Genome Annotation of Novel K1 Subcluster Mycobacteriophage Blizzard

The evolution of antimicrobial resistant pathogens constitutes a significant global public health threat. Combined with the lack of incentive for pharmaceutical companies to invest in developing new antibiotics, it is clear alternative treatments are needed. Bacteriophages present one possible avenu...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:McGill Science undergraduate research journal 2022-04, Vol.17 (1), p.23-29
Hauptverfasser: Brouillard-Galipeau, Morgane, Chau, Bao-An, Cyr, Jamie, Intrevado, Rafael, Kim, Sunu, Koger-Pease, Cal, Lapshina, Elizabeth, Mircescu, Alexandra, Serrador, Daniella, Slattery, Michael, Vonniessen, Benjamin, Shamash, Michael, Chahal, Jasmin
Format: Artikel
Sprache:eng
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 29
container_issue 1
container_start_page 23
container_title McGill Science undergraduate research journal
container_volume 17
creator Brouillard-Galipeau, Morgane
Chau, Bao-An
Cyr, Jamie
Intrevado, Rafael
Kim, Sunu
Koger-Pease, Cal
Lapshina, Elizabeth
Mircescu, Alexandra
Serrador, Daniella
Slattery, Michael
Vonniessen, Benjamin
Shamash, Michael
Chahal, Jasmin
description The evolution of antimicrobial resistant pathogens constitutes a significant global public health threat. Combined with the lack of incentive for pharmaceutical companies to invest in developing new antibiotics, it is clear alternative treatments are needed. Bacteriophages present one possible avenue as they harness the diversity and specificity of a microorganism that has coevolved with bacteria. However, little is known about these bacterial viruses. The SEA-PHAGES program was designed to identify and characterize novel bacteriophages and their associated gene functions. Herein, we report the genome annotation of one such novel phage: Mycobacteriophage Blizzard (GenBank accession number MW712733). Blizzard’s gene content was functionally annotated using bioinformatic tools including DNA Master, Phamerator, and NCBI BLAST, to call start sites as well as predict gene function. Overall, 96 genes were identified, including a tRNA and a translational frameshift, using highly similar reference phages BEEST, Belladonna, and CREW. From the 96 genes identified, 46 were functionally annotated. The remaining 50 genes have unknown functions due to the lack of significant matches in the databases. Our results demonstrate a novel annotated phage, whose genome serves to expand the understanding of phage biology and potential implications as alternative treatment to antibiotics.
doi_str_mv 10.26443/msurj.v17i1.173
format Article
fullrecord <record><control><sourceid>crossref</sourceid><recordid>TN_cdi_crossref_primary_10_26443_msurj_v17i1_173</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_26443_msurj_v17i1_173</sourcerecordid><originalsourceid>FETCH-LOGICAL-c833-29e71af4918c9447b7187debef40d7da016ae2227fdf425a0a07e2df3eabe0463</originalsourceid><addsrcrecordid>eNo9kL1OwzAYRS0EElXpzugXSPBf4mQsEZSKAgPdLcf-DKmSuLKTSu3TEwXEXe6Zrq4OQveUpCwXgj90cQyH9ERlQ1Mq-RVaUEmLhMiCX_-zzG7RKsYDmcKpyGS-QNUGet8BXve9H_TQ-B57h9_9CVr8SvHnWJt2jAME_HY2vtZmwsYfv_UX4Me2uVx0sHfoxuk2wuqvl2j__LSvXpLdx2ZbrXeJKThPWAmSaidKWphSCFlPp6SFGpwgVlpNaK6BMSaddYJlmmgigVnHQddARM6XiPzOmuBjDODUMTSdDmdFiZo1qFmDmjWoSQP_AeL5UvM</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Genome Annotation of Novel K1 Subcluster Mycobacteriophage Blizzard</title><source>EZB-FREE-00999 freely available EZB journals</source><source>Alma/SFX Local Collection</source><source>Free Full-Text Journals in Chemistry</source><creator>Brouillard-Galipeau, Morgane ; Chau, Bao-An ; Cyr, Jamie ; Intrevado, Rafael ; Kim, Sunu ; Koger-Pease, Cal ; Lapshina, Elizabeth ; Mircescu, Alexandra ; Serrador, Daniella ; Slattery, Michael ; Vonniessen, Benjamin ; Shamash, Michael ; Chahal, Jasmin</creator><creatorcontrib>Brouillard-Galipeau, Morgane ; Chau, Bao-An ; Cyr, Jamie ; Intrevado, Rafael ; Kim, Sunu ; Koger-Pease, Cal ; Lapshina, Elizabeth ; Mircescu, Alexandra ; Serrador, Daniella ; Slattery, Michael ; Vonniessen, Benjamin ; Shamash, Michael ; Chahal, Jasmin</creatorcontrib><description>The evolution of antimicrobial resistant pathogens constitutes a significant global public health threat. Combined with the lack of incentive for pharmaceutical companies to invest in developing new antibiotics, it is clear alternative treatments are needed. Bacteriophages present one possible avenue as they harness the diversity and specificity of a microorganism that has coevolved with bacteria. However, little is