insect pests and diseases. It is in urgent need to mine elite genes from wild materials for castor breeding. 29 pairs of polymorphic SRAP primers out of 361 pairs were used to analyse the genetic diversity of 473 wild castor materials from South China. 203 bands were amplified by the 29 pairs of primers, of which 169 bands were polymorphic, with a polymorphic percentage of 83.25%. With an average number of alleles per locus (A.sub.p) of 1.801, average number of effective alleles per locus (A.sub.e) of 1.713 and average percentage of polymorphic loci (P) of 90.04%, these primers were proven to be useful and effective. Nei' genetic distance between the materials ranged from 1.04 to 25.02, with an average of 13.03. At the genetic distance of 25.02, the materials clustered into two major groups, consistent with the result of population structure analysis. However, more subgroups existed between 5.21 and 13.32. Although not all the materials from the same region were clustered in the same group, an obvious trend existed where the groups were related to regions to a great extent. Based on multiple indices, the genetic diversity of materials from Hainan was the lowest. However, there was not much difference between West Guangdong and Guangxi, although the former was slightly higher. Moderate genetic differentiation was observed in wild materials in South China. The genetic differentiation mainly occurred within population, with maximum differentiation in Guangxi, followed by West Guangdong and the minimum in Hainan. Nonetheless, there was an extensive geneflow between populations. The above results provided a direction for the conservation and breeding application of these materials.
doi_str_mv 10.1371/journal.pone.0219667
format Article
fullrecord <record><control><sourceid>gale</sourceid><recordid>TN_cdi_gale_incontextgauss_ISR_A592987692</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A592987692</galeid><sourcerecordid>A592987692</sourcerecordid><originalsourceid>FETCH-LOGICAL-g992-b5aac5410fb4f1dc0d0c1aeae34765f648883ab7f4b516c623e907b273d9e2f03</originalsourceid><addsrcrecordid>eNqFzM1LwzAYBvAgCs7pf-ChJ8FDaz6apDmO4cdgMNmG15Kmb9qM0kiTqvvvVfRQT57eB57f8yJ0TXBGmCR3Bz8Ove6yV99DhilRQsgTNCOK0VRQzE4n-RxdhHDAmLNCiBniu-3iOdFf62NwIfE2iS0kDfQQnUlq9wZDcPH4Xby7rk6MDtEPl-jM6i7A1e-do_3D_X75lK43j6vlYp02StG04lobnhNsq9yS2uAaG6JBA8ul4FbkRVEwXUmbV5wIIygDhWVFJasVUIvZHN3-vG10B6Xrje8jfMRGjyGUq922XHBFVSGFov_YzctfezOxLegutsF3Y3S-D1P4CSfFZmM</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>SRAP analysis of the genetic diversity of wild castor</title><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Public Library of Science (PLoS)</source><source>PubMed Central</source><source>Free Full-Text Journals in Chemistry</source><creator>Agyenim-Boateng, Kwadwo Gyapong ; Lu, Jiannong ; Shi, Yuzhen ; Zhang, Dan ; Yin, Xuegui</creator><creatorcontrib>Agyenim-Boateng, Kwadwo Gyapong ; Lu, Jiannong ; Shi, Yuzhen ; Zhang, Dan ; Yin, Xuegui</creatorcontrib><description>Castor bean is an important seed oil crop. Castor oil is a highly demanded oil for several industrial uses. Currently, castor bean varieties suffer from low productivity and high risk of insect pests and diseases. It is in urgent need to mine elite genes from wild materials for castor breeding. 29 pairs of polymorphic SRAP primers out of 361 pairs were used to analyse the genetic diversity of 473 wild castor materials from South China. 203 bands were amplified by the 29 pairs of primers, of which 169 bands were polymorphic, with a polymorphic percentage of 83.25%. With an average number of alleles per locus (A.sub.p) of 1.801, average number of effective alleles per locus (A.sub.e) of 1.713 and average percentage of polymorphic loci (P) of 90.04%, these primers were proven to be useful and effective. Nei' genetic distance between the materials ranged from 1.04 to 25.02, with an average of 13.03. At the genetic distance of 25.02, the materials clustered into two major groups, consistent with the result of population structure analysis. However, more subgroups existed between 5.21 and 13.32. Although not all the materials from the same region were clustered in the same group, an obvious trend existed where the groups were related to regions to a great extent. Based on multiple indices, the genetic diversity of materials from Hainan was the lowest. However, there was not much difference between West Guangdong and Guangxi, although the former was slightly higher. Moderate genetic differentiation was observed in wild materials in South China. The genetic differentiation mainly occurred within population, with maximum differentiation in Guangxi, followed by West Guangdong and the minimum in Hainan. Nonetheless, there was an extensive geneflow between populations. The above results provided a direction for the conservation and breeding application of these materials.