miRBench datasets
## Changelog PhyloP and PhastCons conservation scores for the target gene sequence have been added to the AGO_eCLIP_Manakov2022 datasets as two additional columns - 'gene_phyloP' and' gene_phastCons'. Both of new columns contain list of conservation scores rounded to 3 decimal p...
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| creator | Gresova, Katarina Sammut, Stephanie Tzimotoudis, Dimosthenis Klimentova, Eva Cechak, David Alexiou, Panagiotis |
| description | ## Changelog
PhyloP and PhastCons conservation scores for the target gene sequence have been added to the AGO_eCLIP_Manakov2022 datasets as two additional columns - 'gene_phyloP' and' gene_phastCons'.
Both of new columns contain list of conservation scores rounded to 3 decimal places, one score for each nucelotide in the gene sequence.PhyloP and PhastCons scores were obtained from:
https://hgdownload.cse.ucsc.edu/goldenPath/hg38/phyloP100way/hg38.phyloP100way.bw
https://hgdownload.cse.ucsc.edu/goldenpath/hg38/phastCons100way/hg38.phastCons100way.bw
Downloaded on 15 September 2024. |
| doi_str_mv | 10.5281/zenodo.11657637 |
| format | Dataset |
| fullrecord | <record><control><sourceid>datacite_PQ8</sourceid><recordid>TN_cdi_datacite_primary_10_5281_zenodo_11657637</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_5281_zenodo_11657637</sourcerecordid><originalsourceid>FETCH-datacite_primary_10_5281_zenodo_116576373</originalsourceid><addsrcrecordid>eNpjYBA3NNAzNbIw1K9KzctPydczNDQzNTczNudkEMzNDHJKzUvOUEhJLEksTi0p5mFgTUvMKU7lhdLcDPpuriHOHrogBcmZJanxBUWZuYlFlfGGBvEgQ-MhhsbDDDUmXQcAoa4v5w</addsrcrecordid><sourcetype>Publisher</sourcetype><iscdi>true</iscdi><recordtype>dataset</recordtype></control><display><type>dataset</type><title>miRBench datasets</title><source>DataCite</source><creator>Gresova, Katarina ; Sammut, Stephanie ; Tzimotoudis, Dimosthenis ; Klimentova, Eva ; Cechak, David ; Alexiou, Panagiotis</creator><creatorcontrib>Gresova, Katarina ; Sammut, Stephanie ; Tzimotoudis, Dimosthenis ; Klimentova, Eva ; Cechak, David ; Alexiou, Panagiotis</creatorcontrib><description>## Changelog
PhyloP and PhastCons conservation scores for the target gene sequence have been added to the AGO_eCLIP_Manakov2022 datasets as two additional columns - 'gene_phyloP' and' gene_phastCons'.
Both of new columns contain list of conservation scores rounded to 3 decimal places, one score for each nucelotide in the gene sequence.PhyloP and PhastCons scores were obtained from:
https://hgdownload.cse.ucsc.edu/goldenPath/hg38/phyloP100way/hg38.phyloP100way.bw
https://hgdownload.cse.ucsc.edu/goldenpath/hg38/phastCons100way/hg38.phastCons100way.bw
Downloaded on 15 September 2024. </description><identifier>DOI: 10.5281/zenodo.11657637</identifier><language>eng</language><publisher>Zenodo</publisher><creationdate>2024</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0002-1136-0832 ; 0000-0003-3437-7482 ; 0009-0006-1946-2661</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>776,1888</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.5281/zenodo.11657637$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Gresova, Katarina</creatorcontrib><creatorcontrib>Sammut, Stephanie</creatorcontrib><creatorcontrib>Tzimotoudis, Dimosthenis</creatorcontrib><creatorcontrib>Klimentova, Eva</creatorcontrib><creatorcontrib>Cechak, David</creatorcontrib><creatorcontrib>Alexiou, Panagiotis</creatorcontrib><title>miRBench datasets</title><description>## Changelog
PhyloP and PhastCons conservation scores for the target gene sequence have been added to the AGO_eCLIP_Manakov2022 datasets as two additional columns - 'gene_phyloP' and' gene_phastCons'.
