Seawater carbonate chemistry and gene expression (RT-PCR) and enzyme activity of the Antarctic coral Malacobelemnon daytoni
Benthic organisms of the Southern Ocean are particularly vulnerable to ocean acidification (OA), as they inhabit cold waters where calcite-aragonite saturation states are naturally low. OA most strongly affects animals with calcium carbonate skeletons or shells, such as corals and mollusks. We expos...
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creator | Servetto, Natalia de Aranzamendi, M C Bettencourt, Raul Held, Christoph Abele, Doris Movilla, Juancho González, G Bustos, D M Sahade, Ricardo José |
description | Benthic organisms of the Southern Ocean are particularly vulnerable to ocean acidification (OA), as they inhabit cold waters where calcite-aragonite saturation states are naturally low. OA most strongly affects animals with calcium carbonate skeletons or shells, such as corals and mollusks. We exposed the abundant cold-water coral Malacobelemnon daytoni from an Antarctic fjord to low pH seawater (LpH) (7.68 +/- 0.17) to test its physiological responses to OA, at the level of gene expression (RT-PCR) and enzyme activity. Corals were exposed in short- (3 days) and long-term (54 days) experiments to two pCO2 conditions (ambient and elevated pCO2 equaling RCP 8.5, IPCC 2019, approximately 372.53 and 956.78 μatm, respectively).Of the eleven genes studied through RT-PCR, six were significantly upregulated compared with control in the short-term in the LpH condition, including the antioxidant enzyme superoxide dismutase (SOD), Heat Shock Protein 70 (HSP70), Toll-like receptor (TLR), galaxin and ferritin. After long-term exposure to low pH conditions, RT-PCR analysis showed seven genes were upregulated. These include the mannose-binding C-Lectin and HSP90. Also, the expression of TLR and galaxin, among others, continued to be upregulated after long-term exposure to low pH. Expression of carbonic anhydrase (CA), a key enzyme involved in calcification, was also significantly upregulated after long-term exposure. Our results indicated that, after two months, M. daytoni is not acclimatized to this experimental LpH condition. Gene expression profiles revealed molecular impacts that were not evident at the enzyme activity level. Consequently, understanding the molecular mechanisms behind the physiological processes in the response of a coral to LpH is critical to understanding the ability of polar species to cope with future environmental changes. Approaches integrating molecular tools into Antarctic ecological and/or conservation research make an essential contribution given the current ongoing OA processes. |
doi_str_mv | 10.1594/pangaea.936683 |
format | Dataset |
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OA most strongly affects animals with calcium carbonate skeletons or shells, such as corals and mollusks. We exposed the abundant cold-water coral Malacobelemnon daytoni from an Antarctic fjord to low pH seawater (LpH) (7.68 +/- 0.17) to test its physiological responses to OA, at the level of gene expression (RT-PCR) and enzyme activity. Corals were exposed in short- (3 days) and long-term (54 days) experiments to two pCO2 conditions (ambient and elevated pCO2 equaling RCP 8.5, IPCC 2019, approximately 372.53 and 956.78 μatm, respectively).Of the eleven genes studied through RT-PCR, six were significantly upregulated compared with control in the short-term in the LpH condition, including the antioxidant enzyme superoxide dismutase (SOD), Heat Shock Protein 70 (HSP70), Toll-like receptor (TLR), galaxin and ferritin. After long-term exposure to low pH conditions, RT-PCR analysis showed seven genes were upregulated. These include the mannose-binding C-Lectin and HSP90. Also, the expression of TLR and galaxin, among others, continued to be upregulated after long-term exposure to low pH. Expression of carbonic anhydrase (CA), a key enzyme involved in calcification, was also significantly upregulated after long-term exposure. Our results indicated that, after two months, M. daytoni is not acclimatized to this experimental LpH condition. Gene expression profiles revealed molecular impacts that were not evident at the enzyme activity level. Consequently, understanding the molecular mechanisms behind the physiological processes in the response of a coral to LpH is critical to understanding the ability of polar species to cope with future environmental changes. Approaches integrating molecular tools into Antarctic ecological and/or conservation research make an essential contribution given the current ongoing OA processes.