Additional file 2 of Genetic differentiation and restricted gene flow in rice landraces from Yunnan, China: effects of isolation-by-distance and isolation-by-environment

Additional file 2: Table S1. List of samples included in the study, including their origin and group. Table S2. Summary of sequenced genes and primer sequences used in this study. Table S3. Summary of nucleotide polymorphisms and neutrality tests. Table S4. The genetic diversity of rice landraces ba...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Hauptverfasser: Cui, Di, Tang, Cuifeng, Lu, Hongfeng, Li, Jinmei, Ma, Xiaoding, A, Xinxiang, Han, Bing, Yang, Yayun, Dong, Chao, Zhang, Feifei, Dai, Luyuan, Han, Longzhi
Format: Dataset
Sprache:eng
Schlagworte:
Online-Zugang:Volltext bestellen
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue
container_start_page
container_title
container_volume
creator Cui, Di
Tang, Cuifeng
Lu, Hongfeng
Li, Jinmei
Ma, Xiaoding
A, Xinxiang
Han, Bing
Yang, Yayun
Dong, Chao
Zhang, Feifei
Dai, Luyuan
Han, Longzhi
description Additional file 2: Table S1. List of samples included in the study, including their origin and group. Table S2. Summary of sequenced genes and primer sequences used in this study. Table S3. Summary of nucleotide polymorphisms and neutrality tests. Table S4. The genetic diversity of rice landraces based on 48 SSRs. Table S5. The genetic diversity of rice landraces in each population. Table S6. Putative selective-sweep regions in subgroup jap-N. Table S7. Putative selective-sweep regions in subgroup jap-S. Table S8. Putative selective-sweep regions in subgroup ind-N. Table S9. Putative selective-sweep regions in subgroup ind-S. Table S10. Cloned genes located on the selection-sweep regions. Table S11. QTLs that overlapped with selection-sweep regions. Table S12. SNPs with absolute value greater than 6 for the first three components of 24 environmental factors. Table S13. SNPs with the top 25 highest |z|-scores among those candidate genes with known functions. Table S14. Summary of SSR markers and primer sequences. Table S15. The detailed information of 24 environmental factors in each population. Table S16. Summary of agronomic traits for rice landraces in each population. The value before the slash shows the data collection from Yunnan, and the value after the slash shows the data collection from Hainan.
doi_str_mv 10.6084/m9.figshare.14788422
format Dataset
fullrecord <record><control><sourceid>datacite_PQ8</sourceid><recordid>TN_cdi_datacite_primary_10_6084_m9_figshare_14788422</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_6084_m9_figshare_14788422</sourcerecordid><originalsourceid>FETCH-LOGICAL-d912-6446dd0d3578008d77ce6cdea5dc0a3804b7b7189bff12a3d68dc53168aa2f0f3</originalsourceid><addsrcrecordid>eNpVkLFOw0AMhrMwoMIbMPgBSLkk1-TCVlVQkCqxdGGKnLOvtZRc0OUA9ZF4SxKgA5Ml-_dn60uSm0wtS2X0XV8vnRzGIwZeZroyRuf5ZfK1JpIog8cOnHQMOQwOtuw5igUS5ziwj4JzBtATBB5jEBuZ4DDFwHXDJ4iHqcfQTYmAlkdwYejh9d179LewOYrHe-CJZuM4X5Bx6H6YaXtKScaIflqf-f8m7D8kDL6fXrhKLhx2I1__1UWyf3zYb57S3cv2ebPepVRneVpqXRIpKlaVUcpQVVkuLTGuyCosjNJt1VaZqVvnshwLKg3ZVZGVBjF3yhWLRP9iCSNaidy8BekxnJpMNbPIpq-bs8jmLLL4BmuLc6I</addsrcrecordid><sourcetype>Publisher</sourcetype><iscdi>true</iscdi><recordtype>dataset</recordtype></control><display><type>dataset</type><title>Additional file 2 of Genetic differentiation and restricted gene flow in rice landraces from Yunnan, China: effects of isolation-by-distance and isolation-by-environment</title><source>DataCite</source><creator>Cui, Di ; Tang, Cuifeng ; Lu, Hongfeng ; Li, Jinmei ; Ma, Xiaoding ; A, Xinxiang ; Han, Bing ; Yang, Yayun ; Dong, Chao ; Zhang, Feifei ; Dai, Luyuan ; Han, Longzhi</creator><creatorcontrib>Cui, Di ; Tang, Cuifeng ; Lu, Hongfeng ; Li, Jinmei ; Ma, Xiaoding ; A, Xinxiang ; Han, Bing ; Yang, Yayun ; Dong, Chao ; Zhang, Feifei ; Dai, Luyuan ; Han, Longzhi</creatorcontrib><description>Additional file 2: Table S1. List of samples included in the study, including their origin and group. Table S2. Summary of sequenced genes and primer sequences used in this study. Table S3. Summary of nucleotide polymorphisms and neutrality tests. Table S4. The genetic diversity of rice landraces based on 48 SSRs. Table S5. The genetic