Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers
In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject...
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| creator | Cohen-Adad, Julien Alonso-Ortiz, Eva Abramovic, Mihael Arneitz, Carina Atcheson, Nicole Barlow, Laura Barry, Robert L Barth, Markus Battiston, Marco Buchel, Christian Budde, Matthew Callot, Virginie Combes, Anna J. E De Leener, Benjamin Descoteaux, Maxime de Sousa, Paulo Loureiro Dostal, Marek Doyon, Julien Dvorak, Adam Eippert, Falk Epperson, Karla R Epperson, Kevin S Freund, Patrick Finsterbusch, Jurgen Foias, Alexandru Fratini, Michela Fukunaga, Issei Gandini Wheeler-Kingshott, Claudia A. M Germani, Giancarlo Gilbert, Guillaume Giove, Federico Gros, Charley Grussu, Francesco Hagiwara, Akifumi Henry, Pierre-Gilles Horak, Tomas Hori, Masaaki Joers, James Kamiya, Kouhei Karbasforoushan, Haleh Kerkovsky, Milos Khatibi, Ali Kim, Joo-Won Kinany, Nawal Kitzler, Hagen H Kolind, Shannon Kong, Yazhuo Kudlicka, Petr Kuntke, Paul Kurniawan, Nyoman D Kusmia, Slawomir Labounek, Rene Lagana, Maria Marcella Laule, Cornelia Law, Christine S Lenglet, Christophe Leutritz, Tobias Liu, Yaou Llufriu, Sara Mackey, Sean Martinez-Heras, Eloy Mattera, Loan Nestrasil, Igor O'Grady, Kristin P Papinutto, Nico Papp, Daniel Pareto, Deborah Parrish, Todd B Pichiecchio, Anna Prados, Ferran Rovira, Alex Ruitenberg, Marc J Samson, Rebecca S Savini, Giovanni Seif, Maryam Seifert, Alan C Smith, Alex K Smith, Seth A Smith, Zachary A Solana, Elisabeth Suzuki, Y Tackley, George Tinnermann, Alexandra Valosek, Jan van de Ville, Dimitri Yiannakas, Marios C Weber, Kenneth A. ., II Weiskopf, Nikolaus Wise, Richard G Wyss, Patrik O Xu, Junqian |
| description | In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject dataset across 42 centers (for a total of 260 participants), spanning the three main MRI manufacturers: GE, Philips and Siemens. Both datasets are publicly available via git-annex. Data were analysed using the Spinal Cord Toolbox to produce normative values as well as inter/intra-site and inter/intra-manufacturer statistics. Reproducibility for the spine generic protocol was high across sites and manufacturers, with an average inter-site coefficient of variation of less than 5% for all the metrics. Full documentation and results can be found at https://spine-generic.rtfd.io/. The datasets and analysis pipeline will help pave the way towards accessible and reproducible quantitative MRI in the spinal cord. |
| doi_str_mv | 10.1038/s41597-021-00941-8 |
| format | Web Resource |
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M</creatorcontrib><creatorcontrib>Germani, Giancarlo</creatorcontrib><creatorcontrib>Gilbert, Guillaume</creatorcontrib><creatorcontrib>Giove, Federico</creatorcontrib><creatorcontrib>Gros, Charley</creatorcontrib><creatorcontrib>Grussu, Francesco</creatorcontrib><creatorcontrib>Hagiwara, Akifumi</creatorcontrib><creatorcontrib>Henry, Pierre-Gilles</creatorcontrib><creatorcontrib>Horak, Tomas</creatorcontrib><creatorcontrib>Hori, Masaaki</creatorcontrib><creatorcontrib>Joers, James</creatorcontrib><creatorcontrib>Kamiya, Kouhei</creatorcontrib><creatorcontrib>Karbasforoushan, Haleh</creatorcontrib><creatorcontrib>Kerkovsky, Milos</creatorcontrib><creatorcontrib>Khatibi, Ali</creatorcontrib><creatorcontrib>Kim, Joo-Won</creatorcontrib><creatorcontrib>Kinany, Nawal</creatorcontrib><creatorcontrib>Kitzler, Hagen