</description><identifier>DOI: 10.1594/pangaea.936683</identifier><language>eng</language><publisher>PANGAEA</publisher><subject>Alkalinity, total ; Alkalinity, total, standard deviation ; Animalia ; Antarctic ; Aragonite saturation state ; Aragonite saturation state, standard deviation ; Benthic animals ; Benthos ; Bicarbonate ion ; Bicarbonate ion, standard deviation ; Calcite saturation state ; Calcite saturation state, standard deviation ; Calculated using CO2SYS ; Calculated using seacarb after Nisumaa et al. ; Calculated using seacarb after Orr et al. ; Carbon dioxide ; Carbon dioxide, standard deviation ; Carbon, inorganic, dissolved ; Carbon, inorganic, dissolved, standard deviation ; Carbonate ion ; Carbonate ion, standard deviation ; Carbonate system computation flag ; Catalase activity, unit per protein mass ; Cnidaria ; Coast and continental shelf ; Containers and aquaria (20-1000 L or < 1 m2) ; Day of experiment ; Dry air column-averaged mixing ratio of carbon dioxide ; Dry air column-averaged mixing ratio of carbon dioxide, standard deviation ; Experiment ; Fugacity of carbon dioxide (water) at sea surface temperature (wet air) ; Fugacity of carbon dioxide in seawater, standard deviation ; Gene expression ; Gene expression (incl. proteomics) ; Laboratory experiment ; Malacobelemnon daytoni ; Ocean Acidification International Coordination Centre (OA-ICC) ; Other metabolic rates ; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) ; Partial pressure of carbon dioxide, standard deviation ; pH, standard deviation ; pH, total scale ; Polar ; Potentiometric ; Potentiometric titration ; Registration number of species ; Salinity ; Salinity, standard deviation ; Sample ID ; Single species ; Species ; Superoxide dismutase activity, unit per protein mass ; Temperature, water ; Temperature, water, standard deviation ; Treatment ; Type ; Uniform resource locator/link to reference</subject><creationdate>2021</creationdate><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><orcidid>0000-0002-7637-328X ; 0000-0001-9030-5622 ; 0000-0001-8854-3234 ; 0000-0003-4442-0384 ; 0000-0001-6866-7029 ; 0000-0001-5650-8135 ; 0000-0002-3713-9116 ; 0000-0002-5766-5017 ; 0000-0003-4502-9088</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>776,1888</link.rule.ids><linktorsrc>$$Uhttps://commons.datacite.org/doi.org/10.1594/pangaea.936683$$EView_record_in_DataCite.org$$FView_record_in_$$GDataCite.org$$Hfree_for_read</linktorsrc></links><search><creatorcontrib>Servetto, Natalia</creatorcontrib><creatorcontrib>de Aranzamendi, M C</creatorcontrib><creatorcontrib>Bettencourt, Raul</creatorcontrib><creatorcontrib>Held, Christoph</creatorcontrib><creatorcontrib>Abele, Doris</creatorcontrib><creatorcontrib>Movilla, Juancho</creatorcontrib><creatorcontrib>González, G</creatorcontrib><creatorcontrib>Bustos, D M</creatorcontrib><creatorcontrib>Sahade, Ricardo José</creatorcontrib><title>Seawater carbonate chemistry and gene expression (RT-PCR) and enzyme activity of the Antarctic coral Malacobelemnon daytoni</title><description>Benthic organisms of the Southern Ocean are particularly vulnerable to ocean acidification (OA), as they inhabit cold waters where calcite-aragonite saturation states are naturally low. OA most strongly affects animals with calcium carbonate skeletons or shells, such as corals and mollusks. We exposed the abundant cold-water coral Malacobelemnon daytoni from an Antarctic fjord to low pH seawater (LpH) (7.68 +/- 0.17) to test its physiological responses to OA, at the level of gene expression (RT-PCR) and enzyme activity. Corals were exposed in short- (3 days) and long-term (54 days) experiments to two pCO2 conditions (ambient and elevated pCO2 equaling RCP 8.5, IPCC 2019, approximately 372.53 and 956.78 μatm, respectively).Of the eleven genes studied through RT-PCR, six were significantly upregulated compared with control in the short-term in the LpH condition, including the antioxidant enzyme superoxide dismutase (SOD), Heat Shock Protein 70 (HSP70), Toll-like receptor (TLR), galaxin and ferritin. After long-term exposure to low pH conditions, RT-PCR analysis showed seven genes were upregulated. These include the mannose-binding C-Lectin and HSP90. Also, the expression of TLR and galaxin, among