Simple Sequence Repeat (SSR) and GC Distribution in the Arabidopsis thaliana Genome
We have mined each of the five A. thaliana chromosomes for the presence of simple sequence repeats (SSRs) and developed custom perl scripts to examine their distribution and abundance in relation to genomic position, local G/C content and location within and around transcribed sequences. The distrib...
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| Veröffentlicht in: | Journal of plant biotechnology 2005-03, Vol.7 (1) |
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| creator | Mortimer, Jennifer C (La Trobe University, Victoria, Australia) Batley, Jacqueline (La Trobe University, Victoria, Australia) Love, Christopher G (La Trobe University, Victoria, Australia) Logan, Erica (La Trobe University, Victoria, Australia) Edwards, David (La Trobe University, Victoria, Australia), E-mail: Dave.Edwards@dpi.vic.gov.au |
| description | We have mined each of the five A. thaliana chromosomes for the presence of simple sequence repeats (SSRs) and developed custom perl scripts to examine their distribution and abundance in relation to genomic position, local G/C content and location within and around transcribed sequences. The distribution of repeats and G/C content with respect to genomic regions (exons, UTRs, introns, intergenic regions and proximity to expressed genes) are shown. SSRs show a non-random distribution across the genome and a strong association within and around transcribed sequences, while G/C density is associated specifically with the coding portions of transcribed sequences. |
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The distribution of repeats and G/C content with respect to genomic regions (exons, UTRs, introns, intergenic regions and proximity to expressed genes) are shown. 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The distribution of repeats and G/C content with respect to genomic regions (exons, UTRs, introns, intergenic regions and proximity to expressed genes) are shown. SSRs show a non-random distribution across the genome and a strong association within and around transcribed sequences, while G/C density is associated specifically with the coding portions of transcribed sequences.</abstract></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1229-2818 |
| ispartof | Journal of plant biotechnology, 2005-03, Vol.7 (1) |
| issn | 1229-2818 2384-1397 |
| language | eng |
| recordid | cdi_fao_agris_KR2006015380 |
| source | Alma/SFX Local Collection |
| subjects | ARABIDOPSIS GC distribution Genome Structure Genome topology Simple Sequence Repeat (SSR) |
| title | Simple Sequence Repeat (SSR) and GC Distribution in the Arabidopsis thaliana Genome |
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