Additional file 2 of Transcriptomic basis of sex loss in the pea aphid
Supplementary Material 2. Figure S2: Distribution of expressed genes and DEGs from each clusters of embryos transcriptomic analysis. Clusters 1, 2, 3, 4 respectively contains 2742, 3698, 1215, 591 DEGs. The aggregate clusters 5 and 6 contains 1651 DEGs. Distribution of expressed genes (gold) and DEG...
Gespeichert in:
| Hauptverfasser: | , , , , , , , , , , , , |
|---|---|
| Format: | Dataset |
| Sprache: | eng |
| Schlagworte: | |
| Online-Zugang: | Volltext bestellen |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| container_end_page | |
|---|---|
| container_issue | |
| container_start_page | |
| container_title | |
| container_volume | |
| creator | Huguet, M. D. Robin, S. Hudaverdian, S. Tanguy, S. Leterme-Prunier, N. Cloteau, R. Baulande, S. Legoix-Né, P. Legeai, F. Simon, J.-C. Jaquiéry, J. Tagu, D. Le Trionnaire, G. |
| description | Supplementary Material 2. Figure S2: Distribution of expressed genes and DEGs from each clusters of embryos transcriptomic analysis. Clusters 1, 2, 3, 4 respectively contains 2742, 3698, 1215, 591 DEGs. The aggregate clusters 5 and 6 contains 1651 DEGs. Distribution of expressed genes (gold) and DEGs from each cluster or aggregate clusters (black) on the three autosomes (A1, A2, A3) and on X chromosome was performed using R project. The y axis represent the number of expressed genes or DEGs by sliding window of 1 Mb (x axis). Two region of aggregate cluster 5 and 6 were significantly DEGs enriched (Student’s T test: t = 9.9344, df = 27.388, p-value = 1.406e-10). These two enriched regions (mean 17.4 DEGs by Mb) represent 50 Mb in end of X and 10 Mb in beginning of A2. Regions not enriched in DEGs contain on average 1.5 DEGs by Mb. |
| doi_str_mv | 10.6084/m9.figshare.25264477 |
| format | Dataset |
| fullrecord | <record><control><sourceid>datacite_PQ8</sourceid><recordid>TN_cdi_datacite_primary_10_6084_m9_figshare_25264477</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_6084_m9_figshare_25264477</sourcerecordid><originalsourceid>FETCH-datacite_primary_10_6084_m9_figshare_252644773</originalsourceid><addsrcrecordid>eNqdzkEKwjAQheFsXIh6AxdzAWtbY2uXIhYP0H0Y28QOJE3IZKG3l4K9gKsHPzz4hNgXeVblF3l0TWboxSNGnZXnspKyrteivQ4DJfITWjBkNZTgDXQRJ-4jheQd9fBEJp476zdYzww0QRo1BI2AYaRhK1YGLevdbzdCtvfu9jgMmLCnpFWI5DB-VJGrmaNcoxaOWjinP29f_QlH_Q</addsrcrecordid><sourcetype>Publisher</sourcetype><iscdi>true</iscdi><recordtype>dataset</recordtype></control><display><type>dataset</type><title>Additional file 2 of Transcriptomic basis of sex loss in the pea aphid</title><source>DataCite</source><creator>Huguet, M. D. ; Robin, S. ; Hudaverdian, S. ; Tanguy, S. ; Leterme-Prunier, N. ; Cloteau, R. ; Baulande, S. ; Legoix-Né, P. ; Legeai, F. ; Simon, J.-C. ; Jaquiéry, J. ; Tagu, D. ; Le Trionnaire, G.</creator><creatorcontrib>Huguet, M. D. ; Robin, S. ; Hudaverdian, S. ; Tanguy, S. ; Leterme-Prunier, N. ; Cloteau, R. ; Baulande, S. ; Legoix-Né, P. ; Legeai, F. ; Simon, J.-C. ; Jaquiéry, J. ; Tagu, D. ; Le Trionnaire, G.