An Integrative Model of Carbon and Nitrogen Metabolism in a Common Deep-Sea Sponge (Geodia barretti)
Deep-sea sponges and their microbial symbionts transform various forms of carbon (C) and nitrogen (N) via several metabolic pathways, which, for a large part, are poorly quantified. Previous flux studies on the common deep-sea sponge Geodia barretti consistently revealed net consumption of dissolved...
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creator | de Kluijver, Anna Bart, Martijn C. van Oevelen, Dick de Goeij, Jasper M. Leys, Sally P. Maier, Sandra R. Maldonado, Manuel Soetaert, Karline Verbiest, Sander Middelburg, Jack J. |
description | Deep-sea sponges and their microbial symbionts transform various forms of carbon (C) and nitrogen (N) via several metabolic pathways, which, for a large part, are poorly quantified. Previous flux studies on the common deep-sea sponge Geodia barretti consistently revealed net consumption of dissolved organic carbon (DOC) and oxygen (O-2) and net release of nitrate (NO3- ). Here we present a biogeochemical metabolic network model that, for the first time, quantifies C and N fluxes within the sponge holobiont in a consistent manner, including many poorly constrained metabolic conversions. Using two datasets covering a range of individual G. barretti sizes (10-3,500 ml), we found that the variability in metabolic rates partially resulted from body size as O-2 uptake allometrically scales with sponge volume. Our model analysis confirmed that dissolved organic matter (DOM), with an estimated C:N ratio of 7.7 +/- 1.4, is the main energy source of G. barretti. DOM is primarily used for aerobic respiration, then for dissimilatory NO3- reduction to ammonium (NH4+) (DNRA), and, lastly, for denitrification. Dissolved organic carbon (DOC) production efficiencies (production/assimilation) were estimated as 24 +/- 8% (larger individuals) and 31 +/- 9% (smaller individuals), so most DOC was respired to carbon dioxide (CO2), which was released in a net ratio of 0.77- 0.81 to O-2 consumption. Internally produced NH4+ from cellular excretion and DNRA fueled nitrification. Nitrification-associated chemoautotrophic production contributed 5.1-6.7 +/- 3.0% to total sponge production. While overall metabolic patterns were rather independent of sponge size, (volume-)specific rates were lower in larger sponges compared to smaller individuals. Specific biomass production rates were 0.16% day(-1) in smaller compared to 0.067% day(-1) in larger G. barretti as expected for slow growing deep-sea organisms. Collectively, our approach shows that metabolic modeling of hard-to-reach, deep-water sponges can be used to predict community-based biogeochemical fluxes and sponge production that will facilitate further investigations on the functional integration and the ecological significance of sponge aggregations in deep-sea ecosystems. |
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Previous flux studies on the common deep-sea sponge Geodia barretti consistently revealed net consumption of dissolved organic carbon (DOC) and oxygen (O-2) and net release of nitrate (NO3- ). Here we present a biogeochemical metabolic network model that, for the first time, quantifies C and N fluxes within the sponge holobiont in a consistent manner, including many poorly constrained metabolic conversions. Using two datasets covering a range of individual G. barretti sizes (10-3,500 ml), we found that the variability in metabolic rates partially resulted from body size as O-2 uptake allometrically scales with sponge volume. Our model analysis confirmed that dissolved organic matter (DOM), with an estimated C:N ratio of 7.7 +/- 1.4, is the main energy source of G. barretti. DOM is primarily used for aerobic respiration, then for dissimilatory NO3- reduction to ammonium (NH4+) (DNRA), and, lastly, for denitrification. Dissolved organic carbon (DOC) production efficiencies (production/assimilation) were estimated as 24 +/- 8% (larger individuals) and 31 +/- 9% (smaller individuals), so most DOC was respired to carbon dioxide (CO2), which was released in a net ratio of 0.77- 0.81 to O-2 consumption. Internally produced NH4+ from cellular excretion and DNRA fueled nitrification. Nitrification-associated chemoautotrophic production contributed 5.1-6.7 +/- 3.0% to total sponge production. While overall metabolic patterns were rather independent of sponge size, (volume-)specific rates were lower in larger sponges compared to smaller individuals. Specific biomass production rates were 0.16% day(-1) in smaller compared to 0.067% day(-1) in larger G. barretti as expected for slow growing deep-sea organisms. Collectively, our approach shows that metabolic modeling of hard-to-reach, deep-water sponges can be used to predict community-based biogeochemical fluxes and sponge production that will facilitate further investigations on the functional integration and the ecological significance of sponge aggregations in deep-sea ecosystems.