Genomic regions determining resistance to leaf stripe (Pyrenophora graminea) in barley
Leaf stripe is a seed-borne disease of barley (Hordeum vulgare) caused by Pyrenophora graminea. Little is known about the genetics of resistance to this pathogen. In the present work, QTL analysis was applied on two recombinant inbred line (RIL) populations derived from two- and six-rowed barley gen...
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| Veröffentlicht in: | Genome 2002-06, Vol.45 (3), p.460-466 |
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| creator | Arru, L Niks, R.E Lindhout, P Vale, G Francia, E Pecchioni, N |
| description | Leaf stripe is a seed-borne disease of barley (Hordeum vulgare) caused by Pyrenophora graminea. Little is known about the genetics of resistance to this pathogen. In the present work, QTL analysis was applied on two recombinant inbred line (RIL) populations derived from two- and six-rowed barley genotypes with different levels of partial resistance to barley leaf stripe. Quantitative trait loci for partial resistance were identified using the composite interval mapping (CIM) method of PLABQTL software, using the putative QTL markers as cofactors. In the L94 x 'Vada' mapping population, one QTL for resistance was detected on chromosome 2H; the same location as the leaf-stripe resistance gene Rdg1 mapped earlier in 'Alf', where it confers complete resistance to the pathogen. An additional minor-effect QTL was identified by further analyses in this segregating population on chromosome 7H. In L94 x C123, two QTLs for resistance were mapped, one each on chromosomes 7H and 2H. |
| doi_str_mv | 10.1139/g02-004 |
| format | Article |
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Little is known about the genetics of resistance to this pathogen. In the present work, QTL analysis was applied on two recombinant inbred line (RIL) populations derived from two- and six-rowed barley genotypes with different levels of partial resistance to barley leaf stripe. Quantitative trait loci for partial resistance were identified using the composite interval mapping (CIM) method of PLABQTL software, using the putative QTL markers as cofactors. In the L94 x 'Vada' mapping population, one QTL for resistance was detected on chromosome 2H; the same location as the leaf-stripe resistance gene Rdg1 mapped earlier in 'Alf', where it confers complete resistance to the pathogen. An additional minor-effect QTL was identified by further analyses in this segregating population on chromosome 7H. In L94 x C123, two QTLs for resistance were mapped, one each on chromosomes 7H and 2H.</description><identifier>ISSN: 0831-2796</identifier><identifier>EISSN: 1480-3321</identifier><identifier>DOI: 10.1139/g02-004</identifier><identifier>PMID: 12033613</identifier><identifier>CODEN: GENOE3</identifier><language>eng</language><publisher>Ottawa, Canada: NRC Research Press</publisher><subject>Analysis of Variance ; Ascomycota - physiology ; Barley ; Chromosome Mapping ; Chromosomes ; Crosses, Genetic ; disease resistance ; EPS ; fungal diseases of plants ; Gene mapping ; genetic resistance ; Genetics ; genomics ; Genotypes ; Hordeum - genetics ; Hordeum - microbiology ; Hordeum vulgare ; inbred lines ; Laboratorium voor Plantenveredeling ; Laboratory of Plant Breeding ; loci ; Models, Genetic ; Pathogens ; Plant Breeding ; Plant Diseases - genetics ; Plant Diseases - microbiology ; Pyrenophora graminea ; Quantitative Trait Loci ; quantitative traits ; Rdg1 gene</subject><ispartof>Genome, 2002-06, Vol.45 (3), p.460-466</ispartof><rights>Copyright National Research Council of Canada Jun 2002</rights><rights>Wageningen University & Research</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c476t-e32a8a8c648f7cfab728fbc56df1b95ed9e8d49d072ac1677c37db5cc78ec2c03</citedby><cites>FETCH-LOGICAL-c476t-e32a8a8c648f7cfab728fbc56df1b95ed9e8d49d072ac1677c37db5cc78ec2c03</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://cdnsciencepub.com/doi/pdf/10.1139/g02-004$$EPDF$$P50$$Gnrcresearch$$H</linktopdf><linktohtml>$$Uhttps://cdnsciencepub.com/doi/full/10.1139/g02-004$$EHTML$$P50$$Gnrcresearch$$H</linktohtml><link.rule.ids>230,315,781,785,886,2933,27928,27929,64432,65238</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/12033613$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Arru, L</creatorcontrib><creatorcontrib>Niks, R.E</creatorcontrib><creatorcontrib>Lindhout, P</creatorcontrib><creatorcontrib>Vale, G</creatorcontrib><creatorcontrib>Francia, E</creatorcontrib><creatorcontrib>Pecchioni, N</creatorcontrib><title>Genomic regions determining resistance to leaf stripe (Pyrenophora graminea) in barley</title><title>Genome</title><addtitle>Génome</addtitle><description>Leaf stripe is a seed-borne disease of barley (Hordeum vulgare) caused by Pyrenophora graminea. Little is known about the genetics of resistance to this pathogen. In the present work, QTL