A ZmGDB context page focused on a BAC assembly (accession ; GenBank id 48374974)

Copyright information:Taken from "xGDB: open-source computational infrastructure for the integrated evaluation and analysis of genome features"Genome Biology 2006;7(11):R111-R111.Published online 20 Nov 2006PMCID:PMC1794590. A site header contains site navigation and search controls (items 1 and 2). Links to integrated webservices (item 3) and context navigation controls (item 4) are available. The feature control panel (item 5) and context graphic shows yrGATE community annotations (item 7), GenBank gene features (item 8), PlantGDB GSS assemblies (item 9), rice predicted protein alignments (item 10), cDNA alignments (item 11), EST alignments (item 12), PlantGDB Unique Transcript alignments (item 13), and MaizeArray microarray probe alignments (item 14) in the genomic region spanning bases 45,001 to 55,000 (item 6) of the assembled sequence. Exon features are displayed as filled rectangles connected by intronic features represented by similarly colored lines. Predicted start and stop codons of open reading frames are represented by green and red triangles, respectively. Arrowheads represent genomic strand orientation when this can be determined. Noncognate features are represented by alternative feature colors (pink for EST and grey for cDNA features). BAC, bacterial artificial chromosome; EST, expressed sequence tag; GSS, genome survey sequence.