Role of miRNAs in Sigmoid Colon Cancer: A Search for Potential Biomarkers
The aberrant expression of microRNAs in known to play a crucial role in carcinogenesis. Here, we evaluated the miRNA expression profile of sigmoid colon cancer (SCC) compared to adjacent-to-tumor (ADJ) and sigmoid colon healthy (SCH) tissues obtained from colon biopsy extracted from Brazilian patien...
Gespeichert in:
Veröffentlicht in: | Cancers 2020-11, Vol.12 (11), p.3311 |
---|---|
Hauptverfasser: | , , , , , , , , , , , |
Format: | Artikel |
Sprache: | eng |
Schlagworte: | |
Online-Zugang: | Volltext |
Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
container_end_page | |
---|---|
container_issue | 11 |
container_start_page | 3311 |
container_title | Cancers |
container_volume | 12 |
creator | Marques, Diego Ferreira-Costa, Layse Raynara Ferreira-Costa, Lorenna Larissa Bezerra-Oliveira, Ana Beatriz Correa, Romualdo da Silva Ramos, Carlos Cesar de Oliveira Vinasco-Sandoval, Tatiana Lopes, Katia de Paiva Vialle, Ricardo Assunção Vidal, Amanda Ferreira Silbiger, Vivian Nogueira Ribeiro-dos-Santos, Ândrea |
description | The aberrant expression of microRNAs in known to play a crucial role in carcinogenesis. Here, we evaluated the miRNA expression profile of sigmoid colon cancer (SCC) compared to adjacent-to-tumor (ADJ) and sigmoid colon healthy (SCH) tissues obtained from colon biopsy extracted from Brazilian patients. Comparisons were performed between each group separately, considering as significant p-values < 0.05 and |Log2(Fold-Change)| > 2. We found 20 differentially expressed miRNAs (DEmiRNAs) in all comparisons, two of which were shared between SCC vs. ADJ and SCC vs. SCH. We used miRTarBase, and miRTargetLink to identify target-genes of the differentially expressed miRNAs, and DAVID and REACTOME databases for gene enrichment analysis. We also used TCGA and GTEx databases to build miRNA-gene regulatory networks and check for the reproducibility in our results. As findings, in addition to previously known miRNAs associated with colorectal cancer, we identified three potential novel biomarkers. We showed that the three types of colon tissue could be clearly distinguished using a panel composed by the 20 DEmiRNAs. Additionally, we found enriched pathways related to the carcinogenic process in which miRNA could be involved, indicating that adjacent-to-tumor tissues may be already altered and cannot be considered as healthy tissues. Overall, we expect that these findings may help in the search for biomarkers to prevent cancer progression or, at least, allow its early detection, however, more studies are needed to confirm our results. |
doi_str_mv | 10.3390/cancers12113311 |
format | Article |
fullrecord | <record><control><sourceid>gale_pubme</sourceid><recordid>TN_cdi_crossref_primary_10_3390_cancers12113311</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><galeid>A645023690</galeid><sourcerecordid>A645023690</sourcerecordid><originalsourceid>FETCH-LOGICAL-c398t-c3eb94f5573c7a20adc004ac496b16de6950614bcc9dd093556ea9bcaf5100253</originalsourceid><addsrcrecordid>eNpdkU1LAzEQhoMottSevQa8eKnNxyZpPAh18aNQVFo9h2w220Z3NzVpBf-9qS2izmFmYB7eeZkB4BSjC0olGhrdGhsiJhhTivEB6BIkyIBzmR3-6jugH-MrSpEowcUx6KRmRBhhXTCZ-dpCX8HGzR7GEboWzt2i8a6Eua99C_PvJZdwDOdWB7OElQ_wya9tu3a6htfONzq8JRsn4KjSdbT9fe2Bl9ub5_x-MH28m-Tj6cBQOVqnbAuZVYwJaoQmSJcGoUybTPIC89JyyRDHWWGMLEskKWPcalkYXTGMEGG0B652uqtN0djSJCNB12oVXDLyqbx26u-kdUu18B9KcCmkFEngfC8Q_PvGxrVqXDS2rnVr_SYqknEk0uEkTujZDl3o2irXVj4pmi2uxjxjiFAuUaKGO8oEH2Ow1Y8ZjNT2U-rfp-gX2S-Exw</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2460766991</pqid></control><display><type>article</type><title>Role