diversity of rice landraces in each population. Table S6. Putative selective-sweep regions in subgroup jap-N. Table S7. Putative selective-sweep regions in subgroup jap-S. Table S8. Putative selective-sweep regions in subgroup ind-N. Table S9. Putative selective-sweep regions in subgroup ind-S. Table S10. Cloned genes located on the selection-sweep regions. Table S11. QTLs that overlapped with selection-sweep regions. Table S12. SNPs with absolute value greater than 6 for the first three components of 24 environmental factors. Table S13. SNPs with the top 25 highest |z|-scores among those candidate genes with known functions. Table S14. Summary of SSR markers and primer sequences. Table S15. The detailed information of 24 environmental factors in each population. Table S16. Summary of agronomic traits for rice landraces in each population. The value before the slash shows the data collection from Yunnan, and the value after the slash shows the data collection from Hainan.</description><identifier>DOI: 10.6084/m9.figshare.14788422</identifier><language>eng</language><publisher>figshare</publisher><subject>FOS: Biological sciences ; Genetics</subject><creationdate>2021</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>780,1894</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.6084/m9.figshare.14788422$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Cui, Di</creatorcontrib><creatorcontrib>Tang, Cuifeng</creatorcontrib><creatorcontrib>Lu, Hongfeng</creatorcontrib><creatorcontrib>Li, Jinmei</creatorcontrib><creatorcontrib>Ma, Xiaoding</creatorcontrib><creatorcontrib>A, Xinxiang</creatorcontrib><creatorcontrib>Han, Bing</creatorcontrib><creatorcontrib>Yang, Yayun</creatorcontrib><creatorcontrib>Dong, Chao</creatorcontrib><creatorcontrib>Zhang, Feifei</creatorcontrib><creatorcontrib>Dai, Luyuan</creatorcontrib><creatorcontrib>Han, Longzhi</creatorcontrib><title>Additional file 2 of Genetic differentiation and restricted gene flow in rice landraces from Yunnan, China: effects of isolation-by-distance and isolation-by-environment</title><description>Additional file 2: Table S1. List of samples included in the study, including their origin and group. Table S2. Summary of sequenced genes and primer sequences used in this study. Table S3. Summary of nucleotide polymorphisms and neutrality tests. Table S4. The genetic diversity of rice landraces based on 48 SSRs. Table S5. The genetic diversity of rice landraces in each population. Table S6. Putative selective-sweep regions in subgroup jap-N. Table S7. Putative selective-sweep regions in subgroup jap-S. Table S8. Putative selective-sweep regions in subgroup ind-N. Table S9. Putative selective-sweep regions in subgroup ind-S. Table S10. Cloned genes located on the selection-sweep regions. Table S11. QTLs that overlapped with selection-sweep regions. Table S12. SNPs with absolute value greater than 6 for the first three components of 24 environmental factors. Table S13. SNPs with the top 25 highest |z|-scores among those candidate genes with known functions. Table S14. Summary of SSR markers and primer sequences. Table S15. The detailed information of 24 environmental factors in each population. Table S16. Summary of agronomic traits for rice landraces in each population. The value before the slash shows the data collection from Yunnan, and the value after the slash shows the data collection from Hainan.</description><subject>FOS: Biological sciences</subject><subject>Genetics</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2021</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNpVkLFOw0AMhrMwoMIbMPgBSLkk1-TCVlVQkCqxdGGKnLOvtZRc0OUA9ZF4SxKgA5Ml-_dn60uSm0wtS2X0XV8vnRzGIwZeZroyRuf5ZfK1JpIog8cOnHQMOQwOtuw5igUS5ziwj4JzBtATBB5jEBuZ4DDFwHXDJ4iHqcfQTYmAlkdwYejh9d179LewOYrHe-CJZuM4X5Bx6H6YaXtKScaIflqf-f8m7D8kDL6fXrhKLhx2I1__1UWyf3zYb57S3cv2ebPepVRneVpqXRIpKlaVUcpQVVkuLTGuyCosjNJt1VaZqVvnshwLKg3ZVZGVBjF3yhWLRP9iCSNaidy8BekxnJpMNbPIpq-bs8jmLLL4BmuLc6I</recordid><startdate>20210616</startdate><enddate>20210616</enddate><creator>Cui, Di</creator><creator>Tang, Cuifeng</creator><creator>Lu, Hongfeng</creator><creator>Li, Jinmei</creator><creator>Ma, Xiaoding</creator><creator>A, Xinxiang</creator><creator>Han, Bing</creator><creator>Yang, Yayun</creator><creator>Dong, Chao</creator><creator>Zhang, Feifei</creator><creator>Dai, Luyuan</creator><creator>Han, Longzhi</creator><general>figshare</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20210616</creationdate><title>Additional