Data from: Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism
Parasitic plants in the genus Striga, commonly known as witchweeds, cause major crop losses in sub-Saharan Africa and pose a threat to agriculture worldwide. An understanding of Striga parasite biology, which could lead to agricultural solutions, has been hampered by the lack of genome information....
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creator | Yoshida, Satoko Kim, Seungill Wafula, Eric K. Tanskanen, Jaakko Kim, Yong-Min Honaas, Loren Yang, Zhenzhen Spallek, Thomas Conn, Caitlin E. Ichihashi, Yasunori Cheong, Kyeongchae Cui, Songkui Der, Joshua P. Gundlach, Heidrun Jiao, Yuannian Hori, Chiaki Ishida, Juliane K. Kasahara, Hiroyuki Kiba, Takatoshi Kim, Myung-Shin Koo, Namjin Laohavisit, Anuphon Lee, Yong-Hwan Lumba, Shelley McCourt, Peter Mortimer, Jenny C. Mutuku, J. Musembi Nomura, Takahito Sasaki-Sekimoto, Yuko Seto, Yoshiya Wang, Yu Wakatake, Takanori Sakakibara, Hitoshi Demura, Taku Yamaguchi, Shinjiro Yoneyama, Koichi Manabe, Ri-Ichiroh Nelson, David C. Schulman, Alan H. Timko, Michael P. DePamphilis, Claude W. Choi, Doil Shirasu, Ken |
description | Parasitic plants in the genus Striga, commonly known as witchweeds, cause
major crop losses in sub-Saharan Africa and pose a threat to agriculture
worldwide. An understanding of Striga parasite biology, which could lead
to agricultural solutions, has been hampered by the lack of genome
information. Here we report the draft genome sequence of Striga asiatica
with 34,577 predicted protein-coding genes, which reflects gene family
contractions and expansions that are consistent with a three-phase model
of parasitic plant genome evolution. Striga seeds germinate in response to
host-derived strigolactones (SLs) and then develop a specialised
penetration structure, the haustorium, to invade the host root. A family
of SL receptors has undergone a striking expansion, suggesting a molecular
basis for the evolution of broad host range among Striga spp. We found
that genes involved in lateral root development in non-parasitic model
species are coordinately induced during haustorium development in Striga,
suggesting a pathway that was partly co-opted during the evolution of the
haustorium. In addition, we found evidence for horizontal transfer of host
genes as well as retrotransposons, indicating gene flow to S. asiatica
from hosts. Our results provide valuable insights into the evolution of
parasitism and a key resource for the future development of Striga control
strategies. |
doi_str_mv | 10.5061/dryad.53t3574 |
format | Dataset |
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major crop losses in sub-Saharan Africa and pose a threat to agriculture
worldwide. An understanding of Striga parasite biology, which could lead
to agricultural solutions, has been hampered by the lack of genome
information. Here we report the draft genome sequence of Striga asiatica
with 34,577 predicted protein-coding genes, which reflects gene family
contractions and expansions that are consistent with a three-phase model
of parasitic plant genome evolution. Striga seeds germinate in response to
host-derived strigolactones (SLs) and then develop a specialised
penetration structure, the haustorium, to invade the host root. A family
of SL receptors has undergone a striking expansion, suggesting a molecular
basis for the evolution of broad host range among Striga spp. We found
that genes involved in lateral root development in non-parasitic model
species are coordinately induced during haustorium development in Striga,
suggesting a pathway that was partly co-opted during the evolution of the
haustorium. In addition, we found evidence for horizontal transfer of host
genes as well as retrotransposons, indicating gene flow to S. asiatica
from hosts. Our results provide valuable insights into the evolution of
parasitism and a key resource for the future development of Striga control
