Additional file 2 of Transcriptomic analyses of cacao flavonoids produced in photobioreactors
Additional file 2: Table S1. Mapping of Theobroma cacao RNA-seq library reads to the Cacao criollo reference genome database. Table S2. KEGG enrichment annotation for the three pairwaise comparisons in White and Blue conditions. Table S3. List of Transcription factors identified in the DEGs of cacao...
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| creator | Gallego, Adriana M. Rojas, Luisa F. Valencia, Wilmar G. Atehortúa, Lucía Urrea, Aura I. Fister, Andrew S. Guiltinan, Mark J. Maximova, Siela N. Pabón-Mora, Natalia |
| description | Additional file 2: Table S1. Mapping of Theobroma cacao RNA-seq library reads to the Cacao criollo reference genome database. Table S2. KEGG enrichment annotation for the three pairwaise comparisons in White and Blue conditions. Table S3. List of Transcription factors identified in the DEGs of cacao cells in light-treated Bioreactors. Table S4. Annotation and statistical information of photoreceptors identified in the cacao cell bioreactors. Table S5. KEGG metabolic enrichment analysis for ROS markers in cacao DEGs. Table S6. Up and down regulated anotated ROS markers in cacao DEGs for the three pairwise comparisons. Red shadow locus: Upregulated. Blue shadow locus: Downregulated. Table S7. Cacao transcription factor identified in each of three ROS types. Table S8. Primers used for qRT-PCR analysis of flavonoid biosynthesis related genes |
| doi_str_mv | 10.6084/m9.figshare.15020618 |
| format | Dataset |
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Mapping of Theobroma cacao RNA-seq library reads to the Cacao criollo reference genome database. Table S2. KEGG enrichment annotation for the three pairwaise comparisons in White and Blue conditions. Table S3. List of Transcription factors identified in the DEGs of cacao cells in light-treated Bioreactors. Table S4. Annotation and statistical information of photoreceptors identified in the cacao cell bioreactors. Table S5. KEGG metabolic enrichment analysis for ROS markers in cacao DEGs. Table S6. Up and down regulated anotated ROS markers in cacao DEGs for the three pairwise comparisons. Red shadow locus: Upregulated. Blue shadow locus: Downregulated. Table S7. Cacao transcription factor identified in each of three ROS types. Table S8. Primers used for qRT-PCR analysis of flavonoid biosynthesis related genes</abstract><pub>figshare</pub><doi>10.6084/m9.figshare.15020618</doi><orcidid>https://orcid.org/0000-0003-3528-8078</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Biochemistry Biological Sciences not elsewhere classified Biotechnology Cell Biology Chemical Sciences not elsewhere classified Computational Biology Developmental Biology Ecology FOS: Biological sciences FOS: Chemical sciences FOS: Health sciences Genetics Infectious Diseases Mental Health Microbiology Molecular Biology Neuroscience Physiology Plant Biology |
| title | Additional file 2 of Transcriptomic analyses of cacao flavonoids produced in photobioreactors |
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