analysis was applied on two recombinant inbred line (RIL) populations derived from two- and six-rowed barley genotypes with different levels of partial resistance to barley leaf stripe. Quantitative trait loci for partial resistance were identified using the composite interval mapping (CIM) method of PLABQTL software, using the putative QTL markers as cofactors. In the L94 x 'Vada' mapping population, one QTL for resistance was detected on chromosome 2H; the same location as the leaf-stripe resistance gene Rdg1 mapped earlier in 'Alf', where it confers complete resistance to the pathogen. An additional minor-effect QTL was identified by further analyses in this segregating population on chromosome 7H. In L94 x C123, two QTLs for resistance were mapped, one each on chromosomes 7H and 2H.</description><subject>Analysis of Variance</subject><subject>Ascomycota - physiology</subject><subject>Barley</subject><subject>Chromosome Mapping</subject><subject>Chromosomes</subject><subject>Crosses, Genetic</subject><subject>disease resistance</subject><subject>EPS</subject><subject>fungal diseases of plants</subject><subject>Gene mapping</subject><subject>genetic resistance</subject><subject>Genetics</subject><subject>genomics</subject><subject>Genotypes</subject><subject>Hordeum - genetics</subject><subject>Hordeum - microbiology</subject><subject>Hordeum vulgare</subject><subject>inbred lines</subject><subject>Laboratorium voor Plantenveredeling</subject><subject>Laboratory of Plant Breeding</subject><subject>loci</subject><subject>Models, Genetic</subject><subject>Pathogens</subject><subject>Plant Breeding</subject><subject>Plant Diseases - genetics</subject><subject>Plant Diseases - microbiology</subject><subject>Pyrenophora graminea</subject><subject>Quantitative Trait Loci</subject><subject>quantitative traits</subject><subject>Rdg1 gene</subject><issn>0831-2796</issn><issn>1480-3321</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2002</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><recordid>eNqF0V1r1jAUB_AginvcxG-gxYv5AtWTpG1S72S4KQwm6LwNaXraZbRJl7SM59ub0geEgXp1IPzO4eT8CXlB4QOlvP7YA8sBikdkRwsJOeeMPiY7kJzmTNTVEXkW4y0ABV7Tp-SIMuC8onxHfl2g86M1WcDeehezFmcMo3XW9ekt2jhrZzCbfTag7rI4Bzth9vb7PqTG6cYHnfVBpwbU7zLrskaHAfcn5Emnh4jPD_WYXJ9_-Xn2Nb-8uvh29vkyN4Wo5hw501JLUxWyE6bTjWCya0xZtR1t6hLbGmVb1C0Ipg2thDBctE1pjJBomAF-TD5tc-91j-vO6JTTwdiovLZqsE3QYa_ul6DcsJZpaaKijJUlS82nW_MU_N2CcVajjQaHQTv0S1SCCsZrqP4LqeRMCigTfP0A3voluHQBxRiUFIRY0ZsNmeBjDNipKdhxXZOCWtNUKU2V0kzy5WHc0ozY_nGH-BJ4vwEXTAoL089v_jHt9O_4gNTUdgm-2mCnvdJ9SMe8_sGAcmA1q8v029-7OMAk</recordid><startdate>20020601</startdate><enddate>20020601</enddate><creator>Arru, L</creator><creator>Niks, R.E</creator><creator>Lindhout, P</creator><creator>Vale, G</creator><creator>Francia, E</creator><creator>Pecchioni, N</creator><general>NRC Research Press</general><general>Canadian Science Publishing NRC Research Press</general><scope>FBQ</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7SS</scope><scope>7TK</scope><scope>7TM</scope><scope>7U9</scope><scope>7X2</scope><scope>7X7</scope><scope>7XB</scope><scope>88A</scope><scope>88E</scope><scope>88I</scope><scope>8AF</scope><scope>8AO</scope><scope>8FD</scope><scope>8FE</scope><scope>8FH</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8FQ</scope><scope>8FV</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>ATCPS</scope><scope>AZQEC</scope><scope>BBNVY</scope><scope>BENPR</scope><scope>BHPHI</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>H94</scope><scope>HCIFZ</scope><scope>K9.</scope><scope>LK8</scope><scope>M0K</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>M2P</scope><scope>M3G</scope><scope>M7P</scope><scope>MBDVC</scope><scope>P64</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>Q9U</scope><scope>RC3</scope><scope>M7N</scope><scope>7X8</scope><scope>QVL</scope></search><sort><creationdate>20020601</creationdate><title>Genomic regions determining resistance to leaf stripe (Pyrenophora graminea) in barley</title><author>Arru, L ; Niks, R.E ; Lindhout, P ; Vale, G ; Francia, E ; Pecchioni, N</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c476t-e32a8a8c648f7cfab728fbc56df1b95ed9e8d49d072ac1677c37db5cc78ec2c03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2002</creationdate><topic>Analysis of Variance</topic><topic>Ascomycota - physiology</topic><topic>Barley</topic><topic>Chromosome Mapping</topic><topic>Chromosomes</topic><topic>Crosses, Genetic</topic><topic>disease resistance</topic><topic>EPS</topic><topic>fungal diseases of plants</topic><topic>Gene mapping</topic><topic>genetic resistance</topic><topic>Genetics</topic><topic>genomics</topic><topic>Genotypes</topic><topic>Hordeum - genetics</topic><topic>Hordeum - microbiology</topic><topic>Hordeum vulgare</topic><topic>inbred lines</topic><topic>Laboratorium voor Plantenveredeling</topic><topic>Laboratory of Plant