Data from: LiDAR and RGB-image analysis to predict hairy vetch biomass in breeding nurseries
Hairy vetch is a fall seeded annual legume that can be used as a forage and cover crop. As a cover crop, it can provide numerous ecosystem services, such as soil erosion reduction, carbon sequestration, and pollinator habitat, but also agronomic services such as weed suppression and N fixation via s...
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creator | Wiering, Nicholas Ehlke, Nancy Jo Sheaffer, Craig |
description | Hairy vetch is a fall seeded annual legume that can be used as a forage
and cover crop. As a cover crop, it can provide numerous ecosystem
services, such as soil erosion reduction, carbon sequestration, and
pollinator habitat, but also agronomic services such as weed suppression
and N fixation via soil rhizobium species. To improve cover crop function,
traits such as biomass production are especially relevant, making it a
first priority trait for cover crop breeders. However, direct phenotypic
methods for biomass production are destructive. Breeders have thus relied
on subjective, visual scoring methods for biomass, which are generally
correlative, but are not quantitative or absolute. In this study, we
evaluated two low-cost remote sensing tools, LiDAR and RGB-image analysis,
for their effectiveness at predicting biomass in vivo. We evaluated these
tools in two common forage breeding scenarios, spaced-plant and sward-plot
nurseries, at three Minnesota locations following the winter of 2016/2017.
Ground cover, determined from RGB image binarization using the Canopeo
application, had a significant and linear relationship with above-ground
biomass in spaced-plants (R2=0.93), and sward-plots (R2=0.89). Once the
image area became saturated with vegetative pixels, a near-exponential
relationship with biomass would occur. Because of the low-growth habit of
hairy vetch, RGB image analysis was more appropriate at lower plant
densities, such as spaced-plant nurseries. LiDAR measures of sward-plot
height were also linearly and strongly related to dry-matter biomass in
sward-plots (R2=0.80). The dimensionality of LiDAR sensing gave it greater
predictive ability at higher plant densities, where RGB analysis could not
detect vertical increases in biomass production. Lastly, we combined RGB
and LiDAR data to predict sward-plot biomass in a multiple mixed-effect
regression model. By doing so, we were able to explain more biomass
variation than with use of either phenotypic tool as a single predictor
(R2=0.94). |
doi_str_mv | 10.5061/dryad.99sq846 |
format | Dataset |
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and cover crop. As a cover crop, it can provide numerous ecosystem
services, such as soil erosion reduction, carbon sequestration, and
pollinator habitat, but also agronomic services such as weed suppression
and N fixation via soil rhizobium species. To improve cover crop function,
traits such as biomass production are especially relevant, making it a
first priority trait for cover crop breeders. However, direct phenotypic
methods for biomass production are destructive. Breeders have thus relied
on subjective, visual scoring methods for biomass, which are generally
correlative, but are not quantitative or absolute. In this study, we
evaluated two low-cost remote sensing tools, LiDAR and RGB-image analysis,
for their effectiveness at predicting biomass in vivo. We evaluated these
tools in two common forage breeding scenarios, spaced-plant and sward-plot
nurseries, at three Minnesota locations following the winter of 2016/2017.
Ground cover, determined from RGB image binarization using the Canopeo
application, had a significant and linear relationship with above-ground
biomass in spaced-plants (R2=0.93), and sward-plots (R2=0.89). Once the
image area became saturated with vegetative pixels, a near-exponential
relationship with biomass would occur. Because of the low-growth habit of
hairy vetch, RGB image analysis was more appropriate at lower plant
densities, such as spaced-plant nurseries. LiDAR measures of sward-plot
height were also linearly and strongly related to dry-matter biomass in
sward-plots (R2=0.80). The dimensionality of LiDAR sensing gave it greater
predictive ability at higher plant densities, where RGB analysis could not
detect vertical increases in biomass production. Lastly, we combined RGB
and LiDAR data to predict sward-plot biomass in a multiple mixed-effect
regression model. By doing so, we were able to explain more biomass
variation than with use of either phenotypic tool as a single predictor
(R2=0.94).</description><identifier>DOI: 10.5061/dryad.99sq846</identifier><language>eng</language><publisher>Dryad</publisher><subject>hairy vetch ; RGB ; Vicia villosa</subject><creationdate>2019</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>777,1889</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.5061/dryad.99sq846$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Wiering, Nicholas</creatorcontrib><creatorcontrib>Ehlke, Nancy Jo</creatorcontrib><creatorcontrib>Sheaffer, Craig</creatorcontrib><title>Data from: LiDAR and RGB-image analysis to predict hairy vetch biomass in breeding nurseries</title><description>Hairy vetch is a fall seeded annual legume that can be used as a forage
and cover crop. As a cover crop, it can provide numerous ecosystem
services, such as soil erosion reduction, carbon sequestration, and
pollinator habitat, but also agronomic services such as weed suppression
and N fixation via soil rhizobium species. To improve cover crop function,
traits such as biomass production are especially relevant, making it a
first priority trait for cover crop breeders. However, direct phenotypic
methods for biomass production are destructive. Breeders have thus relied
on subjective, visual scoring methods for biomass, which are generally
correlative, but are not quantitative or absolute. In this study, we
evaluated two low-cost remote sensing tools, LiDAR and RGB-image analysis,
for their effectiveness at predicting biomass in vivo. We evaluated these
tools in two common forage breeding scenarios, spaced-plant and sward-plot
nurseries, at three Minnesota locations following the winter of 2016/2017.