Both of new columns contain list of conservation scores rounded to 3 decimal places, one score for each nucelotide in the gene sequence.PhyloP and PhastCons scores were obtained from:
https://hgdownload.cse.ucsc.edu/goldenPath/hg38/phyloP100way/hg38.phyloP100way.bw
https://hgdownload.cse.ucsc.edu/goldenpath/hg38/phastCons100way/hg38.phastCons100way.bw
Downloaded on 15 September 2024. </description><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2024</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNpjYBA3NNAzNbIw1K9KzctPydczNDQzNTczNudkEMzNDHJKzUvOUEhJLEksTi0p5mFgTUvMKU7lhdLcDPpuriHOHrogBcmZJanxBUWZuYlFlfGGBvEgQ-MhhsbDDDUmXQcAoa4v5w</recordid><startdate>20241105</startdate><enddate>20241105</enddate><creator>Gresova, Katarina</creator><creator>Sammut, Stephanie</creator><creator>Tzimotoudis, Dimosthenis</creator><creator>Klimentova, Eva</creator><creator>Cechak, David</creator><creator>Alexiou, Panagiotis</creator><general>Zenodo</general><scope>DYCCY</scope><scope>PQ8</scope><orcidid>https://orcid.org/0000-0002-1136-0832</orcidid><orcidid>https://orcid.org/0000-0003-3437-7482</orcidid><orcidid>https://orcid.org/0009-0006-1946-2661</orcidid></search><sort><creationdate>20241105</creationdate><title>miRBench datasets</title><author>Gresova, Katarina ; Sammut, Stephanie ; Tzimotoudis, Dimosthenis ; Klimentova, Eva ; Cechak, David ; Alexiou, Panagiotis</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_5281_zenodo_116576373</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2024</creationdate><toplevel>online_resources</toplevel><creatorcontrib>Gresova, Katarina</creatorcontrib><creatorcontrib>Sammut, Stephanie</creatorcontrib><creatorcontrib>Tzimotoudis, Dimosthenis</creatorcontrib><creatorcontrib>Klimentova, Eva</creatorcontrib><creatorcontrib>Cechak, David</creatorcontrib><creatorcontrib>Alexiou, Panagiotis</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Gresova, Katarina</au><au>Sammut, Stephanie</au><au>Tzimotoudis, Dimosthenis</au><au>Klimentova, Eva</au><au>Cechak, David</au><au>Alexiou, Panagiotis</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>miRBench datasets</title><date>2024-11-05</date><risdate>2024</risdate><abstract>## Changelog
PhyloP and PhastCons conservation scores for the target gene sequence have been added to the AGO_eCLIP_Manakov2022 datasets as two additional columns - 'gene_phyloP' and' gene_phastCons'.
Both of new columns contain list of conservation scores rounded to 3 decimal places, one score for each nucelotide in the gene sequence.PhyloP and PhastCons scores were obtained from:
https://hgdownload.cse.ucsc.edu/goldenPath/hg38/phyloP100way/hg38.phyloP100way.bw
https://hgdownload.cse.ucsc.edu/goldenpath/hg38/phastCons100way/hg38.phastCons100way.bw
Downloaded on 15 September 2024. </abstract><pub>Zenodo</pub><doi>10.5281/zenodo.11657637</doi><orcidid>https://orcid.org/0000-0002-1136-0832</orcidid><orcidid>https://orcid.org/0000-0003-3437-7482</orcidid><orcidid>https://orcid.org/0009-0006-1946-2661</orcidid><oa>free_for_read</oa></addata></record> |
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| identifier | DOI: 10.5281/zenodo.11657637 |
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| language | eng |
| recordid | cdi_datacite_primary_10_5281_zenodo_11657637 |
| source | DataCite |
| title | miRBench datasets |
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