Phylogenetic analysis and evolution of RNase P RNA in proteobacteria
The secondary structures of the eubacterial RNase P RNAs are being elucidated by a phylogenetic comparative approach. Sequences of genes encoding RNase P RNA from each of the recognized subgroups (alpha, beta, gamma, and delta) of the proteobacteria have now been determined. These sequences allow th...
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| Veröffentlicht in: | Journal of Bacteriology 1991-06, Vol.173 (12), p.3855-3863 |
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| creator | Brown, J.W. (Indiana University, Bloomington, IN) Haas, E.S James, B.D Hunt, D.A Pace, N.R |
| description | The secondary structures of the eubacterial RNase P RNAs are being elucidated by a phylogenetic comparative approach. Sequences of genes encoding RNase P RNA from each of the recognized subgroups (alpha, beta, gamma, and delta) of the proteobacteria have now been determined. These sequences allow the refinement, to nearly the base pair level, of the phylogenetic model for RNase P RNA secondary structure. Evolutionary change among the RNase P RNAs was found to occur primarily in four discrete structural domains that are peripheral to a highly conserved core structure. The new sequences were used to examine critically the proposed similarity (C. Guerrier-Takada, N. Lumelsky, and S. Altman, Science 246:1578-1584, 1989) between a portion of RNase P RNA and the "exit site" of the 23S rRNA of Escherichia coli. Phylogenetic comparisons indicate that these sequences are not homologous and that any similarity in the structures is, at best, tenuous |
| doi_str_mv | 10.1128/jb.173.12.3855-3863.1991 |
| format | Article |
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(Indiana University, Bloomington, IN) ; Haas, E.S ; James, B.D ; Hunt, D.A ; Pace, N.R</creator><creatorcontrib>Brown, J.W. (Indiana University, Bloomington, IN) ; Haas, E.S ; James, B.D ; Hunt, D.A ; Pace, N.R</creatorcontrib><description>The secondary structures of the eubacterial RNase P RNAs are being elucidated by a phylogenetic comparative approach. Sequences of genes encoding RNase P RNA from each of the recognized subgroups (alpha, beta, gamma, and delta) of the proteobacteria have now been determined. These sequences allow the refinement, to nearly the base pair level, of the phylogenetic model for RNase P RNA secondary structure. Evolutionary change among the RNase P RNAs was found to occur primarily in four discrete structural domains that are peripheral to a highly conserved core structure. The new sequences were used to examine critically the proposed similarity (C. Guerrier-Takada, N. Lumelsky, and S. Altman, Science 246:1578-1584, 1989) between a portion of RNase P RNA and the "exit site" of the 23S rRNA of Escherichia coli. Phylogenetic comparisons indicate that these sequences are not homologous and that any similarity in the structures is, at best, tenuous</description><identifier>ISSN: 0021-9193</identifier><identifier>EISSN: 1098-5530</identifier><identifier>EISSN: 1067-8832</identifier><identifier>DOI: 10.1128/jb.173.12.3855-3863.1991</identifier><identifier>PMID: 1711030</identifier><identifier>CODEN: JOBAAY</identifier><language>eng</language><publisher>Washington, DC: American Society for Microbiology</publisher><subject>AGROBACTERIUM TUMEFACIENS ; ALCALIGENES ; Alcaligenes - enzymology ; Alcaligenes eutrophus ; ARN ; BACTERIA ; Bacteria - enzymology ; Bacteria - genetics ; BACTERIA GRAM NEGATIVA ; BACTERIE GRAM NEGATIF ; Bacteriology ; Base Sequence ; Biological and medical sciences ; Blotting, Northern ; Blotting, Southern ; Chromatium - enzymology ; Chromatium vinosum ; CLONACION ; CLONAGE ; Desulfovibrio - enzymology ; Desulfovibrio desulfuricans ; Endoribonucleases - genetics ; Endoribonucleases - isolation & purification ; Escherichia coli Proteins ; FILOGENIA ; Fundamental and applied biological sciences. Psychology ; GENE ; GENES ; Genetics ; Microbiology ; Molecular Sequence Data ; Nucleic Acid Conformation ; NUCLEOTIDE ; NUCLEOTIDOS ; PHYLOGENIE ; Phylogeny ; Rhizobium - enzymology ; Rhodospirillum rubrum ; Rhodospirillum rubrum - enzymology ; RIBONUCLEASAS ; RIBONUCLEASE ; Ribonuclease P ; RNA, Bacterial - analysis ; RNA, Catalytic - genetics ; RNA, Catalytic - isolation & purification ; Sequence Homology, Nucleic Acid ; Transcription, Genetic</subject><ispartof>Journal of Bacteriology, 1991-06, Vol.173 (12), p.3855-3863</ispartof><rights>1992 INIST-CNRS</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c575t-eef6d53049fd410a5b7559a9b55fbab791ee22814c4bfe388d4f4705997514773</citedby><cites>FETCH-LOGICAL-c575t-eef6d53049fd410a5b7559a9b55fbab791ee22814c4bfe388d4f4705997514773</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC208017/pdf/$$EPDF$$P50$$Gpubmedcentral$$H</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC208017/$$EHTML$$P50$$Gpubmedcentral$$H</linktohtml><link.rule.ids>230,315,729,782,786,887,27933,27934,53800,53802</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=4940110$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/1711030$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Brown, J.W. (Indiana University, Bloomington, IN)</creatorcontrib><creatorcontrib>Haas, E.S</creatorcontrib><creatorcontrib>James, B.D</creatorcontrib><creatorcontrib>Hunt, D.A</creatorcontrib><creatorcontrib>Pace, N.R</creatorcontrib><title>Phylogenetic analysis and evolution of RNase P RNA in proteobacteria</title><title>Journal of Bacteriology</title><addtitle>J Bacteriol</addtitle><description>The secondary structures of the eubacterial RNase P RNAs are being elucidated by a phylogenetic comparative approach. Sequences of genes encoding RNase P RNA from each of the recognized subgroups (alpha, beta, gamma, and delta) of the proteobacteria have now been determined. These sequences allow the refinement, to nearly the base pair level, of the phylogenetic model for RNase P RNA secondary structure. Evolutionary change among the RNase P RNAs was found to occur primarily in four discrete structural domains that are peripheral to a highly conserved core structure. The new sequences were used to examine critically the proposed similarity (C. Guerrier-Takada, N. Lumelsky, and S. Altman, Science 246:1578-1584, 1989) between a portion of RNase P RNA and the "exit site" of the 23S rRNA of Escherichia coli. Phylogenetic comparisons indicate that these sequences are not homologous and that any similarity in the structures is, at best, tenuous</description><subject>AGROBACTERIUM TUMEFACIENS</subject><subject>ALCALIGENES</subject><subject>Alcaligenes - enzymology</subject><subject>Alcaligenes eutrophus</subject><subject>ARN</subject><subject>BACTERIA</subject><subject>Bacteria - enzymology</subject><subject>Bacteria - genetics</subject><subject>BACTERIA GRAM NEGATIVA</subject><subject>BACTERIE GRAM NEGATIF</subject><subject>Bacteriology</subject><subject>Base Sequence</subject><subject>Biological and medical sciences</subject><subject>Blotting, Northern</subject><subject>Blotting, Southern</subject><subject>Chromatium - enzymology</subject><subject>Chromatium vinosum</subject><subject>CLONACION</subject><subject>CLONAGE</subject><subject>Desulfovibrio - enzymology</subject><subject>Desulfovibrio desulfuricans</subject><subject>Endoribonucleases - genetics</subject><subject>Endoribonucleases - isolation & purification</subject><subject>Escherichia coli Proteins</subject><subject>FILOGENIA</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>GENE</subject><subject>GENES</subject><subject>Genetics</subject><subject>Microbiology</subject><subject>Molecular Sequence Data</subject><subject>Nucleic Acid Conformation</subject><subject>NUCLEOTIDE</subject><subject>NUCLEOTIDOS</subject><subject>PHYLOGENIE</subject><subject>Phylogeny</subject><subject>Rhizobium - enzymology</subject><subject>Rhodospirillum rubrum</subject><subject>Rhodospirillum rubrum - enzymology</subject><subject>RIBONUCLEASAS</subject><subject>RIBONUCLEASE</subject><subject>Ribonuclease P</subject><subject>RNA, Bacterial - analysis</subject><subject>RNA, Catalytic - genetics</subject><subject>RNA, Catalytic - isolation & purification</subject><subject>Sequence Homology, Nucleic Acid</subject><subject>Transcription, Genetic</subject><issn>0021-9193</issn><issn>1098-5530</issn><issn>1067-8832</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1991</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkUtv1DAUhS0EKtOBP4CEFCHUXQZfPxJ7waIqT6mCCujacpLrGY8y8dTOFM2_x1FG5bFhdW2d79yHDiEF0BUAU2-2zQpqvgK24krKkqsqf7SGR2QBVKtSSk4fkwWlDEoNmj8l5yltKQUhJDsjZ1ADUE4X5N3N5tiHNQ44-rawg-2Pyaf86Aq8D_1h9GEogiu-fbEJi5tcLws_FPsYRgyNbUeM3j4jT5ztEz4_1SW5_fD-x9Wn8vrrx89Xl9dlK2s5loiu6vJiQrtOALWyqaXUVjdSusY2tQZExhSIVjQOuVKdcKKmUutagqhrviRv5777Q7PDrsVhjLY3--h3Nh5NsN78rQx-Y9bh3jCqKEz-i5M_hrsDptHsfGqx7-2A4ZCMohUDVsn_giA1F4rxDKoZbGNIKaJ7WAaomZIy28bkyQaYmZIyU1JmSipbX_55zG_jHE3WX590m1rbu2iH1qcHTGhBJ3BJXs3Yxq83P31EY9Pun6kZejFDzgZj1zH3uf2ed9CSVfwXVhyvmA</recordid><startdate>19910601</startdate><enddate>19910601</enddate><creator>Brown, J.W. 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(Indiana University, Bloomington, IN) ; Haas, E.S ; James, B.D ; Hunt, D.A ; Pace, N.R</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c575t-eef6d53049fd410a5b7559a9b55fbab791ee22814c4bfe388d4f4705997514773</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1991</creationdate><topic>AGROBACTERIUM TUMEFACIENS</topic><topic>ALCALIGENES</topic><topic>Alcaligenes - enzymology</topic><topic>Alcaligenes eutrophus</topic><topic>ARN</topic><topic>BACTERIA</topic><topic>Bacteria - enzymology</topic><topic>Bacteria - genetics</topic><topic>BACTERIA GRAM NEGATIVA</topic><topic>BACTERIE GRAM NEGATIF</topic><topic>Bacteriology</topic><topic>Base Sequence</topic><topic>Biological and medical sciences</topic><topic>Blotting, Northern</topic><topic>Blotting, Southern</topic><topic>Chromatium - enzymology</topic><topic>Chromatium vinosum</topic><topic>CLONACION</topic><topic>CLONAGE</topic><topic>Desulfovibrio - enzymology</topic><topic>Desulfovibrio desulfuricans</topic><topic>Endoribonucleases - genetics</topic><topic>Endoribonucleases - isolation & purification</topic><topic>Escherichia coli Proteins</topic><topic>FILOGENIA</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>GENE</topic><topic>GENES</topic><topic>Genetics</topic><topic>Microbiology</topic><topic>Molecular Sequence Data</topic><topic>Nucleic Acid Conformation</topic><topic>NUCLEOTIDE</topic><topic>NUCLEOTIDOS</topic><topic>PHYLOGENIE</topic><topic>Phylogeny</topic><topic>Rhizobium - enzymology</topic><topic>Rhodospirillum rubrum</topic><topic>Rhodospirillum rubrum - enzymology</topic><topic>RIBONUCLEASAS</topic><topic>RIBONUCLEASE</topic><topic>Ribonuclease P</topic><topic>RNA, Bacterial - analysis</topic><topic>RNA, Catalytic - genetics</topic><topic>RNA, Catalytic - isolation & purification</topic><topic>Sequence Homology, Nucleic Acid</topic><topic>Transcription, Genetic</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Brown, J.W. (Indiana