Altered Expression of Hypoxia-Inducible Factor-1[alpha]
Tissue hypoxia induces reprogramming of cell metabolism and may result in normal cell transformation and cancer progression. Hypoxia-inducible factor 1-alpha (HIF-1[alpha]), the key transcription factor, plays an important role in gastric cancer development and progression. This study aimed to inves...
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description | Tissue hypoxia induces reprogramming of cell metabolism and may result in normal cell transformation and cancer progression. Hypoxia-inducible factor 1-alpha (HIF-1[alpha]), the key transcription factor, plays an important role in gastric cancer development and progression. This study aimed to investigate the underlying regulatory signaling pathway in gastric cancer using gastric cancer tissue specimens. The integration of gene expression profile and transcriptional regulatory element database (TRED) was pursued to identify HIF-1[alpha] â NF[kappa]B1 [right arrow] BRCA1 [right arrow] STAT3 [left arrow] STAT1 gene pathways and their regulated genes. The data showed that there were 82 differentially expressed genes that could be regulated by these five transcription factors in gastric cancer tissues and these genes formed 95 regulation modes, among which seven genes (MMP1, TIMP1, TLR2, FCGR3A, IRF1, FAS, and TFF3) were hub molecules that are regulated at least by two of these five transcription factors simultaneously and were associated with hypoxia, inflammation, and immune disorder. Real-Time PCR and western blot showed increasing of HIF-1[alpha] in mRNA and protein levels as well as TIMP1, TFF3 in mRNA levels in gastric cancer tissues. The data are the first study to demonstrate HIF-1[alpha]-regulated transcription factors and their corresponding network genes in gastric cancer. Further study with a larger sample size and more functional experiments is needed to confirm these data and then translate into clinical biomarker discovery and treatment strategy for gastric cancer. |
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Hypoxia-inducible factor 1-alpha (HIF-1[alpha]), the key transcription factor, plays an important role in gastric cancer development and progression. This study aimed to investigate the underlying regulatory signaling pathway in gastric cancer using gastric cancer tissue specimens. The integration of gene expression profile and transcriptional regulatory element database (TRED) was pursued to identify HIF-1[alpha] â NF[kappa]B1 [right arrow] BRCA1 [right arrow] STAT3 [left arrow] STAT1 gene pathways and their regulated genes. The data showed that there were 82 differentially expressed genes that could be regulated by these five transcription factors in gastric cancer tissues and these genes formed 95 regulation modes, among which seven genes (MMP1, TIMP1, TLR2, FCGR3A, IRF1, FAS, and TFF3) were hub molecules that are regulated at least by two of these five transcription factors simultaneously and were associated with hypoxia, inflammation, and immune disorder. Real-Time PCR and western blot showed increasing of HIF-1[alpha] in mRNA and protein levels as well as TIMP1, TFF3 in mRNA levels in gastric cancer tissues. The data are the first study to demonstrate HIF-1[alpha]-regulated transcription factors and their corresponding network genes in gastric cancer. Further study with a larger sample size and more functional experiments is needed to confirm these data and then translate into clinical biomarker discovery and treatment strategy for gastric cancer.</description><identifier>ISSN: 1932-6203</identifier><identifier>EISSN: 1932-6203</identifier><identifier>DOI: 10.1371/journal.pone.0099835</identifier><language>eng</language><publisher>Public Library of Science</publisher><subject>Cancer ; Cancer genetics ; Development and progression ; Gene expression ; Genes ; Genetic aspects ; Physiological aspects ; RNA ; Stomach cancer</subject><ispartof>PloS one, 2014-06, Vol.9 (6)</ispartof><rights>COPYRIGHT 2014 Public Library of Science</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,860,27903,27904</link.rule.ids></links><search><creatorcontrib>Wang, Jihan</creatorcontrib><creatorcontrib>Ni, Zhaohui</creatorcontrib><creatorcontrib>Duan, Zipeng</creatorcontrib><creatorcontrib>Wang, Guoqing</creatorcontrib><creatorcontrib>Li, Fan</creatorcontrib><title>Altered Expression of Hypoxia-Inducible Factor-1[alpha]</title><title>PloS one</title><description>Tissue hypoxia induces reprogramming of cell metabolism and may result in normal cell transformation and cancer progression. Hypoxia-inducible factor 1-alpha (HIF-1[alpha]), the key transcription factor, plays an important role in gastric cancer development and progression. This study aimed to investigate the underlying regulatory signaling pathway in gastric cancer using gastric cancer tissue specimens. The integration of gene expression profile and transcriptional regulatory element database (TRED) was pursued to identify HIF-1[alpha] â NF[kappa]B1 [right arrow] BRCA1 [right arrow] STAT3 [left arrow] STAT1 gene pathways and their regulated genes. The data showed that there were 82 differentially expressed genes that could be regulated by these five transcription factors in gastric cancer tissues and these genes formed 95 regulation modes, among which seven genes (MMP1, TIMP1, TLR2, FCGR3A, IRF1, FAS, and TFF3) were hub molecules that are regulated at least by two of these five transcription factors simultaneously and were associated with hypoxia, inflammation, and immune disorder. Real-Time PCR and western blot showed increasing of HIF-1[alpha] in mRNA and protein levels as well as TIMP1, TFF3 in mRNA levels in gastric cancer tissues. The data are the first study to demonstrate HIF-1[alpha]-regulated transcription factors and their corresponding network genes in gastric cancer. Further study with a larger sample size and more functional experiments is needed to confirm these data and then translate into clinical biomarker discovery and treatment strategy for gastric cancer.