Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic

Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic Code used for plotting of main figures and quantifying allelic shifts attached in the GitHub repository CareyMetheringham/MardenPark. Additional files for analysis of GEBV shifts between adults and...

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Hauptverfasser: Metheringham, Carey, Nichols, Richard Alan, Buggs, Richard, Flynn, William
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creator Metheringham, Carey
Nichols, Richard Alan
Buggs, Richard
Flynn, William
description Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic Code used for plotting of main figures and quantifying allelic shifts attached in the GitHub repository CareyMetheringham/MardenPark. Additional files for analysis of GEBV shifts between adults and juveniles, estimation of heritability, trends in green up and simulations of allelic shifts included as: GEBV-regression.Rmd heritabilityEst.R GreeningAnalysis.R Simulated_selection_analysis.Rmd Data files: S1 - phenotypic measurements for adult and juvenile trees S2 - Effect sizes for SNPs used to calculate GEBV S3 - Allelic frequencies of sites used to calculate GEBV related_trees.csv - Predicted parentage of trees gebv_model_df.csv - Data used for greenup calculations in GreeningAnalysis.R maf1.pass2.miss25.snps.only.LD.vcf - Filtered file of high MAF SNPs used for parentage estimation unlinked_sites.csv - unlinked sites used in GEBV-regression.Rmd ebv_table_10000_250 - table of estimated breeding values in field trial populatio, used for heritability estimation
doi_str_mv 10.5281/zenodo.10808942
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title Dataset for Rapid polygenic adaptation in a wild population of ash trees under a novel fungal epidemic
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