Impact of Image Processing Settings for Radiomic Features in Alzheimer's Disease Using 18F-FDG and 11C-PIB PET Scans

Radiomics is an established method for calculating features for computer-aided diagnosis and has been vastly applied to oncological studies. This study aimed to assess the impact of image processing in radiomic features in neuroimaging. Fifteen Alzheimer's disease subjects and 18 healthy indivi...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Hauptverfasser: Peretti, Débora Elisa, Kolinger, Guilherme Domingues, Pfaehler, Elisabeth A, Reesink, Fransje E, de Jong, Bauke M, De Deyn, Peter P., Dierckx, Rudi A J O, Vállez García, David, Boellard, Ronald
Format: Dataset
Sprache:eng
Online-Zugang:Volltext bestellen
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue
container_start_page
container_title
container_volume
creator Peretti, Débora Elisa
Kolinger, Guilherme Domingues
Pfaehler, Elisabeth A
Reesink, Fransje E
de Jong, Bauke M
De Deyn, Peter P.
Dierckx, Rudi A J O
Vállez García, David
Boellard, Ronald
description Radiomics is an established method for calculating features for computer-aided diagnosis and has been vastly applied to oncological studies. This study aimed to assess the impact of image processing in radiomic features in neuroimaging. Fifteen Alzheimer's disease subjects and 18 healthy individuals underwent [18F]-2-fluoro-2-deoxy-D-glucose (FDG) and 11C-labelled Pittsburgh Compound B (PIB) PET scans. T1-MRI scans were used for cerebellar and grey matter (GM), and white matter (WM) tissue delineation. PET images were registered to MRI (MR space) and transformed to MNI space. All images were normalized to cerebellar uptake (SUVR). All possible combinations of the following settings were considered to extract feature values: (1)tracer: FDG or PIB; (2)space: MR or MNI space; (3)discretization: fixed bin number (BN) of 64, fixed bin sizes (BS) of 0.05 or 0.25; and (4)volume of interest (VOI): GM, WM, or BRAIN (GM+WM). Features that correlated (>0.9) to traditional metrics (average VOI SUVR and volume) in any configuration were removed. Correlation of feature values between configurations, redundancy, and harmonization of feature values were tested. Image processing settings highly affect radiomic feature values and should be carefully taken into consideration during study design and should be properly reported.   The enclosed datasets refer to the work developed at the University Medical Center Groningen and consists of extracted feature values used in the publication.
doi_str_mv 10.5281/zenodo.10125829
format Dataset
fullrecord <record><control><sourceid>datacite_PQ8</sourceid><recordid>TN_cdi_datacite_primary_10_5281_zenodo_10125829</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_5281_zenodo_10125829</sourcerecordid><originalsourceid>FETCH-datacite_primary_10_5281_zenodo_101258293</originalsourceid><addsrcrecordid>eNqVzjkOwjAQQFE3FAioaaejCsRBSKFkC6SLWGpr5EzAEraRxxRwevYDUP3qS0-IvkyHkyyXozs5X_uhTGU2ybNpW8TSXlBH8A2UFo8EVfCamI07wo5ifJah8QG2WBtvjYaCMF4DMRgHs_P9RMZSGDAsDRMyweH9yrxIiuUa0NUg5SKpyjlUqz3sNDruilaDZ6betx0xKlb7xSapMaI2kdQlGIvhpmSqXm71caufe_z_8QB7OlEn</addsrcrecordid><sourcetype>Publisher</sourcetype><iscdi>true</iscdi><recordtype>dataset</recordtype></control><display><type>dataset</type><title>Impact of Image Processing Settings for Radiomic Features in Alzheimer's Disease Using 18F-FDG and 11C-PIB PET Scans</title><source>DataCite</source><creator>Peretti, Débora Elisa ; Kolinger, Guilherme Domingues ; Pfaehler, Elisabeth A ; Reesink, Fransje E ; de Jong, Bauke M ; De Deyn, Peter P. ; Dierckx, Rudi A J O ; Vállez García, David ; Boellard, Ronald</creator><creatorcontrib>Peretti, Débora Elisa ; Kolinger, Guilherme Domingues ; Pfaehler, Elisabeth A ; Reesink, Fransje E ; de Jong, Bauke M ; De Deyn, Peter P. ; Dierckx, Rudi A J O ; Vállez García, David ; Boellard, Ronald</creatorcontrib><description>Radiomics is an established method for calculating features for computer-aided diagnosis and has been vastly applied to oncological studies. This study aimed to assess the impact of image processing in radiomic features in neuroimaging. Fifteen Alzheimer's disease subjects and 18 healthy individuals underwent [18F]-2-fluoro-2-deoxy-D-glucose (FDG) and 11C-labelled Pittsburgh Compound B (PIB) PET scans. T1-MRI scans