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0219667</identifier><language>eng</language><publisher>Public Library of Science</publisher><subject>Alleles ; Analysis ; Biodiversity ; Castor beans ; Castor oil ; EDTA ; Genes ; Genetic aspects ; Genetic polymorphisms ; Genetic research ; Insect pests ; Musical groups ; Povidone ; Production management ; Seeds</subject><ispartof>PloS one, 2019-07, Vol.14 (7), p.e0219667</ispartof><rights>COPYRIGHT 2019 Public Library of Science</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,777,781,861,27905,27906</link.rule.ids></links><search><creatorcontrib>Agyenim-Boateng, Kwadwo Gyapong</creatorcontrib><creatorcontrib>Lu, Jiannong</creatorcontrib><creatorcontrib>Shi, Yuzhen</creatorcontrib><creatorcontrib>Zhang, Dan</creatorcontrib><creatorcontrib>Yin, Xuegui</creatorcontrib><title>SRAP analysis of the genetic diversity of wild castor</title><title>PloS one</title><description>Castor bean is an important seed oil crop. Castor oil is a highly demanded oil for several industrial uses. Currently, castor bean varieties suffer from low productivity and high risk of insect pests and diseases. It is in urgent need to mine elite genes from wild materials for castor breeding. 29 pairs of polymorphic SRAP primers out of 361 pairs were used to analyse the genetic diversity of 473 wild castor materials from South China. 203 bands were amplified by the 29 pairs of primers, of which 169 bands were polymorphic, with a polymorphic percentage of 83.25%. With an average number of alleles per locus (A.sub.p) of 1.801, average number of effective alleles per locus (A.sub.e) of 1.713 and average percentage of polymorphic loci (P) of 90.04%, these primers were proven to be useful and effective. Nei' genetic distance between the materials ranged from 1.04 to 25.02, with an average of 13.03. At the genetic distance of 25.02, the materials clustered into two major groups, consistent with the result of population structure analysis. However, more subgroups existed between 5.21 and 13.32. Although not all the materials from the same region were clustered in the same group, an obvious trend existed where the groups were related to regions to a great extent. Based on multiple indices, the genetic diversity of materials from Hainan was the lowest. However, there was not much difference between West Guangdong and Guangxi, although the former was slightly higher. Moderate genetic differentiation was observed in wild materials in South China. The genetic differentiation mainly occurred within population, with maximum differentiation in Guangxi, followed by West Guangdong and the minimum in Hainan. Nonetheless, there was an extensive geneflow between populations. The above results provided a direction for the conservation and breeding application of these materials.</description><subject>Alleles</subject><subject>Analysis</subject><subject>Biodiversity</subject><subject>Castor beans</subject><subject>Castor oil</subject><subject>EDTA</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Genetic polymorphisms</subject><subject>Genetic research</subject><subject>Insect pests</subject><subject>Musical groups</subject><subject>Povidone</subject><subject>Production management</subject><subject>Seeds</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><recordid>eNqFzM1LwzAYBvAgCs7pf-ChJ8FDaz6apDmO4cdgMNmG15Kmb9qM0kiTqvvvVfRQT57eB57f8yJ0TXBGmCR3Bz8Ove6yV99DhilRQsgTNCOK0VRQzE4n-RxdhHDAmLNCiBniu-3iOdFf62NwIfE2iS0kDfQQnUlq9wZDcPH4Xby7rk6MDtEPl-jM6i7A1e-do_3D_X75lK43j6vlYp02StG04lobnhNsq9yS2uAaG6JBA8ul4FbkRVEwXUmbV5wIIygDhWVFJasVUIvZHN3-vG10B6Xrje8jfMRGjyGUq922XHBFVSGFov_YzctfezOxLegutsF3Y3S-D1P4CSfFZmM</recordid><startdate>20190711</startdate><enddate>20190711</enddate><creator>Agyenim-Boateng, Kwadwo Gyapong</creator><creator>Lu, Jiannong</creator><creator>Shi, Yuzhen</creator><creator>Zhang, Dan</creator><creator>Yin, Xuegui</creator><general>Public Library of Science</general><scope>IOV</scope><scope>ISR</scope></search><sort><creationdate>20190711</creationdate><title>SRAP analysis of the genetic diversity of wild castor</title><author>Agyenim-Boateng, Kwadwo Gyapong ; Lu, Jiannong ; Shi, Yuzhen ; Zhang, Dan ; Yin, Xuegui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-g992-b5aac5410fb4f1dc0d0c1aeae34765f648883ab7f4b516c623e907b273d9e2f03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Alleles</topic><topic>Analysis</topic><topic>Biodiversity</topic><topic>Castor beans</topic><topic>Castor oil</topic><topic>EDTA</topic><topic>Genes</topic><topic>Genetic aspects</topic><topic>Genetic polymorphisms</topic><topic>Genetic research</topic><topic>Insect pests</topic><topic>Musical groups</topic><topic>Povidone</topic><topic>Production management</topic><topic>Seeds</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Agyenim-Boateng, Kwadwo Gyapong</creatorcontrib><creatorcontrib>Lu, Jiannong</creatorcontrib><creatorcontrib>Shi, Yuzhen</creatorcontrib><creatorcontrib>Zhang, Dan</creatorcontrib><creatorcontrib>Yin, Xuegui</creatorcontrib><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Agyenim-Boateng, Kwadwo Gyapong</au><au>Lu, Jiannong</au><au>Shi, Yuzhen</au><au>Zhang, Dan</au><au>Yin, Xuegui</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>SRAP analysis of the genetic diversity of wild castor</atitle><jtitle>PloS one</jtitle><date>2019-07-11</date><risdate>2019</risdate><volume>14</volume><issue>7</issue><spage>e0219667</spage><pages>e0219667-</pages><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Castor bean is an important seed oil crop. Castor oil is a highly demanded oil for several industrial uses. Currently, castor bean varieties suffer from low productivity and high risk of insect pests and diseases. It is in urgent need to mine elite genes from wild materials for castor breeding. 29 pairs of polymorphic SRAP primers out of 361 pairs were used to analyse the genetic diversity of 473 wild castor materials from South China. 203 bands were amplified by the 29 pairs of primers, of which 169 bands were polymorphic, with a polymorphic percentage of 83.25%. With an average number of alleles per locus (A.sub.p) of 1.801, average number of effective alleles per locus (A.sub.e) of 1.713 and average percentage of polymorphic loci (P) of 90.04%, these primers were proven to be useful and effective. Nei' genetic distance between the materials ranged from 1.04 to 25.02, with an average of 13.03. At the genetic distance of 25.02, the materials clustered into two major groups, consistent with the result of population structure analysis. However, more subgroups existed between 5.21 and 13.32. Although not all the materials from the same region were clustered in the same group, an obvious trend existed where the groups were related to regions to a great extent. Based on multiple indices, the genetic diversity of materials from Hainan was the lowest. However, there was not much difference between West Guangdong and Guangxi, although the former was slightly higher. Moderate genetic differentiation was observed in wild materials in South China. The genetic differentiation mainly occurred within population, with maximum differentiation in Guangxi, followed by West Guangdong and the minimum in Hainan. Nonetheless, there was an extensive geneflow between populations. The above results provided a direction for the conservation and breeding application of these materials.</abstract><pub>Public Library of Science</pub><doi>10.1371/journal.pone.0219667</doi><tpages>e0219667</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1932-6203
ispartof PloS one, 2019-07, Vol.14 (7), p.e0219667
issn 1932-6203
1932-6203
language eng
recordid cdi_gale_incontextgauss_ISR_A592987692
source DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Public Library of Science (PLoS); PubMed Central; Free Full-Text Journals in Chemistry
subjects Alleles
Analysis
Biodiversity
Castor beans
Castor oil
EDTA
Genes
Genetic aspects
Genetic polymorphisms
Genetic research
Insect pests
Musical groups
Povidone
Production management
Seeds
title SRAP analysis of the genetic diversity of wild castor
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-18T13%3A03%3A30IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=SRAP%20analysis%20of%20the%20genetic%20diversity%20of%20wild%20castor&rft.jtitle=PloS%20one&rft.au=Agyenim-Boateng,%20Kwadwo%20Gyapong&rft.date=2019-07-11&rft.volume=14&rft.issue=7&rft.spage=e0219667&rft.pages=e0219667-&rft.issn=1932-6203&rft.eissn=1932-6203&rft_id=info:doi/10.1371/journal.pone.0219667&rft_dat=%3Cgale%3EA592987692%3C/gale%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rft_galeid=A592987692&rfr_iscdi=true