</description><subject>Cancer</subject><subject>Cancer genetics</subject><subject>Development and progression</subject><subject>Gene expression</subject><subject>Genes</subject><subject>Genetic aspects</subject><subject>Physiological aspects</subject><subject>RNA</subject><subject>Stomach cancer</subject><issn>1932-6203</issn><issn>1932-6203</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2014</creationdate><recordtype>article</recordtype><recordid>eNqFz09LwzAABfAgCs7pN_DQk-ChNf-bHMvYXGEw0OFFpKRp0naEpjQt1G-voId68vTe4ceDB8A9ggkiKXo6-2nolEt635kEQikFYRdghSTBMceQXC76NbgJ4QwhI4LzFUgzN5rBVNF27gcTQuu7yNto_9n7uVVx3lWTbktnop3Sox9i9K5c36iPW3BllQvm7jfX4LTbnjb7-HB8zjfZIa6llDFjtNSaUg2hllAQTYVgxGLBYCl4WZVEqMpQZjW3QqQolZRorqS2giiMOVmDx5_ZWjlTtJ323WjmsVZTCEX--lJkFAnGMIXyH3t8-2sfFrYxyo1N8G4av_-HJfwC08FmdQ</recordid><startdate>20140613</startdate><enddate>20140613</enddate><creator>Wang, Jihan</creator><creator>Ni, Zhaohui</creator><creator>Duan, Zipeng</creator><creator>Wang, Guoqing</creator><creator>Li, Fan</creator><general>Public Library of Science</general><scope>IOV</scope><scope>ISR</scope></search><sort><creationdate>20140613</creationdate><title>Altered Expression of Hypoxia-Inducible Factor-1[alpha]</title><author>Wang, Jihan ; Ni, Zhaohui ; Duan, Zipeng ; Wang, Guoqing ; Li, Fan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-g999-554bcc44c00c9083c48853f2850b86bdb38ade45fc6f88717943c6a9cf83a2263</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2014</creationdate><topic>Cancer</topic><topic>Cancer genetics</topic><topic>Development and progression</topic><topic>Gene expression</topic><topic>Genes</topic><topic>Genetic aspects</topic><topic>Physiological aspects</topic><topic>RNA</topic><topic>Stomach cancer</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Jihan</creatorcontrib><creatorcontrib>Ni, Zhaohui</creatorcontrib><creatorcontrib>Duan, Zipeng</creatorcontrib><creatorcontrib>Wang, Guoqing</creatorcontrib><creatorcontrib>Li, Fan</creatorcontrib><collection>Gale In Context: Opposing Viewpoints</collection><collection>Gale In Context: Science</collection><jtitle>PloS one</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Jihan</au><au>Ni, Zhaohui</au><au>Duan, Zipeng</au><au>Wang, Guoqing</au><au>Li, Fan</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Altered Expression of Hypoxia-Inducible Factor-1[alpha]</atitle><jtitle>PloS one</jtitle><date>2014-06-13</date><risdate>2014</risdate><volume>9</volume><issue>6</issue><issn>1932-6203</issn><eissn>1932-6203</eissn><abstract>Tissue hypoxia induces reprogramming of cell metabolism and may result in normal cell transformation and cancer progression. Hypoxia-inducible factor 1-alpha (HIF-1[alpha]), the key transcription factor, plays an important role in gastric cancer development and progression. This study aimed to investigate the underlying regulatory signaling pathway in gastric cancer using gastric cancer tissue specimens. The integration of gene expression profile and transcriptional regulatory element database (TRED) was pursued to identify HIF-1[alpha] â NF[kappa]B1 [right arrow] BRCA1 [right arrow] STAT3 [left arrow] STAT1 gene pathways and their regulated genes. The data showed that there were 82 differentially expressed genes that could be regulated by these five transcription factors in gastric cancer tissues and these genes formed 95 regulation modes, among which seven genes (MMP1, TIMP1, TLR2, FCGR3A, IRF1, FAS, and TFF3) were hub molecules that are regulated at least by two of these five transcription factors simultaneously and were associated with hypoxia, inflammation, and immune disorder. Real-Time PCR and western blot showed increasing of HIF-1[alpha] in mRNA and protein levels as well as TIMP1, TFF3 in mRNA levels in gastric cancer tissues. The data are the first study to demonstrate HIF-1[alpha]-regulated transcription factors and their corresponding network genes in gastric cancer. Further study with a larger sample size and more functional experiments is needed to confirm these data and then translate into clinical biomarker discovery and treatment strategy for gastric cancer.</abstract><pub>Public Library of Science</pub><doi>10.1371/journal.pone.0099835</doi></addata></record> |
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subjects | Cancer Cancer genetics Development and progression Gene expression Genes Genetic aspects Physiological aspects RNA Stomach cancer |
title | Altered Expression of Hypoxia-Inducible Factor-1[alpha] |
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