Application of the Numerical Characteristic of Formal Order Analysis of the Prokaryotic Genomes for Reclassification within the Genus Rickettsia
Genomes representing Rickettsiaceae family were analyzed using formal order analysis (FOA) of information chain in order to develop a new approach for the classification of prokaryotes. Average remoteness – the numerical characteristic of order was used to compare the genomes. FOA allows one to dire...
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| Veröffentlicht in: | Matematicheskai︠a︡ biologii︠a︡ i bioinformatika = Mathematical biology and bioinformatics 2016-12, Vol.11 (2), p.336-350 |
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| container_title | Matematicheskai︠a︡ biologii︠a︡ i bioinformatika = Mathematical biology and bioinformatics |
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| creator | Шпынов, С.Н. Shpynov, S.N. |
| description | Genomes representing Rickettsiaceae family were analyzed using formal order analysis (FOA) of information chain in order to develop a new approach for
the classification of prokaryotes. Average remoteness – the numerical characteristic of order was used to compare the genomes. FOA allows one to directly
take into account arrangement of nucleotides in each sequence. The obtained results clarified the previously known classification. In addition
Rickettsia felis
group was discovered between the ancestral group and spotted fever group (SFG) and
R. akari
group located between the SFG and genus
Orientia
. Software used for the analysis of
nucleotide sequences with FOA is freely available at http://foarlab.org. |
| doi_str_mv | 10.17537/2016.11.336 |
| format | Article |
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the classification of prokaryotes. Average remoteness – the numerical characteristic of order was used to compare the genomes. FOA allows one to directly
take into account arrangement of nucleotides in each sequence. The obtained results clarified the previously known classification. In addition
Rickettsia felis
group was discovered between the ancestral group and spotted fever group (SFG) and
R. akari
group located between the SFG and genus
Orientia
. Software used for the analysis of
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the classification of prokaryotes. Average remoteness – the numerical characteristic of order was used to compare the genomes. FOA allows one to directly
take into account arrangement of nucleotides in each sequence. The obtained results clarified the previously known classification. In addition
Rickettsia felis
group was discovered between the ancestral group and spotted fever group (SFG) and
R. akari
group located between the SFG and genus
Orientia
. Software used for the analysis of
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the classification of prokaryotes. Average remoteness – the numerical characteristic of order was used to compare the genomes. FOA allows one to directly
take into account arrangement of nucleotides in each sequence. The obtained results clarified the previously known classification. In addition
Rickettsia felis
group was discovered between the ancestral group and spotted fever group (SFG) and
R. akari
group located between the SFG and genus
Orientia
. Software used for the analysis of
nucleotide sequences with FOA is freely available at http://foarlab.org.</abstract><doi>10.17537/2016.11.336</doi><tpages>15</tpages><oa>free_for_read</oa></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1994-6538 |
| ispartof | Matematicheskai︠a︡ biologii︠a︡ i bioinformatika = Mathematical biology and bioinformatics, 2016-12, Vol.11 (2), p.336-350 |
| issn | 1994-6538 1994-6538 |
| language | eng |
| recordid | cdi_crossref_primary_10_17537_2016_11_336 |
| source | Math-Net.Ru (free access); EZB Electronic Journals Library |
| title | Application of the Numerical Characteristic of Formal Order Analysis of the Prokaryotic Genomes for Reclassification within the Genus Rickettsia |
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