strategies.</description><identifier>DOI: 10.5061/dryad.53t3574</identifier><language>eng</language><publisher>Dryad</publisher><subject>Striga asiatica ; Striga hermonthica</subject><creationdate>2019</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>778,1890</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.5061/dryad.53t3574$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Yoshida, Satoko</creatorcontrib><creatorcontrib>Kim, Seungill</creatorcontrib><creatorcontrib>Wafula, Eric K.</creatorcontrib><creatorcontrib>Tanskanen, Jaakko</creatorcontrib><creatorcontrib>Kim, Yong-Min</creatorcontrib><creatorcontrib>Honaas, Loren</creatorcontrib><creatorcontrib>Yang, Zhenzhen</creatorcontrib><creatorcontrib>Spallek, Thomas</creatorcontrib><creatorcontrib>Conn, Caitlin E.</creatorcontrib><creatorcontrib>Ichihashi, Yasunori</creatorcontrib><creatorcontrib>Cheong, Kyeongchae</creatorcontrib><creatorcontrib>Cui, Songkui</creatorcontrib><creatorcontrib>Der, Joshua P.</creatorcontrib><creatorcontrib>Gundlach, Heidrun</creatorcontrib><creatorcontrib>Jiao, Yuannian</creatorcontrib><creatorcontrib>Hori, Chiaki</creatorcontrib><creatorcontrib>Ishida, Juliane K.</creatorcontrib><creatorcontrib>Kasahara, Hiroyuki</creatorcontrib><creatorcontrib>Kiba, Takatoshi</creatorcontrib><creatorcontrib>Kim, Myung-Shin</creatorcontrib><creatorcontrib>Koo, Namjin</creatorcontrib><creatorcontrib>Laohavisit, Anuphon</creatorcontrib><creatorcontrib>Lee, Yong-Hwan</creatorcontrib><creatorcontrib>Lumba, Shelley</creatorcontrib><creatorcontrib>McCourt, Peter</creatorcontrib><creatorcontrib>Mortimer, Jenny C.</creatorcontrib><creatorcontrib>Mutuku, J. Musembi</creatorcontrib><creatorcontrib>Nomura, Takahito</creatorcontrib><creatorcontrib>Sasaki-Sekimoto, Yuko</creatorcontrib><creatorcontrib>Seto, Yoshiya</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Wakatake, Takanori</creatorcontrib><creatorcontrib>Sakakibara, Hitoshi</creatorcontrib><creatorcontrib>Demura, Taku</creatorcontrib><creatorcontrib>Yamaguchi, Shinjiro</creatorcontrib><creatorcontrib>Yoneyama, Koichi</creatorcontrib><creatorcontrib>Manabe, Ri-Ichiroh</creatorcontrib><creatorcontrib>Nelson, David C.</creatorcontrib><creatorcontrib>Schulman, Alan H.</creatorcontrib><creatorcontrib>Timko, Michael P.</creatorcontrib><creatorcontrib>DePamphilis, Claude W.</creatorcontrib><creatorcontrib>Choi, Doil</creatorcontrib><creatorcontrib>Shirasu, Ken</creatorcontrib><title>Data from: Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism</title><description>Parasitic plants in the genus Striga, commonly known as witchweeds, cause
major crop losses in sub-Saharan Africa and pose a threat to agriculture
worldwide. An understanding of Striga parasite biology, which could lead
to agricultural solutions, has been hampered by the lack of genome
information. Here we report the draft genome sequence of Striga asiatica
with 34,577 predicted protein-coding genes, which reflects gene family
contractions and expansions that are consistent with a three-phase model
of parasitic plant genome evolution. Striga seeds germinate in response to
host-derived strigolactones (SLs) and then develop a specialised
penetration structure, the haustorium, to invade the host root. A family
of SL receptors has undergone a striking expansion, suggesting a molecular
basis for the evolution of broad host range among Striga spp. We found
that genes involved in lateral root development in non-parasitic model
species are coordinately induced during haustorium development in Striga,
suggesting a pathway that was partly co-opted during the evolution of the
haustorium. In addition, we found evidence for horizontal transfer of host
genes as well as retrotransposons, indicating gene flow to S. asiatica
from hosts. Our results provide valuable insights into the evolution of
parasitism and a key resource for the future development of Striga control