known about these bacterial viruses. The SEA-PHAGES program was designed to identify and characterize novel bacteriophages and their associated gene functions. Herein, we report the genome annotation of one such novel phage: Mycobacteriophage Blizzard (GenBank accession number MW712733). Blizzard’s gene content was functionally annotated using bioinformatic tools including DNA Master, Phamerator, and NCBI BLAST, to call start sites as well as predict gene function. Overall, 96 genes were identified, including a tRNA and a translational frameshift, using highly similar reference phages BEEST, Belladonna, and CREW. From the 96 genes identified, 46 were functionally annotated. The remaining 50 genes have unknown functions due to the lack of significant matches in the databases. Our results demonstrate a novel annotated phage, whose genome serves to expand the understanding of phage biology and potential implications as alternative treatment to antibiotics.</description><identifier>ISSN: 1718-0775</identifier><identifier>EISSN: 1718-0783</identifier><identifier>DOI: 10.26443/msurj.v17i1.173</identifier><language>eng</language><ispartof>McGill Science undergraduate research journal, 2022-04, Vol.17 (1), p.23-29</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,780,784,27924,27925</link.rule.ids></links><search><creatorcontrib>Brouillard-Galipeau, Morgane</creatorcontrib><creatorcontrib>Chau, Bao-An</creatorcontrib><creatorcontrib>Cyr, Jamie</creatorcontrib><creatorcontrib>Intrevado, Rafael</creatorcontrib><creatorcontrib>Kim, Sunu</creatorcontrib><creatorcontrib>Koger-Pease, Cal</creatorcontrib><creatorcontrib>Lapshina, Elizabeth</creatorcontrib><creatorcontrib>Mircescu, Alexandra</creatorcontrib><creatorcontrib>Serrador, Daniella</creatorcontrib><creatorcontrib>Slattery, Michael</creatorcontrib><creatorcontrib>Vonniessen, Benjamin</creatorcontrib><creatorcontrib>Shamash, Michael</creatorcontrib><creatorcontrib>Chahal, Jasmin</creatorcontrib><title>Genome Annotation of Novel K1 Subcluster Mycobacteriophage Blizzard</title><title>McGill Science undergraduate research journal</title><description>The evolution of antimicrobial resistant pathogens constitutes a significant global public health threat. Combined with the lack of incentive for pharmaceutical companies to invest in developing new antibiotics, it is clear alternative treatments are needed. Bacteriophages present one possible avenue as they harness the diversity and specificity of a microorganism that has coevolved with bacteria. However, little is known about these bacterial viruses. The SEA-PHAGES program was designed to identify and characterize novel bacteriophages and their associated gene functions. Herein, we report the genome annotation of one such novel phage: Mycobacteriophage Blizzard (GenBank accession number MW712733). Blizzard’s gene content was functionally annotated using bioinformatic tools including DNA Master, Phamerator, and NCBI BLAST, to call start sites as well as predict gene function. Overall, 96 genes were identified, including a tRNA and a translational frameshift, using highly similar reference phages BEEST, Belladonna, and CREW. From the 96 genes identified, 46 were functionally annotated. The remaining 50 genes have unknown functions due to the lack of significant matches in the databases. Our results demonstrate a novel annotated phage, whose genome serves to expand the understanding of phage biology and potential implications as alternative treatment to antibiotics.</description><issn>1718-0775</issn><issn>1718-0783</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2022</creationdate><recordtype>article</recordtype><recordid>eNo9kL1OwzAYRS0EElXpzugXSPBf4mQsEZSKAgPdLcf-DKmSuLKTSu3TEwXEXe6Zrq4OQveUpCwXgj90cQyH9ERlQ1Mq-RVaUEmLhMiCX_-zzG7RKsYDmcKpyGS-QNUGet8BXve9H_TQ-B57h9_9CVr8SvHnWJt2jAME_HY2vtZmwsYfv_UX4Me2uVx0sHfoxuk2wuqvl2j__LSvXpLdx2ZbrXeJKThPWAmSaidKWphSCFlPp6SFGpwgVlpNaK6BMSaddYJlmmgigVnHQddARM6XiPzOmuBjDODUMTSdDmdFiZo1qFmDmjWoSQP_AeL5UvM</recordid><startdate>20220408</startdate><enddate>20220408</enddate><creator>Brouillard-Galipeau, Morgane</creator><creator>Chau, Bao-An</creator><creator>Cyr, Jamie</creator><creator>Intrevado, Rafael</creator><creator>Kim, Sunu</creator><creator>Koger-Pease, Cal</creator><creator>Lapshina, Elizabeth</creator><creator>Mircescu, Alexandra</creator><creator>Serrador, Daniella</creator><creator>Slattery, Michael</creator><creator>Vonniessen, Benjamin</creator><creator>Shamash, Michael</creator><creator>Chahal, Jasmin</creator><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>20220408</creationdate><title>Genome