Data from: A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae)
Background: Arthropods have received much attention as a model for studying opsin evolution in invertebrates. Yet, relatively few studies have investigated the diversity of opsin proteins that underlie spectral sensitivity of the visual pigments within the diverse beetles (Insecta: Coleoptera). Prev...
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creator | Lord, Nathan P. Plimpton, Rebecca L. Sharkey, Camilla R. Suvorov, Anton Lelito, Jonathan P. Willardson, Barry M. Bybee, Seth M. |
description | Background: Arthropods have received much attention as a model for
studying opsin evolution in invertebrates. Yet, relatively few studies
have investigated the diversity of opsin proteins that underlie spectral
sensitivity of the visual pigments within the diverse beetles (Insecta:
Coleoptera). Previous work has demonstrated that beetles appear to lack
the short-wavelength-sensitive (SWS) opsin class that typically confers
sensitivity to the “blue” region of the light spectrum. However, this is
contrary to established physiological data in a number of Coleoptera. To
explore potential adaptations at the molecular level that may compensate
for the loss of the SWS opsin, we carried out an exploration of the opsin
proteins within a group of beetles (Buprestidae) where short-wave
sensitivity has been demonstrated. RNA-seq data were generated to identify
opsin proteins from nine taxa comprising six buprestid species (including
three male/female pairs) across four subfamilies. Structural analyses of
recovered opsins were conducted and compared to opsin sequences in other
insects across the main opsin classes—ultraviolet, short-wavelength, and
long-wavelength. Results: All nine buprestids were found to express two
opsin copies in each of the ultraviolet and long-wavelength classes,
contrary to the single copies recovered in all other molecular studies of
adult beetle opsin expression. No SWS opsin class was recovered.
Furthermore, the male Agrilus planipennis (emerald ash borer—EAB)
expressed a third LWS opsin at low levels that is presumed to be a larval
copy. Subsequent homology and structural analyses identified multiple
amino acid substitutions in the UVS and LWS copies that could confer
short-wavelength sensitivity. Conclusions: This work is the first to
compare expressed opsin genes against known electrophysiological data that
demonstrate multiple peak sensitivities in Coleoptera. We report the first
instance of opsin duplication in adult beetles, which occurs in both the
UVS and LWS opsin classes. Through structural comparisons of known insect
opsins, we suggest that opsin duplication and amino acid variation within
the chromophore binding pocket explains sensitivity in the
short-wavelength portion of the visible light spectrum in these species.
These findings are the first to reveal molecular complexity of the color
vision system within beetles. |
doi_str_mv | 10.5061/dryad.f8584 |
format | Dataset |
fullrecord | <record><control><sourceid>datacite_PQ8</sourceid><recordid>TN_cdi_datacite_primary_10_5061_dryad_f8584</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_5061_dryad_f8584</sourcerecordid><originalsourceid>FETCH-datacite_primary_10_5061_dryad_f85843</originalsourceid><addsrcrecordid>eNqVj0FOAzEMRbNhgYAVF_AShFpmBEXV7KCAOAD7yDNxGKM0iRyn1XARrkuncAFWX1__f8vPmMu2Wa6ah_bWyYRu6der9f2p-X5GRfCSth08wlCFwCcBHQn6UKl0kHLhCK7mwAMqpwgYHZTa-xqH2WPgr99gXpYxiS72uKNA8UNHKBQLK-9YJzgc-qQ9BeiJNFCBq00KlLKSYAdPNQsVZYd0fW5OPIZCF396Zm5eX943bwt3-HdgJZuFtyiTbRs7Y9kjlj1i3f2v_QNVzF-j</addsrcrecordid><sourcetype>Publisher</sourcetype><iscdi>true</iscdi><recordtype>dataset</recordtype></control><display><type>dataset</type><title>Data from: A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae)</title><source>DataCite</source><creator>Lord, Nathan P. ; Plimpton, Rebecca L. ; Sharkey, Camilla R. ; Suvorov, Anton ; Lelito, Jonathan P. ; Willardson, Barry M. ; Bybee, Seth M.</creator><creatorcontrib>Lord, Nathan P. ; Plimpton, Rebecca L. ; Sharkey, Camilla R. ; Suvorov, Anton ; Lelito, Jonathan P. ; Willardson, Barry M. ; Bybee, Seth M.</creatorcontrib><description>Background: Arthropods have received much attention as a model for
studying opsin evolution in invertebrates. Yet, relatively few studies
have investigated the diversity of opsin proteins that underlie spectral
sensitivity of the visual pigments within the diverse beetles (Insecta:
Coleoptera). Previous work has demonstrated that beetles appear to lack
the short-wavelength-sensitive (SWS) opsin class that typically confers
sensitivity to the “blue” region of the light spectrum. However, this is
contrary to established physiological data in a number of Coleoptera. To
explore potential adaptations at the molecular level that may compensate
for the loss of the SWS opsin, we carried out an exploration of the opsin
proteins within a group of beetles (Buprestidae) where short-wave
sensitivity has been demonstrated. RNA-seq data were generated to identify
opsin proteins from nine taxa comprising six buprestid species (including
three male/female pairs) across four subfamilies. Structural analyses of
recovered opsins were conducted and compared to opsin sequences in other
insects across the main opsin classes—ultraviolet, short-wavelength, and
long-wavelength. Results: All nine buprestids were found to express two
opsin copies in each of the ultraviolet and long-wavelength classes,
contrary to the single copies recovered in all other molecular studies of
adult beetle opsin expression. No SWS opsin class was recovered.
