Objective comparison of particle tracking methods

Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tas...

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Hauptverfasser: Chenouard, Nicolas, Smal, Ihor, De Chaumont, Fabrice, Maska, Martin, Sbalzarini, Ivo F, Gong, Yuanhao, Cardinale, Janick, Carthel, Craig, Coraluppi, Stefano, Winter, Mark, Cohen, Andrew R, Godinez, William J, Rohr, Karl, Kalaidzidis, Yannis, Liang, Liang, Duncan, James, Shen, Hongying, Xu, Yingke, Magnusson, Klas E. G, Jalden, Joakim, Blau, Helen M, Paul-Gilloteaux, Perrine, Roudot, Philippe, Kervrann, Charles, Waharte, Francois, Tinevez, Jean-Yves, Shorte, Spencer L, Willemse, Joost, Celler, Katherine, Van Wezel, Gilles P, Dan, Han-Wei, Tsai, Yuh-Show, Ortiz De Solorzano, Carlos, Olivo-Marin, Jean-Christophe, Meijering, Erik
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creator Chenouard, Nicolas
Smal, Ihor
De Chaumont, Fabrice
Maska, Martin
Sbalzarini, Ivo F
Gong, Yuanhao
Cardinale, Janick
Carthel, Craig
Coraluppi, Stefano
Winter, Mark
Cohen, Andrew R
Godinez, William J
Rohr, Karl
Kalaidzidis, Yannis
Liang, Liang
Duncan, James
Shen, Hongying
Xu, Yingke
Magnusson, Klas E. G
Jalden, Joakim
Blau, Helen M
Paul-Gilloteaux, Perrine
Roudot, Philippe
Kervrann, Charles
Waharte, Francois
Tinevez, Jean-Yves
Shorte, Spencer L
Willemse, Joost
Celler, Katherine
Van Wezel, Gilles P
Dan, Han-Wei
Tsai, Yuh-Show
Ortiz De Solorzano, Carlos
Olivo-Marin, Jean-Christophe
Meijering, Erik
description Particle tracking is of key importance for quantitative analysis of intracellular dynamic processes from time-lapse microscopy image data. Because manually detecting and following large numbers of individual particles is not feasible, automated computational methods have been developed for these tasks by many groups. Aiming to perform an objective comparison of methods, we gathered the community and organized an open competition in which participating teams applied their own methods independently to a commonly defined data set including diverse scenarios. Performance was assessed using commonly defined measures. Although no single method performed best across all scenarios, the results revealed clear differences between the various approaches, leading to notable practical conclusions for users and developers.
doi_str_mv 10.1038/nmeth.2808
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title Objective comparison of particle tracking methods
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