Development and validation of SNP assays for the selection of resistance to Meloidogyne incognita in soybean
Abstract This work aimed to develop and validate individual SNP molecular markers previously identified in a genetic association study of resistance to Meloidogyne incognita in soybean using a microarray panel. The markers identified in the array were converted in single TaqMan® markers. The single...
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creator | Dubiela, Carla Tatiane Dalla Nora Montecelli Lazzari, Fabiane Souto, Eliezer Rodrigues De Schuster, Ivan |
description | Abstract This work aimed to develop and validate individual SNP molecular markers previously identified in a genetic association study of resistance to Meloidogyne incognita in soybean using a microarray panel. The markers identified in the array were converted in single TaqMan® markers. The single markers were used to create an SNP genotyping protocol and establish a marker-assisted selection (MAS) routine associated with resistance to M. incognita in soybean. Out of the eight TaqMan® assays tested, three were validated for use in MAS. The MAS protocol developed in this study uses sequential selection. Initially, molecular markers are used to identify susceptible plants; subsequently, the phenotypic evaluation of plants expressing resistance genotype for the markers is carried out, resulting in the accurate identification of resistant plants. The accuracy of this approach for MAS sequential for M. incognita varied from 94 to 96%. |
doi_str_mv | 10.6084/m9.figshare.14328666 |
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The markers identified in the array were converted in single TaqMan® markers. The single markers were used to create an SNP genotyping protocol and establish a marker-assisted selection (MAS) routine associated with resistance to M. incognita in soybean. Out of the eight TaqMan® assays tested, three were validated for use in MAS. The MAS protocol developed in this study uses sequential selection. Initially, molecular markers are used to identify susceptible plants; subsequently, the phenotypic evaluation of plants expressing resistance genotype for the markers is carried out, resulting in the accurate identification of resistant plants. The accuracy of this approach for MAS sequential for M. incognita varied from 94 to 96%.</description><identifier>DOI: 10.6084/m9.figshare.14328666</identifier><language>eng</language><publisher>SciELO journals</publisher><subject>Agricultural Biotechnology not elsewhere classified ; Biotechnology ; FOS: Agricultural biotechnology</subject><creationdate>2021</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>781,1895</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.6084/m9.figshare.14328666$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Dubiela, Carla</creatorcontrib><creatorcontrib>Tatiane Dalla Nora Montecelli</creatorcontrib><creatorcontrib>Lazzari, Fabiane</creatorcontrib><creatorcontrib>Souto, Eliezer Rodrigues De</creatorcontrib><creatorcontrib>Schuster, Ivan</creatorcontrib><title>Development and validation of SNP assays for the selection of resistance to Meloidogyne incognita in soybean</title><description>Abstract This work aimed to develop and validate individual SNP molecular markers previously identified in a genetic association study of resistance to Meloidogyne incognita in soybean using a microarray panel. The markers identified in the array were converted in single TaqMan® markers. The single markers were used to create an SNP genotyping protocol and establish a marker-assisted selection (MAS) routine associated with resistance to M. incognita in soybean. Out of the eight TaqMan® assays tested, three were validated for use in MAS. The MAS protocol developed in this study uses sequential selection. Initially, molecular markers are used to identify susceptible plants; subsequently, the phenotypic evaluation of plants expressing resistance genotype for the markers is carried out, resulting in the accurate identification of resistant plants. The accuracy of this approach for MAS sequential for M. incognita varied from 94 to 96%.</description><subject>Agricultural Biotechnology not elsewhere classified</subject><subject>Biotechnology</subject><subject>FOS: Agricultural biotechnology</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2021</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNo1kMtqwzAURLXpoqT9gy70A3b1smwtS_qE9AHp3lxbV47AloIlAv77urRezcDAgTmE3HFWatao-8mUzg_pBDOWXEnRaK2vyfiIFxzjecKQKQRLLzB6C9nHQKOjx48vCinBkqiLM80npAlH7Ld9xuRThtAjzZG-ryRv47AEpD70cQg-w9poikuHEG7IlYMx4e1_7sjx-el7_1ocPl_e9g-HwhquCw2WSW46w1mtLMqu7gSIWjYV57U0usbOomuk7bCRTHElbCUVd5WoBFghd0T9Udcb0PuM7Xn2E8xLy1n7q6KdTLupaDcV8gfpTlvr</recordid><startdate>20210326</startdate><enddate>20210326</enddate><creator>Dubiela, Carla</creator><creator>Tatiane Dalla Nora Montecelli</creator><creator>Lazzari, Fabiane</creator><creator>Souto, Eliezer Rodrigues De</creator><creator>Schuster, Ivan</creator><general>SciELO journals</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20210326</creationdate><title>Development and validation of SNP assays for the selection of resistance to Meloidogyne incognita in soybean</title><author>Dubiela, Carla ; Tatiane Dalla Nora Montecelli ; Lazzari, Fabiane ; Souto, Eliezer Rodrigues De ; Schuster, Ivan</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-d916-6ad0319b91074de3b7b2a273851173967ebdef83dbe8304142d5341f5252ad23</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Agricultural Biotechnology not elsewhere classified</topic><topic>Biotechnology</topic><topic>FOS: Agricultural biotechnology</topic><toplevel>online_resources</toplevel><creatorcontrib>Dubiela, Carla</creatorcontrib><creatorcontrib>Tatiane Dalla Nora Montecelli</creatorcontrib><creatorcontrib>Lazzari, Fabiane</creatorcontrib><creatorcontrib>Souto, Eliezer Rodrigues De</creatorcontrib><creatorcontrib>Schuster, Ivan</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Dubiela, Carla</au><au>Tatiane Dalla Nora Montecelli</au><au>Lazzari, Fabiane</au><au>Souto, Eliezer Rodrigues De</au><au>Schuster, Ivan</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Development and validation of SNP assays for the selection of resistance to Meloidogyne incognita in soybean</title><date>2021-03-26</date><risdate>2021</risdate><abstract>Abstract This work aimed to develop and validate individual SNP molecular markers previously identified in a genetic association study of resistance to Meloidogyne incognita in soybean using a microarray panel. The markers identified in the array were converted in single TaqMan® markers. The single markers were used to create an SNP genotyping protocol and establish a marker-assisted selection (MAS) routine associated with resistance to M. incognita in soybean. Out of the eight TaqMan® assays tested, three were validated for use in MAS. The MAS protocol developed in this study uses sequential selection. Initially, molecular markers are used to identify susceptible plants; subsequently, the phenotypic evaluation of plants expressing resistance genotype for the markers is carried out, resulting in the accurate identification of resistant plants. The accuracy of this approach for MAS sequential for M. incognita varied from 94 to 96%.</abstract><pub>SciELO journals</pub><doi>10.6084/m9.figshare.14328666</doi><oa>free_for_read</oa></addata></record> |
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subjects | Agricultural Biotechnology not elsewhere classified Biotechnology FOS: Agricultural biotechnology |
title | Development and validation of SNP assays for the selection of resistance to Meloidogyne incognita in soybean |
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