Texture analysis improves level set segmentation of the anterior abdominal wall
Purpose: The treatment of ventral hernias (VH) has been a challenging problem for medical care. Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide...
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Veröffentlicht in: | Medical physics (Lancaster) 2013-12, Vol.40 (12), p.121901-n/a |
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creator | Xu, Zhoubing Allen, Wade M. Baucom, Rebeccah B. Poulose, Benjamin K. Landman, Bennett A. |
description | Purpose:
The treatment of ventral hernias (VH) has been a challenging problem for medical care. Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide intervention through expert, but qualitative, clinical judgments, notably, quantitative metrics based on image-processing are not used. The authors propose that image segmentation methods to capture the three-dimensional structure of the abdominal wall and its abnormalities will provide a foundation on which to measure geometric properties of hernias and surrounding tissues and, therefore, to optimize intervention.
Methods:
In this study with 20 clinically acquired CT scans on postoperative patients, the authors demonstrated a novel approach to geometric classification of the abdominal. The authors’ approach uses a texture analysis based on Gabor filters to extract feature vectors and follows a fuzzy c-means clustering method to estimate voxelwise probability memberships for eight clusters. The memberships estimated from the texture analysis are helpful to identify anatomical structures with inhomogeneous intensities. The membership was used to guide the level set evolution, as well as to derive an initial start close to the abdominal wall.
Results:
Segmentation results on abdominal walls were both quantitatively and qualitatively validated with surface errors based on manually labeled ground truth. Using texture, mean surface errors for the outer surface of the abdominal wall were less than 2 mm, with 91% of the outer surface less than 5 mm away from the manual tracings; errors were significantly greater (2–5 mm) for methods that did not use the texture.
Conclusions:
The authors’ approach establishes a baseline for characterizing the abdominal wall for improving VH care. Inherent texture patterns in CT scans are helpful to the tissue classification, and texture analysis can improve the level set segmentation around the abdominal region. |
doi_str_mv | 10.1118/1.4828791 |
format | Article |
fullrecord | <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1118_1_4828791</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>1467069931</sourcerecordid><originalsourceid>FETCH-LOGICAL-c5111-9b98914202de1cc8df0b6af33371f4468c89ad9cb5780cb0c8cfee816432e3a63</originalsourceid><addsrcrecordid>eNp9kc1q3DAUhUVoSKZpFn2BYuimDTjVn21pUyih-YGUdJGshSxfZ1RkayppJp23ryaeDCmhEQgt9N2jTxyE3hN8SggRX8gpF1Q0kuyhGeUNKznF8g2aYSx5STmuDtHbGH9hjGtW4QN0SDmjuCJ0hm5u4U9aBij0qN062ljYYRH8CmLhYAWuiJDyvh9gTDpZPxa-L9J8wycI1odCt50fbJ4uHrRz79B-r12E4-15hO7Ov9-eXZbXNxdXZ9-uS1Nl5VK2UkiSNWkHxBjR9bitdc8Ya0jPeS2MkLqTpq0agU2LjTA9gCB1Fgema3aEvk65i2U7QGeyXtBOLYIddFgrr63692a0c3XvV4oJJjjdBHycAnxMVkVjE5i58eMIJimaF2ZYZOrT9pngfy8hJjXYaMA5PYJfRkV43eBaSkYy-nlCTfAxBuh3MgSrTU2KqG1Nmf3w3H5HPvWSgXICHqyD9f-T1I-f28CTid985LGn3czKh2f8outfg1-q_gXS6Lej</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>1467069931</pqid></control><display><type>article</type><title>Texture analysis improves level set segmentation of the anterior abdominal wall</title><source>MEDLINE</source><source>Wiley Online Library Journals Frontfile Complete</source><source>Alma/SFX Local Collection</source><creator>Xu, Zhoubing ; Allen, Wade M. ; Baucom, Rebeccah B. ; Poulose, Benjamin K. ; Landman, Bennett A.</creator><creatorcontrib>Xu, Zhoubing ; Allen, Wade M. ; Baucom, Rebeccah B. ; Poulose, Benjamin K. ; Landman, Bennett A.</creatorcontrib><description>Purpose:
The treatment of ventral hernias (VH) has been a challenging problem for medical care. Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide intervention through expert, but qualitative, clinical judgments, notably, quantitative metrics based on image-processing are not used. The authors propose that image segmentation methods to capture the three-dimensional structure of the abdominal wall and its abnormalities will provide a foundation on which to measure geometric properties of hernias and surrounding tissues and, therefore, to optimize intervention.