Furthermore, the male Agrilus planipennis (emerald ash borer—EAB)
expressed a third LWS opsin at low levels that is presumed to be a larval
copy. Subsequent homology and structural analyses identified multiple
amino acid substitutions in the UVS and LWS copies that could confer
short-wavelength sensitivity. Conclusions: This work is the first to
compare expressed opsin genes against known electrophysiological data that
demonstrate multiple peak sensitivities in Coleoptera. We report the first
instance of opsin duplication in adult beetles, which occurs in both the
UVS and LWS opsin classes. Through structural comparisons of known insect
opsins, we suggest that opsin duplication and amino acid variation within
the chromophore binding pocket explains sensitivity in the
short-wavelength portion of the visible light spectrum in these species.
These findings are the first to reveal molecular complexity of the color
vision system within beetles.</description><identifier>DOI: 10.5061/dryad.f8584</identifier><language>eng</language><publisher>Dryad</publisher><subject>Acmaeodera diffusa ; Agrilus planipennis ; Buprestidae ; Chrysobothris lateralis ; Chrysochroa tonkinensis ; emerald ash borer ; insect vision ; opsins ; pest species ; Sphenoptera ; Steraspis amplipennis</subject><creationdate>2016</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>776,1888</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.5061/dryad.f8584$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Lord, Nathan P.</creatorcontrib><creatorcontrib>Plimpton, Rebecca L.</creatorcontrib><creatorcontrib>Sharkey, Camilla R.</creatorcontrib><creatorcontrib>Suvorov, Anton</creatorcontrib><creatorcontrib>Lelito, Jonathan P.</creatorcontrib><creatorcontrib>Willardson, Barry M.</creatorcontrib><creatorcontrib>Bybee, Seth M.</creatorcontrib><title>Data from: A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae)</title><description>Background: Arthropods have received much attention as a model for
studying opsin evolution in invertebrates. Yet, relatively few studies
have investigated the diversity of opsin proteins that underlie spectral
sensitivity of the visual pigments within the diverse beetles (Insecta:
Coleoptera). Previous work has demonstrated that beetles appear to lack
the short-wavelength-sensitive (SWS) opsin class that typically confers
sensitivity to the “blue” region of the light spectrum. However, this is
contrary to established physiological data in a number of Coleoptera. To
explore potential adaptations at the molecular level that may compensate
for the loss of the SWS opsin, we carried out an exploration of the opsin
proteins within a group of beetles (Buprestidae) where short-wave
sensitivity has been demonstrated. RNA-seq data were generated to identify
opsin proteins from nine taxa comprising six buprestid species (including
three male/female pairs) across four subfamilies. Structural analyses of
recovered opsins were conducted and compared to opsin sequences in other
insects across the main opsin classes—ultraviolet, short-wavelength, and
long-wavelength. Results: All nine buprestids were found to express two
opsin copies in each of the ultraviolet and long-wavelength classes,
contrary to the single copies recovered in all other molecular studies of
adult beetle opsin expression. No SWS opsin class was recovered.
Furthermore, the male Agrilus planipennis (emerald ash borer—EAB)
expressed a third LWS opsin at low levels that is presumed to be a larval
copy. Subsequent homology and structural analyses identified multiple
amino acid substitutions in the UVS and LWS copies that could confer
short-wavelength sensitivity. Conclusions: This work is the first to
compare expressed opsin genes against known electrophysiological data that
demonstrate multiple peak sensitivities in Coleoptera. We report the first
instance of opsin duplication in adult beetles, which occurs in both the
UVS and LWS opsin classes. Through structural comparisons of known insect
opsins, we suggest that opsin duplication and amino acid variation within
the chromophore binding pocket explains sensitivity in the
short-wavelength portion of the visible light spectrum in these species.