</description><identifier>ISSN: 2296-7745</identifier><identifier>EISSN: 2296-7745</identifier><identifier>DOI: 10.3389/fmars.2020.596251</identifier><language>eng</language><publisher>LAUSANNE: Frontiers Media Sa</publisher><subject>Aerobic respiration ; allometry ; Biogeochemistry ; Body size ; Carbon ; Carbon dioxide ; chemoautotrophy ; Deep sea ; Deep water ; Denitrification ; Dissolved organic carbon ; Dissolved organic matter ; Ecological aggregations ; Ecosystem approach to fisheries ; Efficiency ; Environmental Sciences ; Environmental Sciences & Ecology ; Excretion ; Foreign exchange rates ; Geodia barretti ; Life Sciences & Biomedicine ; Marine & Freshwater Biology ; metabolic network model ; Metabolic networks ; Metabolic pathways ; Metabolic rate ; Metabolism ; Mineralization ; Nitrification ; Nitrogen ; Oxygen consumption ; Oxygen uptake ; production ; Science & Technology ; sponge holobiont metabolism ; Sponges ; Symbionts ; Uptake</subject><ispartof>Frontiers in Marine Science, 2021-01, Vol.7, Article 596251</ispartof><rights>2021. This work is licensed under http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>true</woscitedreferencessubscribed><woscitedreferencescount>12</woscitedreferencescount><woscitedreferencesoriginalsourcerecordid>wos000612369600001</woscitedreferencesoriginalsourcerecordid><citedby>FETCH-LOGICAL-c382t-3803b90f9f12cb239fe9f18c424aaeac5a16424a2d3caabf7c01f579a8579b953</citedby><cites>FETCH-LOGICAL-c382t-3803b90f9f12cb239fe9f18c424aaeac5a16424a2d3caabf7c01f579a8579b953</cites><orcidid>0000-0003-3601-9072 ; 0000-0002-7447-4212 ; 0000-0001-8288-7466</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,865,2103,2115,27929,27930,39263</link.rule.ids></links><search><creatorcontrib>de Kluijver, Anna</creatorcontrib><creatorcontrib>Bart, Martijn C.</creatorcontrib><creatorcontrib>van Oevelen, Dick</creatorcontrib><creatorcontrib>de Goeij, Jasper M.</creatorcontrib><creatorcontrib>Leys, Sally P.</creatorcontrib><creatorcontrib>Maier, Sandra R.</creatorcontrib><creatorcontrib>Maldonado, Manuel</creatorcontrib><creatorcontrib>Soetaert, Karline</creatorcontrib><creatorcontrib>Verbiest, Sander</creatorcontrib><creatorcontrib>Middelburg, Jack J.</creatorcontrib><title>An Integrative Model of Carbon and Nitrogen Metabolism in a Common Deep-Sea Sponge (Geodia barretti)</title><title>Frontiers in Marine Science</title><addtitle>FRONT MAR SCI</addtitle><description>Deep-sea sponges and their microbial symbionts transform various forms of carbon (C) and nitrogen (N) via several metabolic pathways, which, for a large part, are poorly quantified. Previous flux studies on the common deep-sea sponge Geodia barretti consistently revealed net consumption of dissolved organic carbon (DOC) and oxygen (O-2) and net release of nitrate (NO3- ). Here we present a biogeochemical metabolic network model that, for the first time, quantifies C and N fluxes within the sponge holobiont in a consistent manner, including many poorly constrained metabolic conversions. Using two datasets covering a range of individual G. barretti sizes (10-3,500 ml), we found that the variability in metabolic rates partially resulted from body size as O-2 uptake allometrically scales with sponge volume. Our model analysis confirmed that dissolved organic matter (DOM), with an estimated C:N ratio of 7.7 +/- 1.4, is the main energy source of G. barretti. DOM is primarily used for aerobic respiration, then for dissimilatory NO3- reduction to ammonium (NH4+) (DNRA), and, lastly, for denitrification. Dissolved organic carbon (DOC) production efficiencies (production/assimilation) were estimated as 24 +/- 8% (larger individuals) and 31 +/- 9% (smaller individuals), so most DOC was respired to carbon dioxide (CO2), which was released in a net ratio of 0.77- 0.81 to O-2 consumption. Internally produced NH4+ from cellular excretion and DNRA fueled nitrification. Nitrification-associated chemoautotrophic production contributed 5.1-6.7 +/- 3.0% to total sponge production. While overall metabolic patterns were rather independent of sponge size, (volume-)specific rates were lower in larger sponges compared to smaller individuals. Specific biomass production rates were 0.16% day(-1) in smaller compared to 0.067% day(-1) in larger G. barretti as expected for slow growing deep-sea organisms. Collectively, our approach shows that metabolic modeling of hard-to-reach, deep-water sponges can be used to predict community-based biogeochemical fluxes and sponge production that will facilitate further investigations on the functional integration and the ecological significance of sponge aggregations in deep-sea ecosystems.