Data from: Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism

Parasitic plants in the genus Striga, commonly known as witchweeds, cause major crop losses in sub-Saharan Africa and pose a threat to agriculture worldwide. An understanding of Striga parasite biology, which could lead to agricultural solutions, has been hampered by the lack of genome information....

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Hauptverfasser: Yoshida, Satoko, Kim, Seungill, Wafula, Eric K., Tanskanen, Jaakko, Kim, Yong-Min, Honaas, Loren, Yang, Zhenzhen, Spallek, Thomas, Conn, Caitlin E., Ichihashi, Yasunori, Cheong, Kyeongchae, Cui, Songkui, Der, Joshua P., Gundlach, Heidrun, Jiao, Yuannian, Hori, Chiaki, Ishida, Juliane K., Kasahara, Hiroyuki, Kiba, Takatoshi, Kim, Myung-Shin, Koo, Namjin, Laohavisit, Anuphon, Lee, Yong-Hwan, Lumba, Shelley, McCourt, Peter, Mortimer, Jenny C., Mutuku, J. Musembi, Nomura, Takahito, Sasaki-Sekimoto, Yuko, Seto, Yoshiya, Wang, Yu, Wakatake, Takanori, Sakakibara, Hitoshi, Demura, Taku, Yamaguchi, Shinjiro, Yoneyama, Koichi, Manabe, Ri-Ichiroh, Nelson, David C., Schulman, Alan H., Timko, Michael P., DePamphilis, Claude W., Choi, Doil, Shirasu, Ken
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creator Yoshida, Satoko
Kim, Seungill
Wafula, Eric K.
Tanskanen, Jaakko
Kim, Yong-Min
Honaas, Loren
Yang, Zhenzhen
Spallek, Thomas
Conn, Caitlin E.
Ichihashi, Yasunori
Cheong, Kyeongchae
Cui, Songkui
Der, Joshua P.
Gundlach, Heidrun
Jiao, Yuannian
Hori, Chiaki
Ishida, Juliane K.
Kasahara, Hiroyuki
Kiba, Takatoshi
Kim, Myung-Shin
Koo, Namjin
Laohavisit, Anuphon
Lee, Yong-Hwan
Lumba, Shelley
McCourt, Peter
Mortimer, Jenny C.
Mutuku, J. Musembi
Nomura, Takahito
Sasaki-Sekimoto, Yuko
Seto, Yoshiya
Wang, Yu
Wakatake, Takanori
Sakakibara, Hitoshi
Demura, Taku
Yamaguchi, Shinjiro
Yoneyama, Koichi
Manabe, Ri-Ichiroh
Nelson, David C.
Schulman, Alan H.
Timko, Michael P.
DePamphilis, Claude W.
Choi, Doil
Shirasu, Ken
description Parasitic plants in the genus Striga, commonly known as witchweeds, cause major crop losses in sub-Saharan Africa and pose a threat to agriculture worldwide. An understanding of Striga parasite biology, which could lead to agricultural solutions, has been hampered by the lack of genome information. Here we report the draft genome sequence of Striga asiatica with 34,577 predicted protein-coding genes, which reflects gene family contractions and expansions that are consistent with a three-phase model of parasitic plant genome evolution. Striga seeds germinate in response to host-derived strigolactones (SLs) and then develop a specialised penetration structure, the haustorium, to invade the host root. A family of SL receptors has undergone a striking expansion, suggesting a molecular basis for the evolution of broad host range among Striga spp. We found that genes involved in lateral root development in non-parasitic model species are coordinately induced during haustorium development in Striga, suggesting a pathway that was partly co-opted during the evolution of the haustorium. In addition, we found evidence for horizontal transfer of host genes as well as retrotransposons, indicating gene flow to S. asiatica from hosts. Our results provide valuable insights into the evolution of parasitism and a key resource for the future development of Striga control strategies.