of miRNAs in Sigmoid Colon Cancer: A Search for Potential Biomarkers</title><source>MDPI - Multidisciplinary Digital Publishing Institute</source><source>EZB-FREE-00999 freely available EZB journals</source><source>PubMed Central</source><source>PubMed Central Open Access</source><creator>Marques, Diego ; Ferreira-Costa, Layse Raynara ; Ferreira-Costa, Lorenna Larissa ; Bezerra-Oliveira, Ana Beatriz ; Correa, Romualdo da Silva ; Ramos, Carlos Cesar de Oliveira ; Vinasco-Sandoval, Tatiana ; Lopes, Katia de Paiva ; Vialle, Ricardo Assunção ; Vidal, Amanda Ferreira ; Silbiger, Vivian Nogueira ; Ribeiro-dos-Santos, Ândrea</creator><creatorcontrib>Marques, Diego ; Ferreira-Costa, Layse Raynara ; Ferreira-Costa, Lorenna Larissa ; Bezerra-Oliveira, Ana Beatriz ; Correa, Romualdo da Silva ; Ramos, Carlos Cesar de Oliveira ; Vinasco-Sandoval, Tatiana ; Lopes, Katia de Paiva ; Vialle, Ricardo Assunção ; Vidal, Amanda Ferreira ; Silbiger, Vivian Nogueira ; Ribeiro-dos-Santos, Ândrea</creatorcontrib><description>The aberrant expression of microRNAs in known to play a crucial role in carcinogenesis. Here, we evaluated the miRNA expression profile of sigmoid colon cancer (SCC) compared to adjacent-to-tumor (ADJ) and sigmoid colon healthy (SCH) tissues obtained from colon biopsy extracted from Brazilian patients. Comparisons were performed between each group separately, considering as significant p-values < 0.05 and |Log2(Fold-Change)| > 2. We found 20 differentially expressed miRNAs (DEmiRNAs) in all comparisons, two of which were shared between SCC vs. ADJ and SCC vs. SCH. We used miRTarBase, and miRTargetLink to identify target-genes of the differentially expressed miRNAs, and DAVID and REACTOME databases for gene enrichment analysis. We also used TCGA and GTEx databases to build miRNA-gene regulatory networks and check for the reproducibility in our results. As findings, in addition to previously known miRNAs associated with colorectal cancer, we identified three potential novel biomarkers. We showed that the three types of colon tissue could be clearly distinguished using a panel composed by the 20 DEmiRNAs. Additionally, we found enriched pathways related to the carcinogenic process in which miRNA could be involved, indicating that adjacent-to-tumor tissues may be already altered and cannot be considered as healthy tissues. Overall, we expect that these findings may help in the search for biomarkers to prevent cancer progression or, at least, allow its early detection, however, more studies are needed to confirm our results.</description><identifier>ISSN: 2072-6694</identifier><identifier>EISSN: 2072-6694</identifier><identifier>DOI: 10.3390/cancers12113311</identifier><identifier>PMID: 33182525</identifier><language>eng</language><publisher>MDPI AG</publisher><subject>Biological markers ; Colon cancer ; Genetic aspects ; Health aspects ; MicroRNA</subject><ispartof>Cancers, 2020-11, Vol.12 (11), p.3311</ispartof><rights>COPYRIGHT 2020 MDPI AG</rights><rights>2020 by the authors. 