These findings are the first to reveal molecular complexity of the color
vision system within beetles.</description><subject>Acmaeodera diffusa</subject><subject>Agrilus planipennis</subject><subject>Buprestidae</subject><subject>Chrysobothris lateralis</subject><subject>Chrysochroa tonkinensis</subject><subject>emerald ash borer</subject><subject>insect vision</subject><subject>opsins</subject><subject>pest species</subject><subject>Sphenoptera</subject><subject>Steraspis amplipennis</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2016</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNqVj0FOAzEMRbNhgYAVF_AShFpmBEXV7KCAOAD7yDNxGKM0iRyn1XARrkuncAFWX1__f8vPmMu2Wa6ah_bWyYRu6der9f2p-X5GRfCSth08wlCFwCcBHQn6UKl0kHLhCK7mwAMqpwgYHZTa-xqH2WPgr99gXpYxiS72uKNA8UNHKBQLK-9YJzgc-qQ9BeiJNFCBq00KlLKSYAdPNQsVZYd0fW5OPIZCF396Zm5eX943bwt3-HdgJZuFtyiTbRs7Y9kjlj1i3f2v_QNVzF-j</recordid><startdate>20160504</startdate><enddate>20160504</enddate><creator>Lord, Nathan P.</creator><creator>Plimpton, Rebecca L.</creator><creator>Sharkey, Camilla R.</creator><creator>Suvorov, Anton</creator><creator>Lelito, Jonathan P.</creator><creator>Willardson, Barry M.</creator><creator>Bybee, Seth M.</creator><general>Dryad</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20160504</creationdate><title>Data from: A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae)</title><author>Lord, Nathan P. ; Plimpton, Rebecca L. ; Sharkey, Camilla R. ; Suvorov, Anton ; Lelito, Jonathan P. ; Willardson, Barry M. ; Bybee, Seth M.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_5061_dryad_f85843</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2016</creationdate><topic>Acmaeodera diffusa</topic><topic>Agrilus planipennis</topic><topic>Buprestidae</topic><topic>Chrysobothris lateralis</topic><topic>Chrysochroa tonkinensis</topic><topic>emerald ash borer</topic><topic>insect vision</topic><topic>opsins</topic><topic>pest species</topic><topic>Sphenoptera</topic><topic>Steraspis amplipennis</topic><toplevel>online_resources</toplevel><creatorcontrib>Lord, Nathan P.</creatorcontrib><creatorcontrib>Plimpton, Rebecca L.</creatorcontrib><creatorcontrib>Sharkey, Camilla R.</creatorcontrib><creatorcontrib>Suvorov, Anton</creatorcontrib><creatorcontrib>Lelito, Jonathan P.</creatorcontrib><creatorcontrib>Willardson, Barry M.</creatorcontrib><creatorcontrib>Bybee, Seth M.</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Lord, Nathan P.</au><au>Plimpton, Rebecca L.</au><au>Sharkey, Camilla R.</au><au>Suvorov, Anton</au><au>Lelito, Jonathan P.</au><au>Willardson, Barry M.</au><au>Bybee, Seth M.</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Data from: A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae)</title><date>2016-05-04</date><risdate>2016</risdate><abstract>Background: Arthropods have received much attention as a model for
studying opsin evolution in invertebrates. Yet, relatively few studies
have investigated the diversity of opsin proteins that underlie spectral
sensitivity of the visual pigments within the diverse beetles (Insecta:
Coleoptera). Previous work has demonstrated that beetles appear to lack
the short-wavelength-sensitive (SWS) opsin class that typically confers
sensitivity to the “blue” region of the light spectrum. However, this is
contrary to established physiological data in a number of Coleoptera. To
explore potential adaptations at the molecular level that may compensate
for the loss of the SWS opsin, we carried out an exploration of the opsin
proteins within a group of beetles (Buprestidae) where short-wave
sensitivity has been demonstrated. RNA-seq data were generated to identify
opsin proteins from nine taxa comprising six buprestid species (including
three male/female pairs) across four subfamilies. Structural analyses of
recovered opsins were conducted and compared to opsin sequences in other
insects across the main opsin classes—ultraviolet, short-wavelength, and
long-wavelength. Results: All nine buprestids were found to express two
opsin copies in each of the ultraviolet and long-wavelength classes,
contrary to the single copies recovered in all other molecular studies of
adult beetle opsin expression. No SWS opsin class was recovered.
Furthermore, the male Agrilus planipennis (emerald ash borer—EAB)
expressed a third LWS opsin at low levels that is presumed to be a larval
copy. Subsequent homology and structural analyses identified multiple
amino acid substitutions in the UVS and LWS copies that could confer
short-wavelength sensitivity. Conclusions: This work is the first to
compare expressed opsin genes against known electrophysiological data that
demonstrate multiple peak sensitivities in Coleoptera. We report the first
instance of opsin duplication in adult beetles, which occurs in both the
UVS and LWS opsin classes. Through structural comparisons of known insect
opsins, we suggest that opsin duplication and amino acid variation within
the chromophore binding pocket explains sensitivity in the
short-wavelength portion of the visible light spectrum in these species.
These findings are the first to reveal molecular complexity of the color
vision system within beetles.</abstract><pub>Dryad</pub><doi>10.5061/dryad.f8584</doi><oa>free_for_read</oa></addata></record> |
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identifier | DOI: 10.5061/dryad.f8584 |
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subjects | Acmaeodera diffusa Agrilus planipennis Buprestidae Chrysobothris lateralis Chrysochroa tonkinensis emerald ash borer insect vision opsins pest species Sphenoptera Steraspis amplipennis |
title | Data from: A cure for the blues: opsin duplication and subfunctionalization for short-wavelength sensitivity in jewel beetles (Coleoptera: Buprestidae) |
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