strategies.</description><subject>Striga asiatica</subject><subject>Striga hermonthica</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2019</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNqVjrsOgkAQRbexMGppPz8AQhBNbH322m8mMMAk7C7uDiT8vWD8AavT3JN7lNqmSZwnh3RX-hHLOM8ky4_7paILCkLlnTnBnawzBIHePdmCwFXwFM81AgZG4QKh827gkgKwDVw3MlEcSENAg2t7YWdnrWvRCnToJ1E4mLVaVNgG2vy4UtHt-jo_onJ6L1hId54N-lGniZ4z9TdT_zKzf_cfmmdOJQ</recordid><startdate>20190912</startdate><enddate>20190912</enddate><creator>Yoshida, Satoko</creator><creator>Kim, Seungill</creator><creator>Wafula, Eric K.</creator><creator>Tanskanen, Jaakko</creator><creator>Kim, Yong-Min</creator><creator>Honaas, Loren</creator><creator>Yang, Zhenzhen</creator><creator>Spallek, Thomas</creator><creator>Conn, Caitlin E.</creator><creator>Ichihashi, Yasunori</creator><creator>Cheong, Kyeongchae</creator><creator>Cui, Songkui</creator><creator>Der, Joshua P.</creator><creator>Gundlach, Heidrun</creator><creator>Jiao, Yuannian</creator><creator>Hori, Chiaki</creator><creator>Ishida, Juliane K.</creator><creator>Kasahara, Hiroyuki</creator><creator>Kiba, Takatoshi</creator><creator>Kim, Myung-Shin</creator><creator>Koo, Namjin</creator><creator>Laohavisit, Anuphon</creator><creator>Lee, Yong-Hwan</creator><creator>Lumba, Shelley</creator><creator>McCourt, Peter</creator><creator>Mortimer, Jenny C.</creator><creator>Mutuku, J. Musembi</creator><creator>Nomura, Takahito</creator><creator>Sasaki-Sekimoto, Yuko</creator><creator>Seto, Yoshiya</creator><creator>Wang, Yu</creator><creator>Wakatake, Takanori</creator><creator>Sakakibara, Hitoshi</creator><creator>Demura, Taku</creator><creator>Yamaguchi, Shinjiro</creator><creator>Yoneyama, Koichi</creator><creator>Manabe, Ri-Ichiroh</creator><creator>Nelson, David C.</creator><creator>Schulman, Alan H.</creator><creator>Timko, Michael P.</creator><creator>DePamphilis, Claude W.</creator><creator>Choi, Doil</creator><creator>Shirasu, Ken</creator><general>Dryad</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20190912</creationdate><title>Data from: Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism</title><author>Yoshida, Satoko ; Kim, Seungill ; Wafula, Eric K. ; Tanskanen, Jaakko ; Kim, Yong-Min ; Honaas, Loren ; Yang, Zhenzhen ; Spallek, Thomas ; Conn, Caitlin E. ; Ichihashi, Yasunori ; Cheong, Kyeongchae ; Cui, Songkui ; Der, Joshua P. ; Gundlach, Heidrun ; Jiao, Yuannian ; Hori, Chiaki ; Ishida, Juliane K. ; Kasahara, Hiroyuki ; Kiba, Takatoshi ; Kim, Myung-Shin ; Koo, Namjin ; Laohavisit, Anuphon ; Lee, Yong-Hwan ; Lumba, Shelley ; McCourt, Peter ; Mortimer, Jenny C. ; Mutuku, J. Musembi ; Nomura, Takahito ; Sasaki-Sekimoto, Yuko ; Seto, Yoshiya ; Wang, Yu ; Wakatake, Takanori ; Sakakibara, Hitoshi ; Demura, Taku ; Yamaguchi, Shinjiro ; Yoneyama, Koichi ; Manabe, Ri-Ichiroh ; Nelson, David C. ; Schulman, Alan H. ; Timko, Michael P. ; DePamphilis, Claude W. ; Choi, Doil ; Shirasu, Ken</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_5061_dryad_53t35743</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Striga asiatica</topic><topic>Striga hermonthica</topic><toplevel>online_resources</toplevel><creatorcontrib>Yoshida, Satoko</creatorcontrib><creatorcontrib>Kim, Seungill</creatorcontrib><creatorcontrib>Wafula, Eric K.</creatorcontrib><creatorcontrib>Tanskanen, Jaakko</creatorcontrib><creatorcontrib>Kim, Yong-Min</creatorcontrib><creatorcontrib>Honaas, Loren</creatorcontrib><creatorcontrib>Yang, Zhenzhen</creatorcontrib><creatorcontrib>Spallek, Thomas</creatorcontrib><creatorcontrib>Conn, Caitlin E.</creatorcontrib><creatorcontrib>Ichihashi, Yasunori</creatorcontrib><creatorcontrib>Cheong, Kyeongchae</creatorcontrib><creatorcontrib>Cui, Songkui</creatorcontrib><creatorcontrib>Der, Joshua P.</creatorcontrib><creatorcontrib>Gundlach, Heidrun</creatorcontrib><creatorcontrib>Jiao, Yuannian</creatorcontrib><creatorcontrib>Hori, Chiaki</creatorcontrib><creatorcontrib>Ishida, Juliane K.</creatorcontrib><creatorcontrib>Kasahara, Hiroyuki</creatorcontrib><creatorcontrib>Kiba, Takatoshi</creatorcontrib><creatorcontrib>Kim, Myung-Shin</creatorcontrib><creatorcontrib>Koo, Namjin</creatorcontrib><creatorcontrib>Laohavisit, Anuphon</creatorcontrib><creatorcontrib>Lee, Yong-Hwan</creatorcontrib><creatorcontrib>Lumba, Shelley</creatorcontrib><creatorcontrib>McCourt, Peter</creatorcontrib><creatorcontrib>Mortimer, Jenny C.