</creatorcontrib><description>Supplementary Material 2. Figure S2: Distribution of expressed genes and DEGs from each clusters of embryos transcriptomic analysis. Clusters 1, 2, 3, 4 respectively contains 2742, 3698, 1215, 591 DEGs. The aggregate clusters 5 and 6 contains 1651 DEGs. Distribution of expressed genes (gold) and DEGs from each cluster or aggregate clusters (black) on the three autosomes (A1, A2, A3) and on X chromosome was performed using R project. The y axis represent the number of expressed genes or DEGs by sliding window of 1 Mb (x axis). Two region of aggregate cluster 5 and 6 were significantly DEGs enriched (Student’s T test: t = 9.9344, df = 27.388, p-value = 1.406e-10). These two enriched regions (mean 17.4 DEGs by Mb) represent 50 Mb in end of X and 10 Mb in beginning of A2. Regions not enriched in DEGs contain on average 1.5 DEGs by Mb.</description><identifier>DOI: 10.6084/m9.figshare.25264477</identifier><language>eng</language><publisher>figshare</publisher><subject>FOS: Biological sciences ; Genetics</subject><creationdate>2024</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>776,1888</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.6084/m9.figshare.25264477$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Huguet, M. D.</creatorcontrib><creatorcontrib>Robin, S.</creatorcontrib><creatorcontrib>Hudaverdian, S.</creatorcontrib><creatorcontrib>Tanguy, S.</creatorcontrib><creatorcontrib>Leterme-Prunier, N.</creatorcontrib><creatorcontrib>Cloteau, R.</creatorcontrib><creatorcontrib>Baulande, S.</creatorcontrib><creatorcontrib>Legoix-Né, P.</creatorcontrib><creatorcontrib>Legeai, F.</creatorcontrib><creatorcontrib>Simon, J.-C.</creatorcontrib><creatorcontrib>Jaquiéry, J.</creatorcontrib><creatorcontrib>Tagu, D.</creatorcontrib><creatorcontrib>Le Trionnaire, G.</creatorcontrib><title>Additional file 2 of Transcriptomic basis of sex loss in the pea aphid</title><description>Supplementary Material 2. Figure S2: Distribution of expressed genes and DEGs from each clusters of embryos transcriptomic analysis. Clusters 1, 2, 3, 4 respectively contains 2742, 3698, 1215, 591 DEGs. The aggregate clusters 5 and 6 contains 1651 DEGs. Distribution of expressed genes (gold) and DEGs from each cluster or aggregate clusters (black) on the three autosomes (A1, A2, A3) and on X chromosome was performed using R project. The y axis represent the number of expressed genes or DEGs by sliding window of 1 Mb (x axis). Two region of aggregate cluster 5 and 6 were significantly DEGs enriched (Student’s T test: t = 9.9344, df = 27.388, p-value = 1.406e-10). These two enriched regions (mean 17.4 DEGs by Mb) represent 50 Mb in end of X and 10 Mb in beginning of A2. Regions not enriched in DEGs contain on average 1.5 DEGs by Mb.</description><subject>FOS: Biological sciences</subject><subject>Genetics</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2024</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNqdzkEKwjAQheFsXIh6AxdzAWtbY2uXIhYP0H0Y28QOJE3IZKG3l4K9gKsHPzz4hNgXeVblF3l0TWboxSNGnZXnspKyrteivQ4DJfITWjBkNZTgDXQRJ-4jheQd9fBEJp476zdYzww0QRo1BI2AYaRhK1YGLevdbzdCtvfu9jgMmLCnpFWI5DB-VJGrmaNcoxaOWjinP29f_QlH_Q</recordid><startdate>20240814</startdate><enddate>20240814</enddate><creator>Huguet, M. D.</creator><creator>Robin, S.</creator><creator>Hudaverdian, S.</creator><creator>Tanguy, S.</creator><creator>Leterme-Prunier, N.</creator><creator>Cloteau, R.</creator><creator>Baulande, S.</creator><creator>Legoix-Né, P.</creator><creator>Legeai, F.</creator><creator>Simon, J.-C.</creator><creator>Jaquiéry, J.</creator><creator>Tagu, D.</creator><creator>Le Trionnaire, G.