others, continued to be upregulated after long-term exposure to low pH. Expression of carbonic anhydrase (CA), a key enzyme involved in calcification, was also significantly upregulated after long-term exposure. Our results indicated that, after two months, M. daytoni is not acclimatized to this experimental LpH condition. Gene expression profiles revealed molecular impacts that were not evident at the enzyme activity level. Consequently, understanding the molecular mechanisms behind the physiological processes in the response of a coral to LpH is critical to understanding the ability of polar species to cope with future environmental changes. Approaches integrating molecular tools into Antarctic ecological and/or conservation research make an essential contribution given the current ongoing OA processes.</description><subject>Alkalinity, total</subject><subject>Alkalinity, total, standard deviation</subject><subject>Animalia</subject><subject>Antarctic</subject><subject>Aragonite saturation state</subject><subject>Aragonite saturation state, standard deviation</subject><subject>Benthic animals</subject><subject>Benthos</subject><subject>Bicarbonate ion</subject><subject>Bicarbonate ion, standard deviation</subject><subject>Calcite saturation state</subject><subject>Calcite saturation state, standard deviation</subject><subject>Calculated using CO2SYS</subject><subject>Calculated using seacarb after Nisumaa et al.</subject><subject>Calculated using seacarb after Orr et al.</subject><subject>Carbon dioxide</subject><subject>Carbon dioxide, standard deviation</subject><subject>Carbon, inorganic, dissolved</subject><subject>Carbon, inorganic, dissolved, standard deviation</subject><subject>Carbonate ion</subject><subject>Carbonate ion, standard deviation</subject><subject>Carbonate system computation flag</subject><subject>Catalase activity, unit per protein mass</subject><subject>Cnidaria</subject><subject>Coast and continental shelf</subject><subject>Containers and aquaria (20-1000 L or < 1 m2)</subject><subject>Day of experiment</subject><subject>Dry air column-averaged mixing ratio of carbon dioxide</subject><subject>Dry air column-averaged mixing ratio of carbon dioxide, standard deviation</subject><subject>Experiment</subject><subject>Fugacity of carbon dioxide (water) at sea surface temperature (wet air)</subject><subject>Fugacity of carbon dioxide in seawater, standard deviation</subject><subject>Gene expression</subject><subject>Gene expression (incl. proteomics)</subject><subject>Laboratory experiment</subject><subject>Malacobelemnon daytoni</subject><subject>Ocean Acidification International Coordination Centre (OA-ICC)</subject><subject>Other metabolic rates</subject><subject>Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)</subject><subject>Partial pressure of carbon dioxide, standard deviation</subject><subject>pH, standard deviation</subject><subject>pH, total scale</subject><subject>Polar</subject><subject>Potentiometric</subject><subject>Potentiometric titration</subject><subject>Registration number of species</subject><subject>Salinity</subject><subject>Salinity, standard deviation</subject><subject>Sample ID</subject><subject>Single species</subject><subject>Species</subject><subject>Superoxide dismutase activity, unit per protein mass</subject><subject>Temperature, water</subject><subject>Temperature, water, standard deviation</subject><subject>Treatment</subject><subject>Type</subject><subject>Uniform resource locator/link to reference</subject><fulltext>true</fulltext><rsrctype>dataset</rsrctype><creationdate>2021</creationdate><recordtype>dataset</recordtype><sourceid>PQ8</sourceid><recordid>eNqVjrFuwkAQRK9JgUha6i1JgYNlQFBGCJQmUgT0p_F5gZPsPeu8glzy83ESfoBqRjOa0TNmlE-zfL6avbSQExjZqlgslsXAfO8ZVyhHcohlkN6SO3PjO42JIBWdWJj4s43cdT4IjXeHycd69_xXsnylhglO_cVronAkPTO9iiL2mSMXImp6Rw0XSq65kf6iQtIg_tE8HFF3_HTTocm2m8P6bVJB4byybaNvEJPNp_aX3t7o7T99cffgBxjcVsg</recordid><startdate>2021</startdate><enddate>2021</enddate><creator>Servetto, Natalia</creator><creator>de Aranzamendi, M C</creator><creator>Bettencourt, Raul</creator><creator>Held, Christoph</creator><creator>Abele, Doris</creator><creator>Movilla, Juancho</creator><creator>González, G</creator><creator>Bustos, D M</creator><creator>Sahade, Ricardo