</creatorcontrib><creatorcontrib>Mutuku, J. Musembi</creatorcontrib><creatorcontrib>Nomura, Takahito</creatorcontrib><creatorcontrib>Sasaki-Sekimoto, Yuko</creatorcontrib><creatorcontrib>Seto, Yoshiya</creatorcontrib><creatorcontrib>Wang, Yu</creatorcontrib><creatorcontrib>Wakatake, Takanori</creatorcontrib><creatorcontrib>Sakakibara, Hitoshi</creatorcontrib><creatorcontrib>Demura, Taku</creatorcontrib><creatorcontrib>Yamaguchi, Shinjiro</creatorcontrib><creatorcontrib>Yoneyama, Koichi</creatorcontrib><creatorcontrib>Manabe, Ri-Ichiroh</creatorcontrib><creatorcontrib>Nelson, David C.</creatorcontrib><creatorcontrib>Schulman, Alan H.</creatorcontrib><creatorcontrib>Timko, Michael P.</creatorcontrib><creatorcontrib>DePamphilis, Claude W.</creatorcontrib><creatorcontrib>Choi, Doil</creatorcontrib><creatorcontrib>Shirasu, Ken</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Yoshida, Satoko</au><au>Kim, Seungill</au><au>Wafula, Eric K.</au><au>Tanskanen, Jaakko</au><au>Kim, Yong-Min</au><au>Honaas, Loren</au><au>Yang, Zhenzhen</au><au>Spallek, Thomas</au><au>Conn, Caitlin E.</au><au>Ichihashi, Yasunori</au><au>Cheong, Kyeongchae</au><au>Cui, Songkui</au><au>Der, Joshua P.</au><au>Gundlach, Heidrun</au><au>Jiao, Yuannian</au><au>Hori, Chiaki</au><au>Ishida, Juliane K.</au><au>Kasahara, Hiroyuki</au><au>Kiba, Takatoshi</au><au>Kim, Myung-Shin</au><au>Koo, Namjin</au><au>Laohavisit, Anuphon</au><au>Lee, Yong-Hwan</au><au>Lumba, Shelley</au><au>McCourt, Peter</au><au>Mortimer, Jenny C.</au><au>Mutuku, J. Musembi</au><au>Nomura, Takahito</au><au>Sasaki-Sekimoto, Yuko</au><au>Seto, Yoshiya</au><au>Wang, Yu</au><au>Wakatake, Takanori</au><au>Sakakibara, Hitoshi</au><au>Demura, Taku</au><au>Yamaguchi, Shinjiro</au><au>Yoneyama, Koichi</au><au>Manabe, Ri-Ichiroh</au><au>Nelson, David C.</au><au>Schulman, Alan H.</au><au>Timko, Michael P.</au><au>DePamphilis, Claude W.</au><au>Choi, Doil</au><au>Shirasu, Ken</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Data from: Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism</title><date>2019-09-12</date><risdate>2019</risdate><abstract>Parasitic plants in the genus Striga, commonly known as witchweeds, cause
major crop losses in sub-Saharan Africa and pose a threat to agriculture
worldwide. An understanding of Striga parasite biology, which could lead
to agricultural solutions, has been hampered by the lack of genome
information. Here we report the draft genome sequence of Striga asiatica
with 34,577 predicted protein-coding genes, which reflects gene family
contractions and expansions that are consistent with a three-phase model
of parasitic plant genome evolution. Striga seeds germinate in response to
host-derived strigolactones (SLs) and then develop a specialised
penetration structure, the haustorium, to invade the host root. A family
of SL receptors has undergone a striking expansion, suggesting a molecular
basis for the evolution of broad host range among Striga spp. We found
that genes involved in lateral root development in non-parasitic model
species are coordinately induced during haustorium development in Striga,
suggesting a pathway that was partly co-opted during the evolution of the
haustorium. In addition, we found evidence for horizontal transfer of host
genes as well as retrotransposons, indicating gene flow to S. asiatica
from hosts. Our results provide valuable insights into the evolution of
parasitism and a key resource for the future development of Striga control
strategies.</abstract><pub>Dryad</pub><doi>10.5061/dryad.53t3574</doi><oa>free_for_read</oa></addata></record> |
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subjects | Striga asiatica Striga hermonthica |
title | Data from: Genome sequence of Striga asiatica provides insight into the evolution of plant parasitism |
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