Microscopic resolution diffusion magnetic resonance images of a normal adult Sprague Dawley rat brain
Anatomical reference volume of a normal adult male Sprague Dawley rat brain, consisting of high resolution, contrast enhanced, structural magnetic resonance images (sMRI; 39 μm isotropic voxels) and diffusion tensor images (DTI, 78 μm isotropic voxels). Version 1.01 features a standardized orientati...
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| creator | Papp, E.A. Leergaard, T.B. Calabrese, E. Johnson, G.A. Bjaalie, J.G. |
| description | Anatomical reference volume of a normal adult male Sprague Dawley rat brain, consisting of high resolution, contrast enhanced, structural magnetic resonance images (sMRI; 39 μm isotropic voxels) and diffusion tensor images (DTI, 78 μm isotropic voxels). Version 1.01 features a standardized orientation of the volumetric datasets according to NIfTI-1 format defaults, allowing users to read Waxholm Space coordinates directly from the data volume using publicly available software (e.g. ITK-SNAP and MBAT). For details, see “Release notes v1.01”. This dataset is hosted on [NITRC.org](https://www.nitrc.org/frs/?group_id=1081) and includes: * [T2*-weighted gradient echo image](https://www.nitrc.org/frs/download.php/9423/WHS_SD_rat_T2star_v1.01.nii.gz) at 39 μm original resolution (1024x512x512 voxels) * [Apparent Diffusion Coefficient (ADC) map](https://www.nitrc.org/frs/download.php/9430/WHS_SD_rat_ADC_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [DTI b0 image](https://www.nitrc.org/frs/download.php/9431/WHS_SD_rat_DTI_512_v1.01.zip) resampled to 39 μm resolution (1024x512x512 voxels) * [Diffusion weighted image map](https://www.nitrc.org/frs/download.php/9429/WHS_SD_rat_DWI_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [Fractional Anisotropy (FA) map](https://www.nitrc.org/frs/download.php/9428/WHS_SD_rat_FA_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [Color FA map](https://www.nitrc.org/frs/download.php/9424/WHS_SD_rat_FA_color_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels), combining the FA and primary eigenvector to 24-bit color RGB where intensity is given by relative FA value and color is assigned to directions (RGB to xyz respectively) **How to cite:** Please cite these anatomical reference volumes by referring to the Waxholm Space atlas of the Sprague Dawley rat brain RRID: SCR_017124, and cite the publications (see Related publications below). |
| doi_str_mv | 10.25493/dtsg-zbs |
| format | Dataset |
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Version 1.01 features a standardized orientation of the volumetric datasets according to NIfTI-1 format defaults, allowing users to read Waxholm Space coordinates directly from the data volume using publicly available software (e.g. ITK-SNAP and MBAT). For details, see “Release notes v1.01”. This dataset is hosted on [NITRC.org](https://www.nitrc.org/frs/?group_id=1081) and includes: * [T2*-weighted gradient echo image](https://www.nitrc.org/frs/download.php/9423/WHS_SD_rat_T2star_v1.01.nii.gz) at 39 μm original resolution (1024x512x512 voxels) * [Apparent Diffusion Coefficient (ADC) map](https://www.nitrc.org/frs/download.php/9430/WHS_SD_rat_ADC_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [DTI b0 image](https://www.nitrc.org/frs/download.php/9431/WHS_SD_rat_DTI_512_v1.01.zip) resampled to 39 μm resolution (1024x512x512 voxels) * [Diffusion weighted image map](https://www.nitrc.org/frs/download.php/9429/WHS_SD_rat_DWI_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [Fractional Anisotropy (FA) map](https://www.nitrc.org/frs/download.php/9428/WHS_SD_rat_FA_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [Color FA map](https://www.nitrc.org/frs/download.php/9424/WHS_SD_rat_FA_color_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels), combining the FA and primary eigenvector to 24-bit color RGB where intensity is given by relative FA value and color is assigned to directions (RGB to xyz respectively) **How to cite:** Please cite these anatomical reference volumes by referring to the Waxholm Space atlas of the Sprague Dawley rat brain RRID: SCR_017124, and cite the publications (see Related publications below).</description><identifier>DOI: 10.25493/dtsg-zbs</identifier><language>eng</language><publisher>Human Brain Project Neuroinformatics Platform</publisher><subject>Neuroscience</subject><creationdate>2019</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>777,1888</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.25493/dtsg-zbs$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Papp, E.A.</creatorcontrib><creatorcontrib>Leergaard, T.B.</creatorcontrib><creatorcontrib>Calabrese, E.</creatorcontrib><creatorcontrib>Johnson, G.A.</creatorcontrib><creatorcontrib>Bjaalie, J.G.