Ground cover, determined from RGB image binarization using the Canopeo
application, had a significant and linear relationship with above-ground
biomass in spaced-plants (R2=0.93), and sward-plots (R2=0.89). Once the
image area became saturated with vegetative pixels, a near-exponential
relationship with biomass would occur. Because of the low-growth habit of
hairy vetch, RGB image analysis was more appropriate at lower plant
densities, such as spaced-plant nurseries. LiDAR measures of sward-plot
height were also linearly and strongly related to dry-matter biomass in
sward-plots (R2=0.80). The dimensionality of LiDAR sensing gave it greater
predictive ability at higher plant densities, where RGB analysis could not
detect vertical increases in biomass production. Lastly, we combined RGB
and LiDAR data to predict sward-plot biomass in a multiple mixed-effect
regression model. By doing so, we were able to explain more biomass
variation than with use of either phenotypic tool as a single predictor
(R2=0.94).</description><subject>hairy vetch</subject><subject>RGB</subject><subject>Vicia villosa</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2019</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNqVjrsKwkAQRbexELW0nx9ITFCDsVPjo7ASS2GZZDfJQF7OrsL-vVHyA1aXy71wjhDzMPDXQRQuFDtUfhyb52YVjcUjQYuQc1tv4UrJ7gbYKLid9x7VWOi-YeUMGbAtdKwVZRZKJHbw1jYrIaW2RmOAGkhZ93tTQPNio5m0mYpRjpXRsyEnwjsd74eLp3poRlbLjnsMOxkG8msnf3ZysFv--_8AA_lKSg</recordid><startdate>20190913</startdate><enddate>20190913</enddate><creator>Wiering, Nicholas</creator><creator>Ehlke, Nancy Jo</creator><creator>Sheaffer, Craig</creator><general>Dryad</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20190913</creationdate><title>Data from: LiDAR and RGB-image analysis to predict hairy vetch biomass in breeding nurseries</title><author>Wiering, Nicholas ; Ehlke, Nancy Jo ; Sheaffer, Craig</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_5061_dryad_99sq8463</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2019</creationdate><topic>hairy vetch</topic><topic>RGB</topic><topic>Vicia villosa</topic><toplevel>online_resources</toplevel><creatorcontrib>Wiering, Nicholas</creatorcontrib><creatorcontrib>Ehlke, Nancy Jo</creatorcontrib><creatorcontrib>Sheaffer, Craig</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Wiering, Nicholas</au><au>Ehlke, Nancy Jo</au><au>Sheaffer, Craig</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Data from: LiDAR and RGB-image analysis to predict hairy vetch biomass in breeding nurseries</title><date>2019-09-13</date><risdate>2019</risdate><abstract>Hairy vetch is a fall seeded annual legume that can be used as a forage
and cover crop. As a cover crop, it can provide numerous ecosystem
services, such as soil erosion reduction, carbon sequestration, and
pollinator habitat, but also agronomic services such as weed suppression
and N fixation via soil rhizobium species. To improve cover crop function,
traits such as biomass production are especially relevant, making it a
first priority trait for cover crop breeders. However, direct phenotypic
methods for biomass production are destructive. Breeders have thus relied
on subjective, visual scoring methods for biomass, which are generally
correlative, but are not quantitative or absolute. In this study, we
evaluated two low-cost remote sensing tools, LiDAR and RGB-image analysis,
for their effectiveness at predicting biomass in vivo. We evaluated these
tools in two common forage breeding scenarios, spaced-plant and sward-plot
nurseries, at three Minnesota locations following the winter of 2016/2017.
Ground cover, determined from RGB image binarization using the Canopeo
application, had a significant and linear relationship with above-ground
biomass in spaced-plants (R2=0.93), and sward-plots (R2=0.89). Once the
image area became saturated with vegetative pixels, a near-exponential
relationship with biomass would occur. Because of the low-growth habit of
hairy vetch, RGB image analysis was more appropriate at lower plant
densities, such as spaced-plant nurseries. LiDAR measures of sward-plot
height were also linearly and strongly related to dry-matter biomass in
sward-plots (R2=0.80). The dimensionality of LiDAR sensing gave it greater
predictive ability at higher plant densities, where RGB analysis could not
detect vertical increases in biomass production. Lastly, we combined RGB
and LiDAR data to predict sward-plot biomass in a multiple mixed-effect
regression model. By doing so, we were able to explain more biomass
variation than with use of either phenotypic tool as a single predictor
(R2=0.94).</abstract><pub>Dryad</pub><doi>10.5061/dryad.99sq846</doi><oa>free_for_read</oa></addata></record> |
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identifier | DOI: 10.5061/dryad.99sq846 |
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language | eng |
recordid | cdi_datacite_primary_10_5061_dryad_99sq846 |
source | DataCite |
subjects | hairy vetch RGB Vicia villosa |
title | Data from: LiDAR and RGB-image analysis to predict hairy vetch biomass in breeding nurseries |
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