Estimating pair-wise distances

Estimating pair-wise distances

We use a general time reversible nucleotide substitution model (line 1). The pair-wise distances (line 4) are passed to the neighbor joining (nj) function (line 5), which returns a tree that is then written to file (line 6).Copyright information:Taken from "PyCogent: a toolkit for making sense...

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Hauptverfasser: Knight, Rob, Maxwell, Peter, Birmingham, Amanda, Carnes, Jason, J Gregory Caporaso, Easton, Brett C, Eaton, Michael, Hamady, Micah, Lindsay, Helen, Zongzhi Liu, Lozupone, Catherine, McDonald, Daniel, Robeson, Michael, Sammut, Raymond, Smit, Sandra, Wakefield, Matthew J, Widmann, Jeremy, Wikman, Shandy, Wilson, Stephanie, Ying, Hua, Huttley, Gavin A
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Zusammenfassung:We use a general time reversible nucleotide substitution model (line 1). The pair-wise distances (line 4) are passed to the neighbor joining (nj) function (line 5), which returns a tree that is then written to file (line 6).Copyright information:Taken from "PyCogent: a toolkit for making sense from sequence"http://genomebiology.com/2007/8/8/R171Genome Biology 2007;8(8):R171-R171.Published online 21 Aug 2007PMCID:PMC2375001.
DOI:10.6084/m9.figshare.25489