Additional file 1 of Assessing optimal: inequalities in codon optimization algorithms

Additional file 1 Spreadsheet containing DNA sequences and tabulated data presented in this work. Table 1. Raw and normalized counts for human recombinant proteins from different expression systems that were collected from the RCSB PDB on July 23, 2019. Table 2. RCSU data for Fig. 2 heat map describ...

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Hauptverfasser: Ranaghan, Matthew J., Li, Jeffrey J., Laprise, Dylan M., Garvie, Colin W.
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Sprache:eng
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Zusammenfassung:Additional file 1 Spreadsheet containing DNA sequences and tabulated data presented in this work. Table 1. Raw and normalized counts for human recombinant proteins from different expression systems that were collected from the RCSB PDB on July 23, 2019. Table 2. RCSU data for Fig. 2 heat map describing codon frequencies in E. coli. Table 3. KRas4B Sequences from various algorithms; and Data for Fig. 3 violin plots and %MinMax heatmaps for native and vendor algorithm optimized CDSs. Table 4. DNA outputs from optimization algorithms collected while testing reproducibility for three proteins.
DOI:10.6084/m9.figshare.14067969