Evaluation of Selective COX-2 Inhibition and In Silico Study of Kuwanon Derivatives Isolated from Morus alba
Six kuwanon derivatives (A/B/C/E/H/J) extracted from the roots of Morus alba L. were evaluated to determine their cyclooxygenase (COX)-1 and 2 inhibitory effects. Cyclooxygenase (COX) is known as the target enzyme of nonsteroidal anti-inflammatory drugs (NSAIDs), which are the most widely used thera...
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description | Six kuwanon derivatives (A/B/C/E/H/J) extracted from the roots of Morus alba L. were evaluated to determine their cyclooxygenase (COX)-1 and 2 inhibitory effects. Cyclooxygenase (COX) is known as the target enzyme of nonsteroidal anti-inflammatory drugs (NSAIDs), which are the most widely used therapeutic agents for pain and inflammation. Among six kuwanon derivatives, kuwanon A showed selective COX-2 inhibitory activity, almost equivalent to that of celecoxib, a known COX inhibitor. Kuwanon A showed high COX-2 inhibitory activity (IC50 = 14 mu M) and a selectivity index (SI) range of >7.1, comparable to celecoxib (SI > 6.3). To understand the mechanisms underlying this effect, we performed docking simulations, fragment molecular orbital (FMO) calculations, and pair interaction energy decomposition analysis (PIEDA) at the quantum-mechanical level. As a result, kuwanon A had the strongest interaction with Arg120 and Tyr355 at the gate of the COX active site (-7.044 kcal/mol) and with Val89 in the membrane-binding domain (-6.599 kcal/mol). In addition, kuwanon A closely bound to Val89, His90, and Ser119, which are residues at the entrance and exit routes of the COX active site (4.329 angstrom). FMO calculations and PIEDA well supported the COX-2 selective inhibitory action of kuwanon A. It showed that the simulation and modeling results and experimental evidence were consistent. |
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Cyclooxygenase (COX) is known as the target enzyme of nonsteroidal anti-inflammatory drugs (NSAIDs), which are the most widely used therapeutic agents for pain and inflammation. Among six kuwanon derivatives, kuwanon A showed selective COX-2 inhibitory activity, almost equivalent to that of celecoxib, a known COX inhibitor. Kuwanon A showed high COX-2 inhibitory activity (IC50 = 14 mu M) and a selectivity index (SI) range of >7.1, comparable to celecoxib (SI > 6.3). To understand the mechanisms underlying this effect, we performed docking simulations, fragment molecular orbital (FMO) calculations, and pair interaction energy decomposition analysis (PIEDA) at the quantum-mechanical level. As a result, kuwanon A had the strongest interaction with Arg120 and Tyr355 at the gate of the COX active site (-7.044 kcal/mol) and with Val89 in the membrane-binding domain (-6.599 kcal/mol). In addition, kuwanon A closely bound to Val89, His90, and Ser119, which are residues at the entrance and exit routes of the COX active site (4.329 angstrom). FMO calculations and PIEDA well supported the COX-2 selective inhibitory action of kuwanon A. It showed that the simulation and modeling results and experimental evidence were consistent.</description><identifier>ISSN: 1422-0067</identifier><identifier>ISSN: 1661-6596</identifier><identifier>EISSN: 1422-0067</identifier><identifier>DOI: 10.3390/ijms22073659</identifier><identifier>PMID: 33915826</identifier><language>eng</language><publisher>BASEL: Mdpi</publisher><subject><![CDATA[Amino acids ; Benzene Derivatives - isolation & purification ; Benzene Derivatives - pharmacology ; Binding sites ; Biochemistry & Molecular Biology ; Celecoxib ; Chemical compounds ; Chemistry ; Chemistry, Multidisciplinary ; Cyclooxygenase 2 Inhibitors - isolation & purification ; cyclooxygenase inhibition assay ; Cyclooxygenase-2 ; docking simulation ; Energy ; Entrances ; Enzymes ; Flavonoids - isolation & purification ; Flavonoids - pharmacology ; Inflammation ; kuwanon A ; Life Sciences & Biomedicine ; Molecular Docking Simulation ; Molecular orbitals ; Morus - chemistry ; Morus alba ; Nonsteroidal anti-inflammatory drugs ; Pharmacology ; Physical Sciences ; Plant Extracts - chemistry ; quantum mechanics ; Science & Technology ; Selectivity]]></subject><ispartof>International journal of molecular sciences, 2021-04, Vol.22 (7), p.3659, Article 3659</ispartof><rights>2021 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 by the authors. 