Breeding</topic><topic>loci</topic><topic>Models, Genetic</topic><topic>Pathogens</topic><topic>Plant Breeding</topic><topic>Plant Diseases - genetics</topic><topic>Plant Diseases - microbiology</topic><topic>Pyrenophora graminea</topic><topic>Quantitative Trait Loci</topic><topic>quantitative traits</topic><topic>Rdg1 gene</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Arru, L</creatorcontrib><creatorcontrib>Niks, R.E</creatorcontrib><creatorcontrib>Lindhout, P</creatorcontrib><creatorcontrib>Vale, G</creatorcontrib><creatorcontrib>Francia, E</creatorcontrib><creatorcontrib>Pecchioni, N</creatorcontrib><collection>AGRIS</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Entomology Abstracts (Full archive)</collection><collection>Neurosciences Abstracts</collection><collection>Nucleic Acids Abstracts</collection><collection>Virology and AIDS Abstracts</collection><collection>Agricultural Science Collection</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Biology Database (Alumni Edition)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Science Database (Alumni Edition)</collection><collection>STEM Database</collection><collection>ProQuest Pharma Collection</collection><collection>Technology Research Database</collection><collection>ProQuest SciTech Collection</collection><collection>ProQuest Natural Science Collection</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Canadian Business & Current Affairs Database</collection><collection>Canadian Business & Current Affairs Database (Alumni Edition)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>Agricultural & Environmental Science Collection</collection><collection>ProQuest Central Essentials</collection><collection>Biological Science Collection</collection><collection>ProQuest Central</collection><collection>Natural Science Collection</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>AIDS and Cancer Research Abstracts</collection><collection>SciTech Premium Collection</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>ProQuest Biological Science Collection</collection><collection>Agricultural Science Database</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Science Database</collection><collection>CBCA Reference & Current Events</collection><collection>Biological Science Database</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>Algology Mycology and Protozoology Abstracts (Microbiology C)</collection><collection>MEDLINE - Academic</collection><collection>NARCIS:Publications</collection><jtitle>Genome</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Arru, L</au><au>Niks, R.E</au><au>Lindhout, P</au><au>Vale, G</au><au>Francia, E</au><au>Pecchioni, N</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genomic regions determining resistance to leaf stripe (Pyrenophora graminea) in barley</atitle><jtitle>Genome</jtitle><addtitle>Génome</addtitle><date>2002-06-01</date><risdate>2002</risdate><volume>45</volume><issue>3</issue><spage>460</spage><epage>466</epage><pages>460-466</pages><issn>0831-2796</issn><eissn>1480-3321</eissn><coden>GENOE3</coden><abstract>Leaf stripe is a seed-borne disease of barley (Hordeum vulgare) caused by Pyrenophora graminea. Little is known about the genetics of resistance to this pathogen. In the present work, QTL analysis was applied on two recombinant inbred line (RIL) populations derived from two- and six-rowed barley genotypes with different levels of partial resistance to barley leaf stripe. Quantitative trait loci for partial resistance were identified using the composite interval mapping (CIM) method of PLABQTL software, using the putative QTL markers as cofactors. In the L94 x 'Vada' mapping population, one QTL for resistance was detected on chromosome 2H; the same location as the leaf-stripe resistance gene Rdg1 mapped earlier in 'Alf', where it confers complete resistance to the pathogen. An additional minor-effect QTL was identified by further analyses in this segregating population on chromosome 7H. In L94 x C123, two QTLs for resistance were mapped, one each on chromosomes 7H and 2H.</abstract><cop>Ottawa, Canada</cop><pub>NRC Research Press</pub><pmid>12033613</pmid><doi>10.1139/g02-004</doi><tpages>7</tpages></addata></record> |
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| subjects | Analysis of Variance Ascomycota - physiology Barley Chromosome Mapping Chromosomes Crosses, Genetic disease resistance EPS fungal diseases of plants Gene mapping genetic resistance Genetics genomics Genotypes Hordeum - genetics Hordeum - microbiology Hordeum vulgare inbred lines Laboratorium voor Plantenveredeling Laboratory of Plant Breeding loci Models, Genetic Pathogens Plant Breeding Plant Diseases - genetics Plant Diseases - microbiology Pyrenophora graminea Quantitative Trait Loci quantitative traits Rdg1 gene |
| title | Genomic regions determining resistance to leaf stripe (Pyrenophora graminea) in barley |
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