José</creator><general>PANGAEA</general><scope>DYCCY</scope><scope>PQ8</scope><orcidid>https://orcid.org/0000-0002-7637-328X</orcidid><orcidid>https://orcid.org/0000-0001-9030-5622</orcidid><orcidid>https://orcid.org/0000-0001-8854-3234</orcidid><orcidid>https://orcid.org/0000-0003-4442-0384</orcidid><orcidid>https://orcid.org/0000-0001-6866-7029</orcidid><orcidid>https://orcid.org/0000-0001-5650-8135</orcidid><orcidid>https://orcid.org/0000-0002-3713-9116</orcidid><orcidid>https://orcid.org/0000-0002-5766-5017</orcidid><orcidid>https://orcid.org/0000-0003-4502-9088</orcidid></search><sort><creationdate>2021</creationdate><title>Seawater carbonate chemistry and gene expression (RT-PCR) and enzyme activity of the Antarctic coral Malacobelemnon daytoni</title><author>Servetto, Natalia ; de Aranzamendi, M C ; Bettencourt, Raul ; Held, Christoph ; Abele, Doris ; Movilla, Juancho ; González, G ; Bustos, D M ; Sahade, Ricardo José</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-datacite_primary_10_1594_pangaea_9366833</frbrgroupid><rsrctype>datasets</rsrctype><prefilter>datasets</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Alkalinity, total</topic><topic>Alkalinity, total, standard deviation</topic><topic>Animalia</topic><topic>Antarctic</topic><topic>Aragonite saturation state</topic><topic>Aragonite saturation state, standard deviation</topic><topic>Benthic animals</topic><topic>Benthos</topic><topic>Bicarbonate ion</topic><topic>Bicarbonate ion, standard deviation</topic><topic>Calcite saturation state</topic><topic>Calcite saturation state, standard deviation</topic><topic>Calculated using CO2SYS</topic><topic>Calculated using seacarb after Nisumaa et al.</topic><topic>Calculated using seacarb after Orr et al.</topic><topic>Carbon dioxide</topic><topic>Carbon dioxide, standard deviation</topic><topic>Carbon, inorganic, dissolved</topic><topic>Carbon, inorganic, dissolved, standard deviation</topic><topic>Carbonate ion</topic><topic>Carbonate ion, standard deviation</topic><topic>Carbonate system computation flag</topic><topic>Catalase activity, unit per protein mass</topic><topic>Cnidaria</topic><topic>Coast and continental shelf</topic><topic>Containers and aquaria (20-1000 L or < 1 m2)</topic><topic>Day of experiment</topic><topic>Dry air column-averaged mixing ratio of carbon dioxide</topic><topic>Dry air column-averaged mixing ratio of carbon dioxide, standard deviation</topic><topic>Experiment</topic><topic>Fugacity of carbon dioxide (water) at sea surface temperature (wet air)</topic><topic>Fugacity of carbon dioxide in seawater, standard deviation</topic><topic>Gene expression</topic><topic>Gene expression (incl. proteomics)</topic><topic>Laboratory experiment</topic><topic>Malacobelemnon daytoni</topic><topic>Ocean Acidification International Coordination Centre (OA-ICC)</topic><topic>Other metabolic rates</topic><topic>Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)</topic><topic>Partial pressure of carbon dioxide, standard deviation</topic><topic>pH, standard deviation</topic><topic>pH, total scale</topic><topic>Polar</topic><topic>Potentiometric</topic><topic>Potentiometric titration</topic><topic>Registration number of species</topic><topic>Salinity</topic><topic>Salinity, standard deviation</topic><topic>Sample ID</topic><topic>Single species</topic><topic>Species</topic><topic>Superoxide dismutase activity, unit per protein mass</topic><topic>Temperature, water</topic><topic>Temperature, water, standard deviation</topic><topic>Treatment</topic><topic>Type</topic><topic>Uniform resource locator/link to reference</topic><toplevel>online_resources</toplevel><creatorcontrib>Servetto, Natalia</creatorcontrib><creatorcontrib>de Aranzamendi, M C</creatorcontrib><creatorcontrib>Bettencourt, Raul</creatorcontrib><creatorcontrib>Held, Christoph</creatorcontrib><creatorcontrib>Abele, Doris</creatorcontrib><creatorcontrib>Movilla, Juancho</creatorcontrib><creatorcontrib>González, G</creatorcontrib><creatorcontrib>Bustos, D M</creatorcontrib><creatorcontrib>Sahade, Ricardo José</creatorcontrib><collection>DataCite (Open Access)</collection><collection>DataCite</collection></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Servetto, Natalia</au><au>de Aranzamendi, M C</au><au>Bettencourt, Raul</au><au>Held, Christoph</au><au>Abele, Doris</au><au>Movilla, Juancho</au><au>González, G</au><au>Bustos, D M</au><au>Sahade, Ricardo José</au><format>book</format><genre>unknown</genre><ristype>DATA</ristype><title>Seawater carbonate chemistry and gene expression (RT-PCR) and enzyme activity of the Antarctic coral Malacobelemnon