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>true</woscitedreferencessubscribed><woscitedreferencescount>20</woscitedreferencescount><woscitedreferencesoriginalsourcerecordid>wos000638609000001</woscitedreferencesoriginalsourcerecordid><citedby>FETCH-LOGICAL-c544t-9f1400cae8b7e38d4ba1cc01e2e4f6087cfa46e26162975671cb325672085d323</citedby><cites>FETCH-LOGICAL-c544t-9f1400cae8b7e38d4ba1cc01e2e4f6087cfa46e26162975671cb325672085d323</cites><orcidid>0000-0001-6206-6767 ; 0000-0002-9452-5849 ; 0000-0002-1610-5259</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8036738/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC8036738/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,886,27928,27929,53795,53797</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33915826$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Baek, Seung-Hwa</creatorcontrib><creatorcontrib>Hwang, Sungbo</creatorcontrib><creatorcontrib>Park, Tamina</creatorcontrib><creatorcontrib>Kwon, Yoon-Ju</creatorcontrib><creatorcontrib>Cho, Myounglae</creatorcontrib><creatorcontrib>Park, Daeui</creatorcontrib><title>Evaluation of Selective COX-2 Inhibition and In Silico Study of Kuwanon Derivatives Isolated from Morus alba</title><title>International journal of molecular sciences</title><addtitle>INT J MOL SCI</addtitle><addtitle>Int J Mol Sci</addtitle><description>Six kuwanon derivatives (A/B/C/E/H/J) extracted from the roots of Morus alba L. were evaluated to determine their cyclooxygenase (COX)-1 and 2 inhibitory effects. Cyclooxygenase (COX) is known as the target enzyme of nonsteroidal anti-inflammatory drugs (NSAIDs), which are the most widely used therapeutic agents for pain and inflammation. Among six kuwanon derivatives, kuwanon A showed selective COX-2 inhibitory activity, almost equivalent to that of celecoxib, a known COX inhibitor. Kuwanon A showed high COX-2 inhibitory activity (IC50 = 14 mu M) and a selectivity index (SI) range of >7.1, comparable to celecoxib (SI > 6.3). To understand the mechanisms underlying this effect, we performed docking simulations, fragment molecular orbital (FMO) calculations, and pair interaction energy decomposition analysis (PIEDA) at the quantum-mechanical level. As a result, kuwanon A had the strongest interaction with Arg120 and Tyr355 at the gate of the COX active site (-7.044 kcal/mol) and with Val89 in the membrane-binding domain (-6.599 kcal/mol). In addition, kuwanon A closely bound to Val89, His90, and Ser119, which are residues at the entrance and exit routes of the COX active site (4.329 angstrom). FMO calculations and PIEDA well supported the COX-2 selective inhibitory action of kuwanon A. It showed that the simulation and modeling results and experimental evidence were consistent.</description><subject>Amino acids</subject><subject>Benzene Derivatives - isolation & purification</subject><subject>Benzene Derivatives - pharmacology</subject><subject>Binding sites</subject><subject>Biochemistry & Molecular Biology</subject><subject>Celecoxib</subject><subject>Chemical compounds</subject><subject>Chemistry</subject><subject>Chemistry, Multidisciplinary</subject><subject>Cyclooxygenase 2 Inhibitors - isolation & purification</subject><subject>cyclooxygenase inhibition assay</subject><subject>Cyclooxygenase-2</subject><subject>docking simulation</subject><subject>Energy</subject><subject>Entrances</subject><subject>Enzymes</subject><subject>Flavonoids - isolation & purification</subject><subject>Flavonoids - pharmacology</subject><subject>Inflammation</subject><subject>kuwanon A</subject><subject>Life Sciences & Biomedicine</subject><subject>Molecular Docking Simulation</subject><subject>Molecular orbitals</subject><subject>Morus - chemistry</subject><subject>Morus