Annotation of Novel K1 Subcluster Mycobacteriophage Blizzard</title><author>Brouillard-Galipeau, Morgane ; Chau, Bao-An ; Cyr, Jamie ; Intrevado, Rafael ; Kim, Sunu ; Koger-Pease, Cal ; Lapshina, Elizabeth ; Mircescu, Alexandra ; Serrador, Daniella ; Slattery, Michael ; Vonniessen, Benjamin ; Shamash, Michael ; Chahal, Jasmin</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c833-29e71af4918c9447b7187debef40d7da016ae2227fdf425a0a07e2df3eabe0463</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2022</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Brouillard-Galipeau, Morgane</creatorcontrib><creatorcontrib>Chau, Bao-An</creatorcontrib><creatorcontrib>Cyr, Jamie</creatorcontrib><creatorcontrib>Intrevado, Rafael</creatorcontrib><creatorcontrib>Kim, Sunu</creatorcontrib><creatorcontrib>Koger-Pease, Cal</creatorcontrib><creatorcontrib>Lapshina, Elizabeth</creatorcontrib><creatorcontrib>Mircescu, Alexandra</creatorcontrib><creatorcontrib>Serrador, Daniella</creatorcontrib><creatorcontrib>Slattery, Michael</creatorcontrib><creatorcontrib>Vonniessen, Benjamin</creatorcontrib><creatorcontrib>Shamash, Michael</creatorcontrib><creatorcontrib>Chahal, Jasmin</creatorcontrib><collection>CrossRef</collection><jtitle>McGill Science undergraduate research journal</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Brouillard-Galipeau, Morgane</au><au>Chau, Bao-An</au><au>Cyr, Jamie</au><au>Intrevado, Rafael</au><au>Kim, Sunu</au><au>Koger-Pease, Cal</au><au>Lapshina, Elizabeth</au><au>Mircescu, Alexandra</au><au>Serrador, Daniella</au><au>Slattery, Michael</au><au>Vonniessen, Benjamin</au><au>Shamash, Michael</au><au>Chahal, Jasmin</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Genome Annotation of Novel K1 Subcluster Mycobacteriophage Blizzard</atitle><jtitle>McGill Science undergraduate research journal</jtitle><date>2022-04-08</date><risdate>2022</risdate><volume>17</volume><issue>1</issue><spage>23</spage><epage>29</epage><pages>23-29</pages><issn>1718-0775</issn><eissn>1718-0783</eissn><abstract>The evolution of antimicrobial resistant pathogens constitutes a significant global public health threat. Combined with the lack of incentive for pharmaceutical companies to invest in developing new antibiotics, it is clear alternative treatments are needed. Bacteriophages present one possible avenue as they harness the diversity and specificity of a microorganism that has coevolved with bacteria. However, little is known about these bacterial viruses. The SEA-PHAGES program was designed to identify and characterize novel bacteriophages and their associated gene functions. Herein, we report the genome annotation of one such novel phage: Mycobacteriophage Blizzard (GenBank accession number MW712733). Blizzard’s gene content was functionally annotated using bioinformatic tools including DNA Master, Phamerator, and NCBI BLAST, to call start sites as well as predict gene function. Overall, 96 genes were identified, including a tRNA and a translational frameshift, using highly similar reference phages BEEST, Belladonna, and CREW. From the 96 genes identified, 46 were functionally annotated. The remaining 50 genes have unknown functions due to the lack of significant matches in the databases. Our results demonstrate a novel annotated phage, whose genome serves to expand the understanding of phage biology and potential implications as alternative treatment to antibiotics.</abstract><doi>10.26443/msurj.v17i1.173</doi><tpages>7</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1718-0775
ispartof McGill Science undergraduate research journal, 2022-04, Vol.17 (1), p.23-29
issn 1718-0775
1718-0783
language eng
recordid cdi_crossref_primary_10_26443_msurj_v17i1_173
source EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection; Free Full-Text Journals in Chemistry
title Genome Annotation of Novel K1 Subcluster Mycobacteriophage Blizzard
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-21T16%3A46%3A45IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-crossref&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Genome%20Annotation%20of%20Novel%20K1%20Subcluster%20Mycobacteriophage%20Blizzard&rft.jtitle=McGill%20Science%20undergraduate%20research%20journal&rft.au=Brouillard-Galipeau,%20Morgane&rft.date=2022-04-08&rft.volume=17&rft.issue=1&rft.spage=23&rft.epage=29&rft.pages=23-29&rft.issn=1718-0775&rft.eissn=1718-0783&rft_id=info:doi/10.26443/msurj.v17i1.173&rft_dat=%3Ccrossref%3E10_26443_msurj_v17i1_173%3C/crossref%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true