were used for cerebellar and grey matter (GM), and white matter (WM) tissue delineation. PET images were registered to MRI (MR space) and transformed to MNI space. All images were normalized to cerebellar uptake (SUVR). All possible combinations of the following settings were considered to extract feature values: (1)tracer: FDG or PIB; (2)space: MR or MNI space; (3)discretization: fixed bin number (BN) of 64, fixed bin sizes (BS) of 0.05 or 0.25; and (4)volume of interest (VOI): GM, WM, or BRAIN (GM+WM). Features that correlated (&gt;0.9) to traditional metrics (average VOI SUVR and volume) in any configuration were removed. Correlation of feature values between configurations, redundancy, and harmonization of feature values were tested. Image processing settings highly affect radiomic feature values and should be carefully taken into consideration during study design and should be properly reported.   The enclosed datasets refer to the work developed at the University Medical Center Groningen and consists of extracted feature values used in the publication.</description><identifier>DOI: 10.5281/zenodo.10125829</identifier><language>eng</language><publisher>Zenodo</publisher><creationdate>2023</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0002-0313-5686 ; 0000-0002-3033-8817 ; 0000-0003-3308-3167</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>780,1893</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.5281/zenodo.10125829$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Peretti, Débora Elisa</creatorcontrib><creatorcontrib>Kolinger, Guilherme Domingues</creatorcontrib><creatorcontrib>Pfaehler, Elisabeth A</creatorcontrib><creatorcontrib>Reesink, Fransje E</creatorcontrib><creatorcontrib>de Jong, Bauke M</creatorcontrib><creatorcontrib>De Deyn, Peter P.</creatorcontrib><creatorcontrib>Dierckx, Rudi A J O</creatorcontrib><creatorcontrib>Vállez García, David</creatorcontrib><creatorcontrib>Boellard, Ronald</creatorcontrib><title>Impact of Image Processing Settings for Radiomic Features in Alzheimer's Disease Using 18F-FDG and 11C-PIB PET Scans</title><description>Radiomics is an established method for calculating features for computer-aided diagnosis and has been vastly applied to oncological studies. This study aimed to assess the impact of image processing in radiomic features in neuroimaging. Fifteen Alzheimer's disease subjects and 18 healthy individuals underwent [18F]-2-fluoro-2-deoxy-D-glucose (FDG) and 11C-labelled Pittsburgh Compound B (PIB) PET scans. T1-MRI scans were used for cerebellar and grey matter (GM), and white matter (WM) tissue delineation. PET images were registered to MRI (MR space) and transformed to MNI space. All images were normalized to cerebellar uptake (SUVR). All possible combinations of the following settings were considered to extract feature values: (1)tracer: FDG or PIB; (2)space: MR or MNI space; (3)discretization: fixed bin number (BN) of 64, fixed bin sizes (BS) of 0.05 or 0.25; and (4)volume of interest (VOI): GM, WM, or BRAIN (GM+WM). Features that correlated (&gt;0.9) to traditional metrics (average VOI SUVR and volume) in any configuration were removed. Correlation of feature values between configurations, redundancy, and harmonization of feature values were tested. Image processing settings highly affect radiomic feature values and should be carefully taken into consideration during study design and should be properly reported.   The enclosed datasets refer to the work developed at the University Medical Center Groningen and consists of extracted feature values used in the publication.</description><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2023</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNqVzjkOwjAQQFE3FAioaaejCsRBSKFkC6SLWGpr5EzAEraRxxRwevYDUP3qS0-IvkyHkyyXozs5X_uhTGU2ybNpW8TSXlBH8A2UFo8EVfCamI07wo5ifJah8QG2WBtvjYaCMF4DMRgHs_P9RMZSGDAsDRMyweH9yrxIiuUa0NUg5SKpyjlUqz3sNDruilaDZ6betx0xKlb7xSapMaI2kdQlGIvhpmSqXm71caufe_z_8QB7OlEn</recordid><startdate>20231114</startdate><enddate>20231114</enddate><creator>Peretti, Débora Elisa</creator><creator>Kolinger, Guilherme Domingues</creator><creator>Pfaehler, Elisabeth A</creator><creator>Reesink, Fransje E</creator><creator>de Jong, Bauke M</creator><creator>De Deyn, Peter P.