</creator><general>figshare</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20240814</creationdate><title>Additional file 2 of Transcriptomic basis of sex loss in the pea aphid</title><author>Huguet, M. D. ; Robin, S. ; Hudaverdian, S. ; Tanguy, S. ; Leterme-Prunier, N. ; Cloteau, R. ; Baulande, S. ; Legoix-Né, P. ; Legeai, F. ; Simon, J.-C. ; Jaquiéry, J. ; Tagu, D. ; Le Trionnaire, G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_6084_m9_figshare_252644773</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2024</creationdate><topic>FOS: Biological sciences</topic><topic>Genetics</topic><toplevel>online_resources</toplevel><creatorcontrib>Huguet, M. D.</creatorcontrib><creatorcontrib>Robin, S.</creatorcontrib><creatorcontrib>Hudaverdian, S.</creatorcontrib><creatorcontrib>Tanguy, S.</creatorcontrib><creatorcontrib>Leterme-Prunier, N.</creatorcontrib><creatorcontrib>Cloteau, R.</creatorcontrib><creatorcontrib>Baulande, S.</creatorcontrib><creatorcontrib>Legoix-Né, P.</creatorcontrib><creatorcontrib>Legeai, F.</creatorcontrib><creatorcontrib>Simon, J.-C.</creatorcontrib><creatorcontrib>Jaquiéry, J.</creatorcontrib><creatorcontrib>Tagu, D.</creatorcontrib><creatorcontrib>Le Trionnaire, G.</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Huguet, M. D.</au><au>Robin, S.</au><au>Hudaverdian, S.</au><au>Tanguy, S.</au><au>Leterme-Prunier, N.</au><au>Cloteau, R.</au><au>Baulande, S.</au><au>Legoix-Né, P.</au><au>Legeai, F.</au><au>Simon, J.-C.</au><au>Jaquiéry, J.</au><au>Tagu, D.</au><au>Le Trionnaire, G.</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Additional file 2 of Transcriptomic basis of sex loss in the pea aphid</title><date>2024-08-14</date><risdate>2024</risdate><abstract>Supplementary Material 2. Figure S2: Distribution of expressed genes and DEGs from each clusters of embryos transcriptomic analysis. Clusters 1, 2, 3, 4 respectively contains 2742, 3698, 1215, 591 DEGs. The aggregate clusters 5 and 6 contains 1651 DEGs. Distribution of expressed genes (gold) and DEGs from each cluster or aggregate clusters (black) on the three autosomes (A1, A2, A3) and on X chromosome was performed using R project. The y axis represent the number of expressed genes or DEGs by sliding window of 1 Mb (x axis). Two region of aggregate cluster 5 and 6 were significantly DEGs enriched (Student’s T test: t = 9.9344, df = 27.388, p-value = 1.406e-10). These two enriched regions (mean 17.4 DEGs by Mb) represent 50 Mb in end of X and 10 Mb in beginning of A2. Regions not enriched in DEGs contain on average 1.5 DEGs by Mb.</abstract><pub>figshare</pub><doi>10.6084/m9.figshare.25264477</doi><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext_linktorsrc |
| identifier | DOI: 10.6084/m9.figshare.25264477 |
| ispartof | |
| issn | |
| language | eng |
| recordid | cdi_datacite_primary_10_6084_m9_figshare_25264477 |
| source | DataCite |
| subjects | FOS: Biological sciences Genetics |
| title | Additional file 2 of Transcriptomic basis of sex loss in the pea aphid |
| url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-29T03%3A54%3A51IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-datacite_PQ8&rft_val_fmt=info:ofi/fmt:kev:mtx:book&rft.genre=unknown&rft.au=Huguet,%20M.%20D.&rft.date=2024-08-14&rft_id=info:doi/10.6084/m9.figshare.25264477&rft_dat=%3Cdatacite_PQ8%3E10_6084_m9_figshare_25264477%3C/datacite_PQ8%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true |