alba</subject><subject>Nonsteroidal anti-inflammatory drugs</subject><subject>Pharmacology</subject><subject>Physical Sciences</subject><subject>Plant Extracts - chemistry</subject><subject>quantum mechanics</subject><subject>Science & Technology</subject><subject>Selectivity</subject><issn>1422-0067</issn><issn>1661-6596</issn><issn>1422-0067</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>HGBXW</sourceid><sourceid>EIF</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNqNkk1v1DAQhi0EoqVw44wscYSAv2I7FyQUCqwo6mFB4mY5zqT1Khu3trNV_z3e3bLa3vDFH_O8rz2eQeg1JR84b8hHv1onxojism6eoFMqGKsIkerp0foEvUhpRQjjrG6eo5MipLVm8hSN5xs7zjb7MOEw4CWM4LLfAG4v_1QML6Zr3_ld1E592eKlH70LeJnn_n6r-DHf2amEv0D0G7uVJrxIYbQZejzEsMY_Q5wTtmNnX6Jngx0TvHqYz9Dvr-e_2u_VxeW3Rfv5onK1ELlqBioIcRZ0p4DrXnSWOkcoMBCDJFq5wQoJTFLJGlVLRV1XEpOKEV33nPEztNj79sGuzE30axvvTbDe7A5CvDI2Zu9GMHIQCqgqX9Mx4RizvGfcdbSRSgvV9MXr097rZu7W0DuYcrTjI9PHkclfm6uwMZpwqbguBm8fDGK4nSFlswpznEr-htVCy4YJxQv1fk-5GFKKMBxuoMRs62yO61zwN8evOsD_CluAd3vgDrowJOdhcnDASGkKriVpyHbQQuv_p1ufd_3ShnnK_C89CMOl</recordid><startdate>20210401</startdate><enddate>20210401</enddate><creator>Baek, Seung-Hwa</creator><creator>Hwang, Sungbo</creator><creator>Park, Tamina</creator><creator>Kwon, Yoon-Ju</creator><creator>Cho, Myounglae</creator><creator>Park, Daeui</creator><general>Mdpi</general><general>MDPI AG</general><general>MDPI</general><scope>BLEPL</scope><scope>DTL</scope><scope>HGBXW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7X7</scope><scope>7XB</scope><scope>88E</scope><scope>8FI</scope><scope>8FJ</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FYUFA</scope><scope>GHDGH</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>K9.</scope><scope>M0S</scope><scope>M1P</scope><scope>M2O</scope><scope>MBDVC</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0001-6206-6767</orcidid><orcidid>https://orcid.org/0000-0002-9452-5849</orcidid><orcidid>https://orcid.org/0000-0002-1610-5259</orcidid></search><sort><creationdate>20210401</creationdate><title>Evaluation of Selective COX-2 Inhibition and In Silico Study of Kuwanon Derivatives Isolated from Morus alba</title><author>Baek, Seung-Hwa ; Hwang, Sungbo ; Park, Tamina ; Kwon, Yoon-Ju ; Cho, Myounglae ; Park, Daeui</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c544t-9f1400cae8b7e38d4ba1cc01e2e4f6087cfa46e26162975671cb325672085d323</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Amino acids</topic><topic>Benzene Derivatives - isolation & purification</topic><topic>Benzene Derivatives - pharmacology</topic><topic>Binding sites</topic><topic>Biochemistry & Molecular Biology</topic><topic>Celecoxib</topic><topic>Chemical compounds</topic><topic>Chemistry</topic><topic>Chemistry, Multidisciplinary</topic><topic>Cyclooxygenase 2 Inhibitors - isolation & purification</topic><topic>cyclooxygenase inhibition assay</topic><topic>Cyclooxygenase-2</topic><topic>docking simulation</topic><topic>Energy</topic><topic>Entrances</topic><topic>Enzymes</topic><topic>Flavonoids - isolation & purification</topic><topic>Flavonoids - pharmacology</topic><topic>Inflammation</topic><topic>kuwanon A</topic><topic>Life Sciences & Biomedicine</topic><topic>Molecular Docking Simulation</topic><topic>Molecular orbitals</topic><topic>Morus - chemistry</topic><topic>Morus alba</topic><topic>Nonsteroidal anti-inflammatory drugs</topic><topic>Pharmacology</topic><topic>Physical Sciences</topic><topic>Plant Extracts - chemistry</topic><topic>quantum mechanics</topic><topic>Science & Technology</topic><topic>Selectivity</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Baek, Seung-Hwa</creatorcontrib><creatorcontrib>Hwang, Sungbo</creatorcontrib><creatorcontrib>Park, Tamina</creatorcontrib><creatorcontrib>Kwon, Yoon-Ju</creatorcontrib><creatorcontrib>Cho, Myounglae</creatorcontrib><creatorcontrib>Park, Daeui</creatorcontrib><collection>Web of Science Core Collection</collection><collection>Science Citation Index Expanded</collection><collection>Web of Science - Science Citation Index Expanded - 2021</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>Health & Medical