2020</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c398t-c3eb94f5573c7a20adc004ac496b16de6950614bcc9dd093556ea9bcaf5100253</citedby><cites>FETCH-LOGICAL-c398t-c3eb94f5573c7a20adc004ac496b16de6950614bcc9dd093556ea9bcaf5100253</cites><orcidid>0000-0003-3311-4197 ; 0000-0002-0189-0573 ; 0000-0002-9252-0278 ; 0000-0002-7446-6087 ; 0000-0001-7001-1483 ; 0000-0002-0240-0126 ; 0000-0003-4180-9925</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7697997/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7697997/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,881,27901,27902,53766,53768</link.rule.ids></links><search><creatorcontrib>Marques, Diego</creatorcontrib><creatorcontrib>Ferreira-Costa, Layse Raynara</creatorcontrib><creatorcontrib>Ferreira-Costa, Lorenna Larissa</creatorcontrib><creatorcontrib>Bezerra-Oliveira, Ana Beatriz</creatorcontrib><creatorcontrib>Correa, Romualdo da Silva</creatorcontrib><creatorcontrib>Ramos, Carlos Cesar de Oliveira</creatorcontrib><creatorcontrib>Vinasco-Sandoval, Tatiana</creatorcontrib><creatorcontrib>Lopes, Katia de Paiva</creatorcontrib><creatorcontrib>Vialle, Ricardo Assunção</creatorcontrib><creatorcontrib>Vidal, Amanda Ferreira</creatorcontrib><creatorcontrib>Silbiger, Vivian Nogueira</creatorcontrib><creatorcontrib>Ribeiro-dos-Santos, Ândrea</creatorcontrib><title>Role of miRNAs in Sigmoid Colon Cancer: A Search for Potential Biomarkers</title><title>Cancers</title><description>The aberrant expression of microRNAs in known to play a crucial role in carcinogenesis. Here, we evaluated the miRNA expression profile of sigmoid colon cancer (SCC) compared to adjacent-to-tumor (ADJ) and sigmoid colon healthy (SCH) tissues obtained from colon biopsy extracted from Brazilian patients. Comparisons were performed between each group separately, considering as significant p-values < 0.05 and |Log2(Fold-Change)| > 2. We found 20 differentially expressed miRNAs (DEmiRNAs) in all comparisons, two of which were shared between SCC vs. ADJ and SCC vs. SCH. We used miRTarBase, and miRTargetLink to identify target-genes of the differentially expressed miRNAs, and DAVID and REACTOME databases for gene enrichment analysis. We also used TCGA and GTEx databases to build miRNA-gene regulatory networks and check for the reproducibility in our results. As findings, in addition to previously known miRNAs associated with colorectal cancer, we identified three potential novel biomarkers. We showed that the three types of colon tissue could be clearly distinguished using a panel composed by the 20 DEmiRNAs. Additionally, we found enriched pathways related to the carcinogenic process in which miRNA could be involved, indicating that adjacent-to-tumor tissues may be already altered and cannot be considered as healthy tissues. Overall, we expect that these findings may help in the search for biomarkers to prevent cancer progression or, at least, allow its early detection, however, more studies are needed to confirm our results.</description><subject>Biological markers</subject><subject>Colon cancer</subject><subject>Genetic aspects</subject><subject>Health aspects</subject><subject>MicroRNA</subject><issn>2072-6694</issn><issn>2072-6694</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2020</creationdate><recordtype>article</recordtype><recordid>eNpdkU1LAzEQhoMottSevQa8eKnNxyZpPAh18aNQVFo9h2w220Z3NzVpBf-9qS2izmFmYB7eeZkB4BSjC0olGhrdGhsiJhhTivEB6BIkyIBzmR3-6jugH-MrSpEowcUx6KRmRBhhXTCZ-dpCX8HGzR7GEboWzt2i8a6Eua99C_PvJZdwDOdWB7OElQ_wya9tu3a6htfONzq8JRsn4KjSdbT9fe2Bl9ub5_x-MH28m-Tj6cBQOVqnbAuZVYwJaoQmSJcGoUybTPIC89JyyRDHWWGMLEskKWPcalkYXTGMEGG0B652uqtN0djSJCNB12oVXDLyqbx26u-kdUu18B9KcCmkFEngfC8Q_PvGxrVqXDS2rnVr_SYqknEk0uEkTujZDl3o2irXVj4pmi2uxjxjiFAuUaKGO8oEH2Ow1Y8ZjNT2U-rfp-gX2S-Exw</recordid><startdate>20201110</startdate><enddate>20201110</enddate><creator>Marques, Diego</creator><creator>Ferreira-Costa, Layse