</creatorcontrib><title>Microscopic resolution diffusion magnetic resonance images of a normal adult Sprague Dawley rat brain</title><description>Anatomical reference volume of a normal adult male Sprague Dawley rat brain, consisting of high resolution, contrast enhanced, structural magnetic resonance images (sMRI; 39 μm isotropic voxels) and diffusion tensor images (DTI, 78 μm isotropic voxels). Version 1.01 features a standardized orientation of the volumetric datasets according to NIfTI-1 format defaults, allowing users to read Waxholm Space coordinates directly from the data volume using publicly available software (e.g. ITK-SNAP and MBAT). For details, see “Release notes v1.01”. This dataset is hosted on [NITRC.org](https://www.nitrc.org/frs/?group_id=1081) and includes: * [T2*-weighted gradient echo image](https://www.nitrc.org/frs/download.php/9423/WHS_SD_rat_T2star_v1.01.nii.gz) at 39 μm original resolution (1024x512x512 voxels) * [Apparent Diffusion Coefficient (ADC) map](https://www.nitrc.org/frs/download.php/9430/WHS_SD_rat_ADC_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [DTI b0 image](https://www.nitrc.org/frs/download.php/9431/WHS_SD_rat_DTI_512_v1.01.zip) resampled to 39 μm resolution (1024x512x512 voxels) * [Diffusion weighted image map](https://www.nitrc.org/frs/download.php/9429/WHS_SD_rat_DWI_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [Fractional Anisotropy (FA) map](https://www.nitrc.org/frs/download.php/9428/WHS_SD_rat_FA_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [Color FA map](https://www.nitrc.org/frs/download.php/9424/WHS_SD_rat_FA_color_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels), combining the FA and primary eigenvector to 24-bit color RGB where intensity is given by relative FA value and color is assigned to directions (RGB to xyz respectively) **How to cite:** Please cite these anatomical reference volumes by referring to the Waxholm Space atlas of the Sprague Dawley rat brain RRID: SCR_017124, and cite the publications (see Related publications below).</description><subject>Neuroscience</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2019</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNqVjr0OwjAQg7MwIGDgDW5lKLQUBmZ-xMIEe3RNLlWkNKkuqVB5elrUF2CyZVvWJ8S6yLf74-FU7nSKdfap4lzQwyoOUYXWKmCKwXXJBg_aGtPF0TVYe0pT69ErAjtkFCEYQPCBG3SAunMJni1j3RFc8O2oB8YEFaP1SzEz6CKtJl2Ize36Ot8zjQmVTSRbHk65l0Uuf4hyRJQDYvnP9gtB9kzR</recordid><startdate>20190921</startdate><enddate>20190921</enddate><creator>Papp, E.A.</creator><creator>Leergaard, T.B.</creator><creator>Calabrese, E.</creator><creator>Johnson, G.A.</creator><creator>Bjaalie, J.G.</creator><general>Human Brain Project Neuroinformatics Platform</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20190921</creationdate><title>Microscopic resolution diffusion magnetic resonance images of a normal adult Sprague Dawley rat brain</title><author>Papp, E.A. ; Leergaard, T.B. ; Calabrese, E. ; Johnson, G.A. ; Bjaalie, J.G.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_25493_dtsg_zbs3</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Neuroscience</topic><toplevel>online_resources</toplevel><creatorcontrib>Papp, E.A.</creatorcontrib><creatorcontrib>Leergaard, T.B.</creatorcontrib><creatorcontrib>Calabrese, E.</creatorcontrib><creatorcontrib>Johnson, G.A.</creatorcontrib><creatorcontrib>Bjaalie, J.G.</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Papp, E.A.</au><au>Leergaard, T.B.</au><au>Calabrese, E.</au><au>Johnson, G.A.</au><au>Bjaalie, J.G.</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Microscopic resolution diffusion magnetic resonance images of a normal adult Sprague Dawley rat brain</title><date>2019-09-21</date><risdate>2019</risdate><abstract>Anatomical reference volume of a normal adult male Sprague Dawley rat brain, consisting of high resolution, contrast enhanced, structural magnetic resonance images (sMRI; 39 μm isotropic voxels) and diffusion tensor images (DTI, 78 μm isotropic voxels). Version 1.01 features a standardized orientation of the volumetric datasets according to NIfTI-1 format defaults, allowing users to read Waxholm Space coordinates directly from the data volume using publicly available software (e.g. ITK-SNAP and MBAT). For details, see “Release notes v1.01”. This dataset is hosted on [NITRC.org](https://www.nitrc.org/frs/?group_id=1081) and includes: * [T2*-weighted gradient echo image](https://www.nitrc.org/frs/download.php/9423/WHS_SD_rat_T2star_v1.01.nii.gz) at 39 μm original resolution (1024x512x512 voxels) * [Apparent Diffusion Coefficient (ADC) map](https://www.nitrc.org/frs/download.php/9430/WHS_SD_rat_ADC_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [DTI b0 image](https://www.nitrc.org/frs/download.php/9431/WHS_SD_rat_DTI_512_v1.01.zip) resampled to 39 μm resolution (1024x512x512 voxels) * [Diffusion weighted image map](https://www.nitrc.org/frs/download.php/9429/WHS_SD_rat_DWI_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [Fractional Anisotropy (FA) map](https://www.nitrc.org/frs/download.php/9428/WHS_SD_rat_FA_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels) * [Color FA map](https://www.nitrc.org/frs/download.php/9424/WHS_SD_rat_FA_color_v1.01.nii.gz) resampled to 39 μm resolution (1024x512x512 voxels), combining the FA and primary eigenvector to 24-bit color RGB where intensity is given by relative FA value and color is assigned to directions (RGB to xyz respectively) **How to cite:** Please cite these anatomical reference volumes by referring to the Waxholm Space atlas of the Sprague Dawley rat brain RRID: SCR_017124, and cite the publications (see Related publications below).</abstract><pub>Human Brain Project Neuroinformatics Platform</pub><doi>10.25493/dtsg-zbs</doi><oa>free_for_read</oa></addata></record> |
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| subjects | Neuroscience |
| title | Microscopic resolution diffusion magnetic resonance images of a normal adult Sprague Dawley rat brain |
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