daytoni</title><date>2021</date><risdate>2021</risdate><abstract>Benthic organisms of the Southern Ocean are particularly vulnerable to ocean acidification (OA), as they inhabit cold waters where calcite-aragonite saturation states are naturally low. OA most strongly affects animals with calcium carbonate skeletons or shells, such as corals and mollusks. We exposed the abundant cold-water coral Malacobelemnon daytoni from an Antarctic fjord to low pH seawater (LpH) (7.68 +/- 0.17) to test its physiological responses to OA, at the level of gene expression (RT-PCR) and enzyme activity. Corals were exposed in short- (3 days) and long-term (54 days) experiments to two pCO2 conditions (ambient and elevated pCO2 equaling RCP 8.5, IPCC 2019, approximately 372.53 and 956.78 μatm, respectively).Of the eleven genes studied through RT-PCR, six were significantly upregulated compared with control in the short-term in the LpH condition, including the antioxidant enzyme superoxide dismutase (SOD), Heat Shock Protein 70 (HSP70), Toll-like receptor (TLR), galaxin and ferritin. After long-term exposure to low pH conditions, RT-PCR analysis showed seven genes were upregulated. These include the mannose-binding C-Lectin and HSP90. Also, the expression of TLR and galaxin, among others, continued to be upregulated after long-term exposure to low pH. Expression of carbonic anhydrase (CA), a key enzyme involved in calcification, was also significantly upregulated after long-term exposure. Our results indicated that, after two months, M. daytoni is not acclimatized to this experimental LpH condition. Gene expression profiles revealed molecular impacts that were not evident at the enzyme activity level. Consequently, understanding the molecular mechanisms behind the physiological processes in the response of a coral to LpH is critical to understanding the ability of polar species to cope with future environmental changes. Approaches integrating molecular tools into Antarctic ecological and/or conservation research make an essential contribution given the current ongoing OA processes.</abstract><pub>PANGAEA</pub><doi>10.1594/pangaea.936683</doi><orcidid>https://orcid.org/0000-0002-7637-328X</orcidid><orcidid>https://orcid.org/0000-0001-9030-5622</orcidid><orcidid>https://orcid.org/0000-0001-8854-3234</orcidid><orcidid>https://orcid.org/0000-0003-4442-0384</orcidid><orcidid>https://orcid.org/0000-0001-6866-7029</orcidid><orcidid>https://orcid.org/0000-0001-5650-8135</orcidid><orcidid>https://orcid.org/0000-0002-3713-9116</orcidid><orcidid>https://orcid.org/0000-0002-5766-5017</orcidid><orcidid>https://orcid.org/0000-0003-4502-9088</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Alkalinity, total Alkalinity, total, standard deviation Animalia Antarctic Aragonite saturation state Aragonite saturation state, standard deviation Benthic animals Benthos Bicarbonate ion Bicarbonate ion, standard deviation Calcite saturation state Calcite saturation state, standard deviation Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. Calculated using seacarb after Orr et al. Carbon dioxide Carbon dioxide, standard deviation Carbon, inorganic, dissolved Carbon, inorganic, dissolved, standard deviation Carbonate ion Carbonate ion, standard deviation Carbonate system computation flag Catalase activity, unit per protein mass Cnidaria Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m2) Day of experiment Dry air column-averaged mixing ratio of carbon dioxide Dry air column-averaged mixing ratio of carbon dioxide, standard deviation Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater, standard deviation Gene expression Gene expression (incl. proteomics) Laboratory experiment Malacobelemnon daytoni Ocean Acidification International Coordination Centre (OA-ICC) Other metabolic rates Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Partial pressure of carbon dioxide, standard deviation pH, standard deviation pH, total scale Polar Potentiometric Potentiometric titration Registration number of species Salinity Salinity, standard deviation Sample ID Single species Species Superoxide dismutase activity, unit per protein mass Temperature, water Temperature, water, standard deviation Treatment Type Uniform resource locator/link to reference |
title | Seawater carbonate chemistry and gene expression (RT-PCR) and enzyme activity of the Antarctic coral Malacobelemnon daytoni |
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