Collection</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Medical Database (Alumni Edition)</collection><collection>Hospital Premium Collection</collection><collection>Hospital Premium Collection (Alumni Edition)</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>Proquest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Health Research Premium Collection</collection><collection>Health Research Premium Collection (Alumni)</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>ProQuest Health & Medical Complete (Alumni)</collection><collection>Health & Medical Collection (Alumni Edition)</collection><collection>Medical Database</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Access via ProQuest (Open Access)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>International journal of molecular sciences</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Baek, Seung-Hwa</au><au>Hwang, Sungbo</au><au>Park, Tamina</au><au>Kwon, Yoon-Ju</au><au>Cho, Myounglae</au><au>Park, Daeui</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Evaluation of Selective COX-2 Inhibition and In Silico Study of Kuwanon Derivatives Isolated from Morus alba</atitle><jtitle>International journal of molecular sciences</jtitle><stitle>INT J MOL SCI</stitle><addtitle>Int J Mol Sci</addtitle><date>2021-04-01</date><risdate>2021</risdate><volume>22</volume><issue>7</issue><spage>3659</spage><pages>3659-</pages><artnum>3659</artnum><issn>1422-0067</issn><issn>1661-6596</issn><eissn>1422-0067</eissn><abstract>Six kuwanon derivatives (A/B/C/E/H/J) extracted from the roots of Morus alba L. were evaluated to determine their cyclooxygenase (COX)-1 and 2 inhibitory effects. Cyclooxygenase (COX) is known as the target enzyme of nonsteroidal anti-inflammatory drugs (NSAIDs), which are the most widely used therapeutic agents for pain and inflammation. Among six kuwanon derivatives, kuwanon A showed selective COX-2 inhibitory activity, almost equivalent to that of celecoxib, a known COX inhibitor. Kuwanon A showed high COX-2 inhibitory activity (IC50 = 14 mu M) and a selectivity index (SI) range of >7.1, comparable to celecoxib (SI > 6.3). To understand the mechanisms underlying this effect, we performed docking simulations, fragment molecular orbital (FMO) calculations, and pair interaction energy decomposition analysis (PIEDA) at the quantum-mechanical level. As a result, kuwanon A had the strongest interaction with Arg120 and Tyr355 at the gate of the COX active site (-7.044 kcal/mol) and with Val89 in the membrane-binding domain (-6.599 kcal/mol). In addition, kuwanon A closely bound to Val89, His90, and Ser119, which are residues at the entrance and exit routes of the COX active site (4.329 angstrom). FMO calculations and PIEDA well supported the COX-2 selective inhibitory action of kuwanon A. It showed that the simulation and modeling results and experimental evidence were consistent.</abstract><cop>BASEL</cop><pub>Mdpi</pub><pmid>33915826</pmid><doi>10.3390/ijms22073659</doi><tpages>13</tpages><orcidid>https://orcid.org/0000-0001-6206-6767</orcidid><orcidid>https://orcid.org/0000-0002-9452-5849</orcidid><orcidid>https://orcid.org/0000-0002-1610-5259</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Amino acids Benzene Derivatives - isolation & purification Benzene Derivatives - pharmacology Binding sites Biochemistry & Molecular Biology Celecoxib Chemical compounds Chemistry Chemistry, Multidisciplinary Cyclooxygenase 2 Inhibitors - isolation & purification cyclooxygenase inhibition assay Cyclooxygenase-2 docking simulation Energy Entrances Enzymes Flavonoids - isolation & purification Flavonoids - pharmacology Inflammation kuwanon A Life Sciences & Biomedicine Molecular Docking Simulation Molecular orbitals Morus - chemistry Morus alba Nonsteroidal anti-inflammatory drugs Pharmacology Physical Sciences Plant Extracts - chemistry quantum mechanics Science & Technology Selectivity |
title | Evaluation of Selective COX-2 Inhibition and In Silico Study of Kuwanon Derivatives Isolated from Morus alba |
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