Metagenomics Dataset of Aerobic Granular Sludge

Abstract  Aerobic granular sludge was cultivated in a sequencing batch reactor (SRB) fed with either volatile fatty acids (VFA), a mixture of complex monomeric substrates (CM), or a mixture of complex polymeric substrates (CP). Samples were taken during periods where the SBR was operated with the di...

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Hauptverfasser: Saini, Jaspreet Singh, Adler, Aline, Cardona, Laëtitia, Rodilla-Ramírez, Pilar Natalia, Pei, Ruizhe, Holliger, Christof
Format: Dataset
Sprache:eng
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Zusammenfassung:Abstract  Aerobic granular sludge was cultivated in a sequencing batch reactor (SRB) fed with either volatile fatty acids (VFA), a mixture of complex monomeric substrates (CM), or a mixture of complex polymeric substrates (CP). Samples were taken during periods where the SBR was operated with the different carbon source mixtures: VFA (day 71), CM (day 322 and 427), and CP (day 740). Metagenomic DNA was sequenced and this study utilizes the dataset PRJEB38840 (Adler et al 2022 Sfam) to construct Metagenome-assembled genomes (MAGs) using two distinct workflows (A and B), making a in-house genome collection of 759 MAGs in total, from which 331 remained after dereplication step. Data including metagenomic assemblies, MAGs and its associated metadata are added to this Zenodo collection.
DOI:10.5281/zenodo.10229272