Raynara</creator><creator>Ferreira-Costa, Lorenna Larissa</creator><creator>Bezerra-Oliveira, Ana Beatriz</creator><creator>Correa, Romualdo da Silva</creator><creator>Ramos, Carlos Cesar de Oliveira</creator><creator>Vinasco-Sandoval, Tatiana</creator><creator>Lopes, Katia de Paiva</creator><creator>Vialle, Ricardo Assunção</creator><creator>Vidal, Amanda Ferreira</creator><creator>Silbiger, Vivian Nogueira</creator><creator>Ribeiro-dos-Santos, Ândrea</creator><general>MDPI AG</general><general>MDPI</general><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope><orcidid>https://orcid.org/0000-0003-3311-4197</orcidid><orcidid>https://orcid.org/0000-0002-0189-0573</orcidid><orcidid>https://orcid.org/0000-0002-9252-0278</orcidid><orcidid>https://orcid.org/0000-0002-7446-6087</orcidid><orcidid>https://orcid.org/0000-0001-7001-1483</orcidid><orcidid>https://orcid.org/0000-0002-0240-0126</orcidid><orcidid>https://orcid.org/0000-0003-4180-9925</orcidid></search><sort><creationdate>20201110</creationdate><title>Role of miRNAs in Sigmoid Colon Cancer: A Search for Potential Biomarkers</title><author>Marques, Diego ; Ferreira-Costa, Layse Raynara ; Ferreira-Costa, Lorenna Larissa ; Bezerra-Oliveira, Ana Beatriz ; Correa, Romualdo da Silva ; Ramos, Carlos Cesar de Oliveira ; Vinasco-Sandoval, Tatiana ; Lopes, Katia de Paiva ; Vialle, Ricardo Assunção ; Vidal, Amanda Ferreira ; Silbiger, Vivian Nogueira ; Ribeiro-dos-Santos, Ândrea</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c398t-c3eb94f5573c7a20adc004ac496b16de6950614bcc9dd093556ea9bcaf5100253</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2020</creationdate><topic>Biological markers</topic><topic>Colon cancer</topic><topic>Genetic aspects</topic><topic>Health aspects</topic><topic>MicroRNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Marques, Diego</creatorcontrib><creatorcontrib>Ferreira-Costa, Layse Raynara</creatorcontrib><creatorcontrib>Ferreira-Costa, Lorenna Larissa</creatorcontrib><creatorcontrib>Bezerra-Oliveira, Ana Beatriz</creatorcontrib><creatorcontrib>Correa, Romualdo da Silva</creatorcontrib><creatorcontrib>Ramos, Carlos Cesar de Oliveira</creatorcontrib><creatorcontrib>Vinasco-Sandoval, Tatiana</creatorcontrib><creatorcontrib>Lopes, Katia de Paiva</creatorcontrib><creatorcontrib>Vialle, Ricardo Assunção</creatorcontrib><creatorcontrib>Vidal, Amanda Ferreira</creatorcontrib><creatorcontrib>Silbiger, Vivian Nogueira</creatorcontrib><creatorcontrib>Ribeiro-dos-Santos, Ândrea</creatorcontrib><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Cancers</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Marques, Diego</au><au>Ferreira-Costa, Layse Raynara</au><au>Ferreira-Costa, Lorenna Larissa</au><au>Bezerra-Oliveira, Ana Beatriz</au><au>Correa, Romualdo da Silva</au><au>Ramos, Carlos Cesar de Oliveira</au><au>Vinasco-Sandoval, Tatiana</au><au>Lopes, Katia de Paiva</au><au>Vialle, Ricardo Assunção</au><au>Vidal, Amanda Ferreira</au><au>Silbiger, Vivian Nogueira</au><au>Ribeiro-dos-Santos, Ândrea</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Role of miRNAs in Sigmoid Colon Cancer: A Search for Potential