H</creatorcontrib><creatorcontrib>Kolind, Shannon</creatorcontrib><creatorcontrib>Kong, Yazhuo</creatorcontrib><creatorcontrib>Kudlicka, Petr</creatorcontrib><creatorcontrib>Kuntke, Paul</creatorcontrib><creatorcontrib>Kurniawan, Nyoman D</creatorcontrib><creatorcontrib>Kusmia, Slawomir</creatorcontrib><creatorcontrib>Labounek, Rene</creatorcontrib><creatorcontrib>Lagana, Maria Marcella</creatorcontrib><creatorcontrib>Laule, Cornelia</creatorcontrib><creatorcontrib>Law, Christine S</creatorcontrib><creatorcontrib>Lenglet, Christophe</creatorcontrib><creatorcontrib>Leutritz, Tobias</creatorcontrib><creatorcontrib>Liu, Yaou</creatorcontrib><creatorcontrib>Llufriu, Sara</creatorcontrib><creatorcontrib>Mackey, Sean</creatorcontrib><creatorcontrib>Martinez-Heras, Eloy</creatorcontrib><creatorcontrib>Mattera, Loan</creatorcontrib><creatorcontrib>Nestrasil, Igor</creatorcontrib><creatorcontrib>O'Grady, Kristin P</creatorcontrib><creatorcontrib>Papinutto, Nico</creatorcontrib><creatorcontrib>Papp, Daniel</creatorcontrib><creatorcontrib>Pareto, Deborah</creatorcontrib><creatorcontrib>Parrish, Todd B</creatorcontrib><creatorcontrib>Pichiecchio, Anna</creatorcontrib><creatorcontrib>Prados, Ferran</creatorcontrib><creatorcontrib>Rovira, Alex</creatorcontrib><creatorcontrib>Ruitenberg, Marc J</creatorcontrib><creatorcontrib>Samson, Rebecca S</creatorcontrib><creatorcontrib>Savini, Giovanni</creatorcontrib><creatorcontrib>Seif, Maryam</creatorcontrib><creatorcontrib>Seifert, Alan C</creatorcontrib><creatorcontrib>Smith, Alex K</creatorcontrib><creatorcontrib>Smith, Seth A</creatorcontrib><creatorcontrib>Smith, Zachary A</creatorcontrib><creatorcontrib>Solana, Elisabeth</creatorcontrib><creatorcontrib>Suzuki, Y</creatorcontrib><creatorcontrib>Tackley, George</creatorcontrib><creatorcontrib>Tinnermann, Alexandra</creatorcontrib><creatorcontrib>Valosek, Jan</creatorcontrib><creatorcontrib>van de Ville, Dimitri</creatorcontrib><creatorcontrib>Yiannakas, Marios C</creatorcontrib><creatorcontrib>Weber, Kenneth A. ., II</creatorcontrib><creatorcontrib>Weiskopf, Nikolaus</creatorcontrib><creatorcontrib>Wise, Richard G</creatorcontrib><creatorcontrib>Wyss, Patrik O</creatorcontrib><creatorcontrib>Xu, Junqian</creatorcontrib><collection>Infoscience: EPF Lausanne</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Cohen-Adad, Julien</au><au>Alonso-Ortiz, Eva</au><au>Abramovic, Mihael</au><au>Arneitz, Carina</au><au>Atcheson, Nicole</au><au>Barlow, Laura</au><au>Barry, Robert L</au><au>Barth, Markus</au><au>Battiston, Marco</au><au>Buchel, Christian</au><au>Budde, Matthew</au><au>Callot, Virginie</au><au>Combes, Anna J. E</au><au>De Leener, Benjamin</au><au>Descoteaux, Maxime</au><au>de Sousa, Paulo Loureiro</au><au>Dostal, Marek</au><au>Doyon, Julien</au><au>Dvorak, Adam</au><au>Eippert, Falk</au><au>Epperson, Karla R</au><au>Epperson, Kevin S</au><au>Freund, Patrick</au><au>Finsterbusch, Jurgen</au><au>Foias, Alexandru</au><au>Fratini, Michela</au><au>Fukunaga, Issei</au><au>Gandini Wheeler-Kingshott, Claudia A. M</au><au>Germani, Giancarlo</au><au>Gilbert, Guillaume</au><au>Giove, Federico</au><au>Gros, Charley</au><au>Grussu, Francesco</au><au>Hagiwara, Akifumi</au><au>Henry, Pierre-Gilles</au><au>Horak, Tomas</au><au>Hori, Masaaki</au><au>Joers, James</au><au>Kamiya, Kouhei</au><au>Karbasforoushan, Haleh</au><au>Kerkovsky, Milos</au><au>Khatibi, Ali</au><au>Kim, Joo-Won</au><au>Kinany, Nawal</au><au>Kitzler, Hagen