Methods:
In this study with 20 clinically acquired CT scans on postoperative patients, the authors demonstrated a novel approach to geometric classification of the abdominal. The authors’ approach uses a texture analysis based on Gabor filters to extract feature vectors and follows a fuzzy c-means clustering method to estimate voxelwise probability memberships for eight clusters. The memberships estimated from the texture analysis are helpful to identify anatomical structures with inhomogeneous intensities. The membership was used to guide the level set evolution, as well as to derive an initial start close to the abdominal wall.
Results:
Segmentation results on abdominal walls were both quantitatively and qualitatively validated with surface errors based on manually labeled ground truth. Using texture, mean surface errors for the outer surface of the abdominal wall were less than 2 mm, with 91% of the outer surface less than 5 mm away from the manual tracings; errors were significantly greater (2–5 mm) for methods that did not use the texture.
Conclusions:
The authors’ approach establishes a baseline for characterizing the abdominal wall for improving VH care. Inherent texture patterns in CT scans are helpful to the tissue classification, and texture analysis can improve the level set segmentation around the abdominal region.</description><identifier>ISSN: 0094-2405</identifier><identifier>EISSN: 2473-4209</identifier><identifier>EISSN: 0094-2405</identifier><identifier>DOI: 10.1118/1.4828791</identifier><identifier>PMID: 24320512</identifier><identifier>CODEN: MPHYA6</identifier><language>eng</language><publisher>United States: American Association of Physicists in Medicine</publisher><subject>abdominal wall ; Abdominal Wall - surgery ; Algorithms ; Analysis of texture ; Biological material, e.g. blood, urine; Haemocytometers ; biological tissues ; Cluster analysis ; Computed tomography ; Computerised tomographs ; computerised tomography ; COMPUTERIZED TOMOGRAPHY ; Digital computing or data processing equipment or methods, specially adapted for specific applications ; ERRORS ; FAILURES ; feature extraction ; fuzzy logic ; Gabor filters ; Humans ; image classification ; Image data processing or generation, in general ; IMAGE PROCESSING ; Image Processing, Computer-Assisted - methods ; image segmentation ; image texture ; level set ; medical image processing ; Medical image segmentation ; Medical image smoothing ; Medical imaging ; Muscles ; patient treatment ; PATIENTS ; pattern clustering ; Preoperative Period ; Radiation Imaging Physics ; Radiography, Abdominal - methods ; RADIOLOGY AND NUCLEAR MEDICINE ; Reservations, e.g. for tickets, services or events ; Rough surfaces ; Segmentation ; Skin ; texture analysis ; Tissue engineering ; Tissues ; Tomography, X-Ray Computed - methods ; ventral hernia ; X‐ray imaging</subject><ispartof>Medical physics (Lancaster), 2013-12, Vol.40 (12), p.121901-n/a</ispartof><rights>American Association of Physicists in Medicine</rights><rights>2013 American Association of Physicists in Medicine</rights><rights>Copyright © 2013 American Association of Physicists in Medicine 2013 American Association of Physicists in Medicine</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c5111-9b98914202de1cc8df0b6af33371f4468c89ad9cb5780cb0c8cfee816432e3a63</citedby><cites>FETCH-LOGICAL-c5111-9b98914202de1cc8df0b6af33371f4468c89ad9cb5780cb0c8cfee816432e3a63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1118%2F1.4828791$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1118%2F1.4828791$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>230,314,776,780,881,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/24320512$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink><backlink>$$Uhttps://www.osti.gov/biblio/22220308$$D View this record in Osti.gov$$Hfree_for_read</backlink></links><search><creatorcontrib>Xu, Zhoubing</creatorcontrib><creatorcontrib>Allen, Wade M.</creatorcontrib><creatorcontrib>Baucom, Rebeccah B.</creatorcontrib><creatorcontrib>Poulose, Benjamin K.</creatorcontrib><creatorcontrib>Landman, Bennett A.</creatorcontrib><title>Texture analysis improves level set segmentation of the anterior abdominal wall</title><title>Medical physics (Lancaster)</title><addtitle>Med Phys</addtitle><description>Purpose:
The treatment of ventral hernias (VH) has been a challenging problem for medical care. Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide intervention through expert, but qualitative, clinical judgments, notably, quantitative metrics based on image-processing are not used. The authors propose that image segmentation methods to capture the three-dimensional structure of the abdominal wall and its abnormalities will provide a foundation on which to measure geometric properties of hernias and surrounding tissues and, therefore, to optimize intervention.
Methods:
In this study with 20 clinically acquired CT scans on postoperative patients, the authors demonstrated a novel approach to geometric classification of the abdominal. The authors’ approach uses a texture analysis based on Gabor filters to extract feature vectors and follows a fuzzy c-means clustering method to estimate voxelwise probability memberships for eight clusters. The memberships estimated from the texture analysis are helpful to identify anatomical structures with inhomogeneous intensities. The membership was used to guide the level set evolution, as well as to derive an initial start close to the abdominal wall.