Biomarkers</atitle><jtitle>Cancers</jtitle><date>2020-11-10</date><risdate>2020</risdate><volume>12</volume><issue>11</issue><spage>3311</spage><pages>3311-</pages><issn>2072-6694</issn><eissn>2072-6694</eissn><abstract>The aberrant expression of microRNAs in known to play a crucial role in carcinogenesis. Here, we evaluated the miRNA expression profile of sigmoid colon cancer (SCC) compared to adjacent-to-tumor (ADJ) and sigmoid colon healthy (SCH) tissues obtained from colon biopsy extracted from Brazilian patients. Comparisons were performed between each group separately, considering as significant p-values < 0.05 and |Log2(Fold-Change)| > 2. We found 20 differentially expressed miRNAs (DEmiRNAs) in all comparisons, two of which were shared between SCC vs. ADJ and SCC vs. SCH. We used miRTarBase, and miRTargetLink to identify target-genes of the differentially expressed miRNAs, and DAVID and REACTOME databases for gene enrichment analysis. We also used TCGA and GTEx databases to build miRNA-gene regulatory networks and check for the reproducibility in our results. As findings, in addition to previously known miRNAs associated with colorectal cancer, we identified three potential novel biomarkers. We showed that the three types of colon tissue could be clearly distinguished using a panel composed by the 20 DEmiRNAs. Additionally, we found enriched pathways related to the carcinogenic process in which miRNA could be involved, indicating that adjacent-to-tumor tissues may be already altered and cannot be considered as healthy tissues. Overall, we expect that these findings may help in the search for biomarkers to prevent cancer progression or, at least, allow its early detection, however, more studies are needed to confirm our results.</abstract><pub>MDPI AG</pub><pmid>33182525</pmid><doi>10.3390/cancers12113311</doi><orcidid>https://orcid.org/0000-0003-3311-4197</orcidid><orcidid>https://orcid.org/0000-0002-0189-0573</orcidid><orcidid>https://orcid.org/0000-0002-9252-0278</orcidid><orcidid>https://orcid.org/0000-0002-7446-6087</orcidid><orcidid>https://orcid.org/0000-0001-7001-1483</orcidid><orcidid>https://orcid.org/0000-0002-0240-0126</orcidid><orcidid>https://orcid.org/0000-0003-4180-9925</orcidid><oa>free_for_read</oa></addata></record> |
fulltext | fulltext |
identifier | ISSN: 2072-6694 |
ispartof | Cancers, 2020-11, Vol.12 (11), p.3311 |
issn | 2072-6694 2072-6694 |
language | eng |
recordid | cdi_crossref_primary_10_3390_cancers12113311 |
source | MDPI - Multidisciplinary Digital Publishing Institute; EZB-FREE-00999 freely available EZB journals; PubMed Central; PubMed Central Open Access |
subjects | Biological markers Colon cancer Genetic aspects Health aspects MicroRNA |
title | Role of miRNAs in Sigmoid Colon Cancer: A Search for Potential Biomarkers |
url | https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-18T21%3A09%3A58IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-gale_pubme&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Role%20of%20miRNAs%20in%20Sigmoid%20Colon%20Cancer:%20A%20Search%20for%20Potential%20Biomarkers&rft.jtitle=Cancers&rft.au=Marques,%20Diego&rft.date=2020-11-10&rft.volume=12&rft.issue=11&rft.spage=3311&rft.pages=3311-&rft.issn=2072-6694&rft.eissn=2072-6694&rft_id=info:doi/10.3390/cancers12113311&rft_dat=%3Cgale_pubme%3EA645023690%3C/gale_pubme%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2460766991&rft_id=info:pmid/33182525&rft_galeid=A645023690&rfr_iscdi=true |