</creator><creator>Dierckx, Rudi A J O</creator><creator>Vállez García, David</creator><creator>Boellard, Ronald</creator><general>Zenodo</general><scope>DYCCY</scope><scope>PQ8</scope><orcidid>https://orcid.org/0000-0002-0313-5686</orcidid><orcidid>https://orcid.org/0000-0002-3033-8817</orcidid><orcidid>https://orcid.org/0000-0003-3308-3167</orcidid></search><sort><creationdate>20231114</creationdate><title>Impact of Image Processing Settings for Radiomic Features in Alzheimer's Disease Using 18F-FDG and 11C-PIB PET Scans</title><author>Peretti, Débora Elisa ; Kolinger, Guilherme Domingues ; Pfaehler, Elisabeth A ; Reesink, Fransje E ; de Jong, Bauke M ; De Deyn, Peter P. ; Dierckx, Rudi A J O ; Vállez García, David ; Boellard, Ronald</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_5281_zenodo_101258293</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2023</creationdate><toplevel>online_resources</toplevel><creatorcontrib>Peretti, Débora Elisa</creatorcontrib><creatorcontrib>Kolinger, Guilherme Domingues</creatorcontrib><creatorcontrib>Pfaehler, Elisabeth A</creatorcontrib><creatorcontrib>Reesink, Fransje E</creatorcontrib><creatorcontrib>de Jong, Bauke M</creatorcontrib><creatorcontrib>De Deyn, Peter P.</creatorcontrib><creatorcontrib>Dierckx, Rudi A J O</creatorcontrib><creatorcontrib>Vállez García, David</creatorcontrib><creatorcontrib>Boellard, Ronald</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Peretti, Débora Elisa</au><au>Kolinger, Guilherme Domingues</au><au>Pfaehler, Elisabeth A</au><au>Reesink, Fransje E</au><au>de Jong, Bauke M</au><au>De Deyn, Peter P.</au><au>Dierckx, Rudi A J O</au><au>Vállez García, David</au><au>Boellard, Ronald</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Impact of Image Processing Settings for Radiomic Features in Alzheimer's Disease Using 18F-FDG and 11C-PIB PET Scans</title><date>2023-11-14</date><risdate>2023</risdate><abstract>Radiomics is an established method for calculating features for computer-aided diagnosis and has been vastly applied to oncological studies. This study aimed to assess the impact of image processing in radiomic features in neuroimaging. Fifteen Alzheimer's disease subjects and 18 healthy individuals underwent [18F]-2-fluoro-2-deoxy-D-glucose (FDG) and 11C-labelled Pittsburgh Compound B (PIB) PET scans. T1-MRI scans were used for cerebellar and grey matter (GM), and white matter (WM) tissue delineation. PET images were registered to MRI (MR space) and transformed to MNI space. All images were normalized to cerebellar uptake (SUVR). All possible combinations of the following settings were considered to extract feature values: (1)tracer: FDG or PIB; (2)space: MR or MNI space; (3)discretization: fixed bin number (BN) of 64, fixed bin sizes (BS) of 0.05 or 0.25; and (4)volume of interest (VOI): GM, WM, or BRAIN (GM+WM). Features that correlated (&gt;0.9) to traditional metrics (average VOI SUVR and volume) in any configuration were removed. Correlation of feature values between configurations, redundancy, and harmonization of feature values were tested. Image processing settings highly affect radiomic feature values and should be carefully taken into consideration during study design and should be properly reported.   The enclosed datasets refer to the work developed at the University Medical Center Groningen and consists of extracted feature values used in the publication.</abstract><pub>Zenodo</pub><doi>10.5281/zenodo.10125829</doi><orcidid>https://orcid.org/0000-0002-0313-5686</orcidid><orcidid>https://orcid.org/0000-0002-3033-8817</orcidid><orcidid>https://orcid.org/0000-0003-3308-3167</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext_linktorsrc
identifier DOI: 10.5281/zenodo.10125829
ispartof
issn
language eng
recordid cdi_datacite_primary_10_5281_zenodo_10125829
source DataCite
title Impact of Image Processing Settings for Radiomic Features in Alzheimer's Disease Using 18F-FDG and 11C-PIB PET Scans
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-08T22%3A09%3A17IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-datacite_PQ8&rft_val_fmt=info:ofi/fmt:kev:mtx:book&rft.genre=unknown&rft.au=Peretti,%20D%C3%A9bora%20Elisa&rft.date=2023-11-14&rft_id=info:doi/10.5281/zenodo.10125829&rft_dat=%3Cdatacite_PQ8%3E10_5281_zenodo_10125829%3C/datacite_PQ8%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true