FRETsg: Biomolecular structure model building from multiple FRET experiments
Abstract Fluorescence energy transfer (FRET) experiments of site-specifically labelled proteins allow one to determine distances between residues at the single molecule level, which provide information on the three-dimensional structural dynamics of the biomolecule. To systematically extract this in...
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creator | Schröder, G.F. |
description | Abstract Fluorescence energy transfer (FRET) experiments of site-specifically labelled proteins allow one to determine distances between residues at the single molecule level, which provide information on the three-dimensional structural dynamics of the biomolecule. To systematically extract this information from the experimental data, we describe a program that generates an ensemble of configurations of residues in space that agree with the experimental distances between these positions. Furthermore,... Title of program: FRETsg Catalogue Id: ADTU_v1_0 Nature of problem Given an arbitrary number of distances distributions between an arbitrary number of points in three-dimensional space, find all configurations (set of coordinates) that obey the given distances. Versions of this program held in the CPC repository in Mendeley Data ADTU_v1_0; FRETsg; 10.1016/j.cpc.2004.02.001 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) |
doi_str_mv | 10.17632/jjkrsvhh5v.1 |
format | Dataset |
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To systematically extract this information from the experimental data, we describe a program that generates an ensemble of configurations of residues in space that agree with the experimental distances between these positions. Furthermore,... Title of program: FRETsg Catalogue Id: ADTU_v1_0 Nature of problem Given an arbitrary number of distances distributions between an arbitrary number of points in three-dimensional space, find all configurations (set of coordinates) that obey the given distances. Versions of this program held in the CPC repository in Mendeley Data ADTU_v1_0; FRETsg; 10.1016/j.cpc.2004.02.001 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)</description><identifier>DOI: 10.17632/jjkrsvhh5v.1</identifier><language>eng</language><publisher>Mendeley</publisher><subject>Biological Sciences ; Computational Physics ; Molecular Biology ; Molecular Physics ; Physical Chemistry</subject><creationdate>2019</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>780,1894</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.17632/jjkrsvhh5v.1$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Schröder, G.F.</creatorcontrib><title>FRETsg: Biomolecular structure model building from multiple FRET experiments</title><description>Abstract Fluorescence energy transfer (FRET) experiments of site-specifically labelled proteins allow one to determine distances between residues at the single molecule level, which provide information on the three-dimensional structural dynamics of the biomolecule. To systematically extract this information from the experimental data, we describe a program that generates an ensemble of configurations of residues in space that agree with the experimental distances between these positions. Furthermore,... Title of program: FRETsg Catalogue Id: ADTU_v1_0 Nature of problem Given an arbitrary number of distances distributions between an arbitrary number of points in three-dimensional space, find all configurations (set of coordinates) that obey the given distances. Versions of this program held in the CPC repository in Mendeley Data ADTU_v1_0; FRETsg; 10.1016/j.cpc.2004.02.001 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)</description><subject>Biological Sciences</subject><subject>Computational Physics</subject><subject>Molecular Biology</subject><subject>Molecular Physics</subject><subject>Physical Chemistry</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2019</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNqVjrsOgjAUQLs4GHV0vz8AUomaOGogDk6GvalwgeItJX0Q_XsfMXF2Oss5yWFsyZOY77bpetV1N-vGtt2MMZ-yc37JCtfs4aCMNoRlIGnBeRtKHyyCNhUSXIOiSvUN1NZo0IG8Ggjh3QLeB7RKY-_dnE1qSQ4XX85YlGfF8RRV0stSeRTDy5T2IXgiPjfidyN4-q__BGt8RuU</recordid><startdate>20191205</startdate><enddate>20191205</enddate><creator>Schröder, G.F.</creator><general>Mendeley</general><scope>DYCCY</scope><scope>PQ8</scope></search><sort><creationdate>20191205</creationdate><title>FRETsg: Biomolecular structure model building from multiple FRET experiments</title><author>Schröder, G.F.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_17632_jjkrsvhh5v_13</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2019</creationdate><topic>Biological Sciences</topic><topic>Computational Physics</topic><topic>Molecular Biology</topic><topic>Molecular Physics</topic><topic>Physical Chemistry</topic><toplevel>online_resources</toplevel><creatorcontrib>Schröder, G.F.</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Schröder, G.F.</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>FRETsg: Biomolecular structure model building from multiple FRET experiments</title><date>2019-12-05</date><risdate>2019</risdate><abstract>Abstract Fluorescence energy transfer (FRET) experiments of site-specifically labelled proteins allow one to determine distances between residues at the single molecule level, which provide information on the three-dimensional structural dynamics of the biomolecule. To systematically extract this information from the experimental data, we describe a program that generates an ensemble of configurations of residues in space that agree with the experimental distances between these positions. Furthermore,... Title of program: FRETsg Catalogue Id: ADTU_v1_0 Nature of problem Given an arbitrary number of distances distributions between an arbitrary number of points in three-dimensional space, find all configurations (set of coordinates) that obey the given distances. Versions of this program held in the CPC repository in Mendeley Data ADTU_v1_0; FRETsg; 10.1016/j.cpc.2004.02.001 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)</abstract><pub>Mendeley</pub><doi>10.17632/jjkrsvhh5v.1</doi><oa>free_for_read</oa></addata></record> |
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subjects | Biological Sciences Computational Physics Molecular Biology Molecular Physics Physical Chemistry |
title | FRETsg: Biomolecular structure model building from multiple FRET experiments |
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