file 2 of Genetic differentiation and restricted gene flow in rice landraces from Yunnan, China: effects of isolation-by-distance and isolation-by-environment</title><author>Cui, Di ; Tang, Cuifeng ; Lu, Hongfeng ; Li, Jinmei ; Ma, Xiaoding ; A, Xinxiang ; Han, Bing ; Yang, Yayun ; Dong, Chao ; Zhang, Feifei ; Dai, Luyuan ; Han, Longzhi</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-d912-6446dd0d3578008d77ce6cdea5dc0a3804b7b7189bff12a3d68dc53168aa2f0f3</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2021</creationdate><topic>FOS: Biological sciences</topic><topic>Genetics</topic><toplevel>online_resources</toplevel><creatorcontrib>Cui, Di</creatorcontrib><creatorcontrib>Tang, Cuifeng</creatorcontrib><creatorcontrib>Lu, Hongfeng</creatorcontrib><creatorcontrib>Li, Jinmei</creatorcontrib><creatorcontrib>Ma, Xiaoding</creatorcontrib><creatorcontrib>A, Xinxiang</creatorcontrib><creatorcontrib>Han, Bing</creatorcontrib><creatorcontrib>Yang, Yayun</creatorcontrib><creatorcontrib>Dong, Chao</creatorcontrib><creatorcontrib>Zhang, Feifei</creatorcontrib><creatorcontrib>Dai, Luyuan</creatorcontrib><creatorcontrib>Han, Longzhi</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Cui, Di</au><au>Tang, Cuifeng</au><au>Lu, Hongfeng</au><au>Li, Jinmei</au><au>Ma, Xiaoding</au><au>A, Xinxiang</au><au>Han, Bing</au><au>Yang, Yayun</au><au>Dong, Chao</au><au>Zhang, Feifei</au><au>Dai, Luyuan</au><au>Han, Longzhi</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Additional file 2 of Genetic differentiation and restricted gene flow in rice landraces from Yunnan, China: effects of isolation-by-distance and isolation-by-environment</title><date>2021-06-16</date><risdate>2021</risdate><abstract>Additional file 2: Table S1. List of samples included in the study, including their origin and group. Table S2. Summary of sequenced genes and primer sequences used in this study. Table S3. Summary of nucleotide polymorphisms and neutrality tests. Table S4. The genetic diversity of rice landraces based on 48 SSRs. Table S5. The genetic diversity of rice landraces in each population. Table S6. Putative selective-sweep regions in subgroup jap-N. Table S7. Putative selective-sweep regions in subgroup jap-S. Table S8. Putative selective-sweep regions in subgroup ind-N. Table S9. Putative selective-sweep regions in subgroup ind-S. Table S10. Cloned genes located on the selection-sweep regions. Table S11. QTLs that overlapped with selection-sweep regions. Table S12. SNPs with absolute value greater than 6 for the first three components of 24 environmental factors. Table S13. SNPs with the top 25 highest |z|-scores among those candidate genes with known functions. Table S14. Summary of SSR markers and primer sequences. Table S15. The detailed information of 24 environmental factors in each population. Table S16. Summary of agronomic traits for rice landraces in each population. The value before the slash shows the data collection from Yunnan, and the value after the slash shows the data collection from Hainan.</abstract><pub>figshare</pub><doi>10.6084/m9.figshare.14788422</doi><oa>free_for_read</oa></addata></record>
fulltext fulltext_linktorsrc
identifier DOI: 10.6084/m9.figshare.14788422
ispartof
issn
language eng
recordid cdi_datacite_primary_10_6084_m9_figshare_14788422
source DataCite
subjects FOS: Biological sciences
Genetics
title Additional file 2 of Genetic differentiation and restricted gene flow in rice landraces from Yunnan, China: effects of isolation-by-distance and isolation-by-environment
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-24T13%3A29%3A18IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-datacite_PQ8&rft_val_fmt=info:ofi/fmt:kev:mtx:book&rft.genre=unknown&rft.au=Cui,%20Di&rft.date=2021-06-16&rft_id=info:doi/10.6084/m9.figshare.14788422&rft_dat=%3Cdatacite_PQ8%3E10_6084_m9_figshare_14788422%3C/datacite_PQ8%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true