</description><subject>Aerobic respiration</subject><subject>allometry</subject><subject>Biogeochemistry</subject><subject>Body size</subject><subject>Carbon</subject><subject>Carbon dioxide</subject><subject>chemoautotrophy</subject><subject>Deep sea</subject><subject>Deep water</subject><subject>Denitrification</subject><subject>Dissolved organic carbon</subject><subject>Dissolved organic matter</subject><subject>Ecological aggregations</subject><subject>Ecosystem approach to fisheries</subject><subject>Efficiency</subject><subject>Environmental Sciences</subject><subject>Environmental Sciences & Ecology</subject><subject>Excretion</subject><subject>Foreign 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SCI</stitle><date>2021-01-18</date><risdate>2021</risdate><volume>7</volume><artnum>596251</artnum><issn>2296-7745</issn><eissn>2296-7745</eissn><abstract>Deep-sea sponges and their microbial symbionts transform various forms of carbon (C) and nitrogen (N) via several metabolic pathways, which, for a large part, are poorly quantified. Previous flux studies on the common deep-sea sponge Geodia barretti consistently revealed net consumption of dissolved organic carbon (DOC) and oxygen (O-2) and net release of nitrate (NO3- ). Here we present a biogeochemical metabolic network model that, for the first time, quantifies C and N fluxes within the sponge holobiont in a consistent manner, including many poorly constrained metabolic conversions. Using two datasets covering a range of individual G. barretti sizes (10-3,500 ml), we found that the variability in metabolic rates partially resulted from body size as O-2 uptake allometrically scales with sponge volume. Our model analysis confirmed that dissolved organic matter (DOM), with an estimated C:N ratio of 7.7 +/- 1.4, is the main energy source of G. barretti. DOM is primarily used for aerobic respiration, then for dissimilatory NO3- reduction to ammonium (NH4+) (DNRA), and, lastly, for denitrification. Dissolved organic carbon (DOC) production efficiencies (production/assimilation) were estimated as 24 +/- 8% (larger individuals) and 31 +/- 9% (smaller individuals), so most DOC was respired to carbon dioxide (CO2), which was released in a net ratio of 0.77- 0.81 to O-2 consumption. Internally produced NH4+ from cellular excretion and DNRA fueled nitrification. Nitrification-associated chemoautotrophic production contributed 5.1-6.7 +/- 3.0% to total sponge production. While overall metabolic patterns were rather independent of sponge size, (volume-)specific rates were lower in larger sponges compared to smaller individuals. Specific biomass production rates were 0.16% day(-1) in smaller compared to 0.067% day(-1) in larger G. barretti as expected for slow growing deep-sea organisms. Collectively, our approach shows that metabolic modeling of hard-to-reach, deep-water sponges can be used to predict community-based biogeochemical fluxes and sponge production that will facilitate further investigations on the functional integration and the ecological significance of sponge aggregations in deep-sea ecosystems.</abstract><cop>LAUSANNE</cop><pub>Frontiers Media Sa</pub><doi>10.3389/fmars.2020.596251</doi><tpages>18</tpages><orcidid>https://orcid.org/0000-0003-3601-9072</orcidid><orcidid>https://orcid.org/0000-0002-7447-4212</orcidid><orcidid>https://orcid.org/0000-0001-8288-7466</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | Aerobic respiration allometry Biogeochemistry Body size Carbon Carbon dioxide chemoautotrophy Deep sea Deep water Denitrification Dissolved organic carbon Dissolved organic matter Ecological aggregations Ecosystem approach to fisheries Efficiency Environmental Sciences Environmental Sciences & Ecology Excretion Foreign exchange rates Geodia barretti Life Sciences & Biomedicine Marine & Freshwater Biology metabolic network model Metabolic networks Metabolic pathways Metabolic rate Metabolism Mineralization Nitrification Nitrogen Oxygen consumption Oxygen uptake production Science & Technology sponge holobiont metabolism Sponges Symbionts Uptake |
title | An Integrative Model of Carbon and Nitrogen Metabolism in a Common Deep-Sea Sponge (Geodia barretti) |
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