H</au><au>Kolind, Shannon</au><au>Kong, Yazhuo</au><au>Kudlicka, Petr</au><au>Kuntke, Paul</au><au>Kurniawan, Nyoman D</au><au>Kusmia, Slawomir</au><au>Labounek, Rene</au><au>Lagana, Maria Marcella</au><au>Laule, Cornelia</au><au>Law, Christine S</au><au>Lenglet, Christophe</au><au>Leutritz, Tobias</au><au>Liu, Yaou</au><au>Llufriu, Sara</au><au>Mackey, Sean</au><au>Martinez-Heras, Eloy</au><au>Mattera, Loan</au><au>Nestrasil, Igor</au><au>O'Grady, Kristin P</au><au>Papinutto, Nico</au><au>Papp, Daniel</au><au>Pareto, Deborah</au><au>Parrish, Todd B</au><au>Pichiecchio, Anna</au><au>Prados, Ferran</au><au>Rovira, Alex</au><au>Ruitenberg, Marc J</au><au>Samson, Rebecca S</au><au>Savini, Giovanni</au><au>Seif, Maryam</au><au>Seifert, Alan C</au><au>Smith, Alex K</au><au>Smith, Seth A</au><au>Smith, Zachary A</au><au>Solana, Elisabeth</au><au>Suzuki, Y</au><au>Tackley, George</au><au>Tinnermann, Alexandra</au><au>Valosek, Jan</au><au>van de Ville, Dimitri</au><au>Yiannakas, Marios C</au><au>Weber, Kenneth A. ., II</au><au>Weiskopf, Nikolaus</au><au>Wise, Richard G</au><au>Wyss, Patrik O</au><au>Xu, Junqian</au><format>book</format><genre>unknown</genre><ristype>GEN</ristype><btitle>Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers</btitle><abstract>In a companion paper by Cohen-Adad et al. we introduce the spine generic quantitative MRI protocol that provides valuable metrics for assessing spinal cord macrostructural and microstructural integrity. This protocol was used to acquire a single subject dataset across 19 centers and a multi-subject dataset across 42 centers (for a total of 260 participants), spanning the three main MRI manufacturers: GE, Philips and Siemens. Both datasets are publicly available via git-annex. Data were analysed using the Spinal Cord Toolbox to produce normative values as well as inter/intra-site and inter/intra-manufacturer statistics. Reproducibility for the spine generic protocol was high across sites and manufacturers, with an average inter-site coefficient of variation of less than 5% for all the metrics. Full documentation and results can be found at https://spine-generic.rtfd.io/. The datasets and analysis pipeline will help pave the way towards accessible and reproducible quantitative MRI in the spinal cord.</abstract><pub>Berlin, NATURE PORTFOLIO</pub><doi>10.1038/s41597-021-00941-8</doi><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext_linktorsrc |
| identifier | DOI: 10.1038/s41597-021-00941-8 |
| ispartof | |
| issn | |
| language | eng |
| recordid | cdi_epfl_infoscience_oai_infoscience_epfl_ch_288168 |
| source | Infoscience: EPF Lausanne |
| title | Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-22T11%3A49%3A27IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-epfl_F1K&rft_val_fmt=info:ofi/fmt:kev:mtx:book&rft.genre=unknown&rft.btitle=Open-access%20quantitative%20MRI%20data%20of%20the%20spinal%20cord%20and%20reproducibility%20across%20participants,%20sites%20and%20manufacturers&rft.au=Cohen-Adad,%20Julien&rft_id=info:doi/10.1038/s41597-021-00941-8&rft_dat=%3Cepfl_F1K%3Eoai_infoscience_epfl_ch_288168%3C/epfl_F1K%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true |