doi_str_mv 10.5061/dryad.53t3574
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Musembi ; Nomura, Takahito ; Sasaki-Sekimoto, Yuko ; Seto, Yoshiya ; Wang, Yu ; Wakatake, Takanori ; Sakakibara, Hitoshi ; Demura, Taku ; Yamaguchi, Shinjiro ; Yoneyama, Koichi ; Manabe, Ri-Ichiroh ; Nelson, David C. ; Schulman, Alan H. ; Timko, Michael P. ; DePamphilis, Claude W. ; Choi, Doil ; Shirasu, Ken</creator><creatorcontrib>Yoshida, Satoko ; Kim, Seungill ; Wafula, Eric K. ; Tanskanen, Jaakko ; Kim, Yong-Min ; Honaas, Loren ; Yang, Zhenzhen ; Spallek, Thomas ; Conn, Caitlin E. ; Ichihashi, Yasunori ; Cheong, Kyeongchae ; Cui, Songkui ; Der, Joshua P. ; Gundlach, Heidrun ; Jiao, Yuannian ; Hori, Chiaki ; Ishida, Juliane K. ; Kasahara, Hiroyuki ; Kiba, Takatoshi ; Kim, Myung-Shin ; Koo, Namjin ; Laohavisit, Anuphon ; Lee, Yong-Hwan ; Lumba, Shelley ; McCourt, Peter ; Mortimer, Jenny C. ; Mutuku, J. 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Striga seeds germinate in response to host-derived strigolactones (SLs) and then develop a specialised penetration structure, the haustorium, to invade the host root. A family of SL receptors has undergone a striking expansion, suggesting a molecular basis for the evolution of broad host range among Striga spp. We found that genes involved in lateral root development in non-parasitic model species are coordinately induced during haustorium development in Striga, suggesting a pathway that was partly co-opted during the evolution of the haustorium. In addition, we found evidence for horizontal transfer of host genes as well as retrotransposons, indicating gene flow to S. asiatica from hosts. 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Musembi</au><au>Nomura, Takahito</au><au>Sasaki-Sekimoto, Yuko</au><au>Seto, Yoshiya</au><au>Wang, Yu</au><au>Wakatake, Takanori</au><au>Sakakibara, Hitoshi</au><au>Demura, Taku</au><au>Yamaguchi, Shinjiro</au><au>Yoneyama, Koichi</au><au>Manabe, Ri-Ichiroh</au><au>Nelson, David C.</au><au>Schulman, Alan H.</au><au>Timko, Michael P.</au><au>DePamphilis, Claude W.</au><au>Choi, Doil</au><au>Shirasu, Ken</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Data from: Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism</title><date>2019-09-12</date><risdate>2019</risdate><abstract>Parasitic plants in the genus Striga, commonly known as witchweeds, cause major crop losses in sub-Saharan Africa and pose a threat to agriculture worldwide. An understanding of Striga parasite biology, which could lead to agricultural solutions, has been hampered by the lack of genome information. Here we report the draft genome sequence of Striga asiatica with 34,577 predicted protein-coding genes, which reflects gene family contractions and expansions that are consistent with a three-phase model of parasitic plant genome evolution. Striga seeds germinate in response to host-derived strigolactones (SLs) and then develop a specialised penetration structure, the haustorium, to invade the host root. A family of SL receptors has undergone a striking expansion, suggesting a molecular basis for the evolution of broad host range among Striga spp. We found that genes involved in lateral root development in non-parasitic model species are coordinately induced during haustorium development in Striga, suggesting a pathway that was partly co-opted during the evolution of the haustorium. In addition, we found evidence for horizontal transfer of host genes as well as retrotransposons, indicating gene flow to S. asiatica from hosts. Our results provide valuable insights into the evolution of parasitism and a key resource for the future development of Striga control strategies.</abstract><pub>Dryad</pub><doi>10.5061/dryad.53t3574</doi><oa>free_for_read</oa></addata></record>
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identifier DOI: 10.5061/dryad.53t3574
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subjects Striga asiatica
Striga hermonthica
title Data from: Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism
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