FESNov gene families

Functionally and Evolutionarily Significant Novel (FESNov) gene family predictions. This repository includes: GTBD r202 taxonomic labels for all the genomes analyzed (genome2taxonomy.r202.tab) Plasflow and Seeker predictions for all the genomes analyzed (plasflow.json.gz and seeker.json.gz) Fasta fi...

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Hauptverfasser: Rodriguez del Rio, Alvaro, Giner-Lamia, Joaquín, P. Cantalapiedra, Carlos, Botas, Jorge, Deng, Ziqi, Hernandez-Plaza, Ana, Marti, Munar-Palmer, Santamaría-Hernando, Saray, Rodríguez-Herva, Jose J, Ruscheweyh, Hans-Joachim, Paoli, Lucas, S.B. Schmidt, Thomas, Sunagawa, Sinichi, Bork, Peer, Emilia, López-Solanilla, Luis Pedro, Coelho, Huerta-Cepas, Jaime
Format: Dataset
Sprache:eng
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Beschreibung
Zusammenfassung:Functionally and Evolutionarily Significant Novel (FESNov) gene family predictions. This repository includes: GTBD r202 taxonomic labels for all the genomes analyzed (genome2taxonomy.r202.tab) Plasflow and Seeker predictions for all the genomes analyzed (plasflow.json.gz and seeker.json.gz) Fasta files for each FESNov gene family (FESNov_families.fasta.tar.gz) Gene family trees for each FESNov gene family (FESNov_families.trees.tar.gz) HMM profiles for each FESNov gene family (FESNov_families.hmm.tar.gz) FESNov gene family statistics (FESNov_fams_stats.tab) Functional predictions and habitat distribution of all FESNov gene families (FESNov_fams_funct_hab_info.json.gz) FESNov gene family PDB files with structure predictions by AlphaFold (FESNov_families.pdb.tar.gz), and their associated pLDDT values (pLDDT_values.tab)
DOI:10.5281/zenodo.10219528