University, Bloomington, IN)</creatorcontrib><creatorcontrib>Haas, E.S</creatorcontrib><creatorcontrib>James, B.D</creatorcontrib><creatorcontrib>Hunt, D.A</creatorcontrib><creatorcontrib>Pace, N.R</creatorcontrib><collection>AGRIS</collection><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Bacteriology Abstracts (Microbiology B)</collection><collection>Nucleic Acids Abstracts</collection><collection>Technology Research Database</collection><collection>Environmental Sciences and Pollution Management</collection><collection>Engineering Research Database</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Journal of Bacteriology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Brown, J.W. (Indiana University, Bloomington, IN)</au><au>Haas, E.S</au><au>James, B.D</au><au>Hunt, D.A</au><au>Pace, N.R</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Phylogenetic analysis and evolution of RNase P RNA in proteobacteria</atitle><jtitle>Journal of Bacteriology</jtitle><addtitle>J Bacteriol</addtitle><date>1991-06-01</date><risdate>1991</risdate><volume>173</volume><issue>12</issue><spage>3855</spage><epage>3863</epage><pages>3855-3863</pages><issn>0021-9193</issn><eissn>1098-5530</eissn><eissn>1067-8832</eissn><coden>JOBAAY</coden><abstract>The secondary structures of the eubacterial RNase P RNAs are being elucidated by a phylogenetic comparative approach. Sequences of genes encoding RNase P RNA from each of the recognized subgroups (alpha, beta, gamma, and delta) of the proteobacteria have now been determined. These sequences allow the refinement, to nearly the base pair level, of the phylogenetic model for RNase P RNA secondary structure. Evolutionary change among the RNase P RNAs was found to occur primarily in four discrete structural domains that are peripheral to a highly conserved core structure. The new sequences were used to examine critically the proposed similarity (C. Guerrier-Takada, N. Lumelsky, and S. Altman, Science 246:1578-1584, 1989) between a portion of RNase P RNA and the "exit site" of the 23S rRNA of Escherichia coli. Phylogenetic comparisons indicate that these sequences are not homologous and that any similarity in the structures is, at best, tenuous</abstract><cop>Washington, DC</cop><pub>American Society for Microbiology</pub><pmid>1711030</pmid><doi>10.1128/jb.173.12.3855-3863.1991</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record> |
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| recordid | cdi_fao_agris_US9139526 |
| source | MEDLINE; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
| subjects | AGROBACTERIUM TUMEFACIENS ALCALIGENES Alcaligenes - enzymology Alcaligenes eutrophus ARN BACTERIA Bacteria - enzymology Bacteria - genetics BACTERIA GRAM NEGATIVA BACTERIE GRAM NEGATIF Bacteriology Base Sequence Biological and medical sciences Blotting, Northern Blotting, Southern Chromatium - enzymology Chromatium vinosum CLONACION CLONAGE Desulfovibrio - enzymology Desulfovibrio desulfuricans Endoribonucleases - genetics Endoribonucleases - isolation & purification Escherichia coli Proteins FILOGENIA Fundamental and applied biological sciences. Psychology GENE GENES Genetics Microbiology Molecular Sequence Data Nucleic Acid Conformation NUCLEOTIDE NUCLEOTIDOS PHYLOGENIE Phylogeny Rhizobium - enzymology Rhodospirillum rubrum Rhodospirillum rubrum - enzymology RIBONUCLEASAS RIBONUCLEASE Ribonuclease P RNA, Bacterial - analysis RNA, Catalytic - genetics RNA, Catalytic - isolation & purification Sequence Homology, Nucleic Acid Transcription, Genetic |
| title | Phylogenetic analysis and evolution of RNase P RNA in proteobacteria |
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