Results:
Segmentation results on abdominal walls were both quantitatively and qualitatively validated with surface errors based on manually labeled ground truth. Using texture, mean surface errors for the outer surface of the abdominal wall were less than 2 mm, with 91% of the outer surface less than 5 mm away from the manual tracings; errors were significantly greater (2–5 mm) for methods that did not use the texture.
Conclusions:
The authors’ approach establishes a baseline for characterizing the abdominal wall for improving VH care. Inherent texture patterns in CT scans are helpful to the tissue classification, and texture analysis can improve the level set segmentation around the abdominal region.</description><subject>abdominal wall</subject><subject>Abdominal Wall - surgery</subject><subject>Algorithms</subject><subject>Analysis of texture</subject><subject>Biological material, e.g. blood, urine; Haemocytometers</subject><subject>biological tissues</subject><subject>Cluster analysis</subject><subject>Computed tomography</subject><subject>Computerised tomographs</subject><subject>computerised tomography</subject><subject>COMPUTERIZED TOMOGRAPHY</subject><subject>Digital computing or data processing equipment or methods, specially adapted for specific applications</subject><subject>ERRORS</subject><subject>FAILURES</subject><subject>feature extraction</subject><subject>fuzzy logic</subject><subject>Gabor filters</subject><subject>Humans</subject><subject>image classification</subject><subject>Image data processing or generation, in general</subject><subject>IMAGE PROCESSING</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>image segmentation</subject><subject>image texture</subject><subject>level set</subject><subject>medical image processing</subject><subject>Medical image segmentation</subject><subject>Medical image smoothing</subject><subject>Medical imaging</subject><subject>Muscles</subject><subject>patient treatment</subject><subject>PATIENTS</subject><subject>pattern clustering</subject><subject>Preoperative Period</subject><subject>Radiation Imaging Physics</subject><subject>Radiography, Abdominal - methods</subject><subject>RADIOLOGY AND NUCLEAR MEDICINE</subject><subject>Reservations, e.g. for tickets, services or events</subject><subject>Rough surfaces</subject><subject>Segmentation</subject><subject>Skin</subject><subject>texture analysis</subject><subject>Tissue engineering</subject><subject>Tissues</subject><subject>Tomography, X-Ray Computed - methods</subject><subject>ventral hernia</subject><subject>X‐ray imaging</subject><issn>0094-2405</issn><issn>2473-4209</issn><issn>0094-2405</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1q3DAUhUVoSKZpFn2BYuimDTjVn21pUyih-YGUdJGshSxfZ1RkayppJp23ryaeDCmhEQgt9N2jTxyE3hN8SggRX8gpF1Q0kuyhGeUNKznF8g2aYSx5STmuDtHbGH9hjGtW4QN0SDmjuCJ0hm5u4U9aBij0qN062ljYYRH8CmLhYAWuiJDyvh9gTDpZPxa-L9J8wycI1odCt50fbJ4uHrRz79B-r12E4-15hO7Ov9-eXZbXNxdXZ9-uS1Nl5VK2UkiSNWkHxBjR9bitdc8Ya0jPeS2MkLqTpq0agU2LjTA9gCB1Fgema3aEvk65i2U7QGeyXtBOLYIddFgrr63692a0c3XvV4oJJjjdBHycAnxMVkVjE5i58eMIJimaF2ZYZOrT9pngfy8hJjXYaMA5PYJfRkV43eBaSkYy-nlCTfAxBuh3MgSrTU2KqG1Nmf3w3H5HPvWSgXICHqyD9f-T1I-f28CTid985LGn3czKh2f8outfg1-q_gXS6Lej</recordid><startdate>201312</startdate><enddate>201312</enddate><creator>Xu, Zhoubing</creator><creator>Allen, Wade M.</creator><creator>Baucom, Rebeccah B.</creator><creator>Poulose, Benjamin K.</creator><creator>Landman, Bennett A.</creator><general>American Association of Physicists in Medicine</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>OTOTI</scope><scope>5PM</scope></search><sort><creationdate>201312</creationdate><title>Texture analysis improves level set segmentation of the anterior abdominal wall</title><author>Xu, Zhoubing ; Allen, Wade M. ; Baucom, Rebeccah B. ; Poulose, Benjamin K. ; Landman, Bennett A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5111-9b98914202de1cc8df0b6af33371f4468c89ad9cb5780cb0c8cfee816432e3a63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>abdominal wall</topic><topic>Abdominal Wall - surgery</topic><topic>Algorithms</topic><topic>Analysis of texture</topic><topic>Biological material, e.g. blood, urine; Haemocytometers</topic><topic>biological tissues</topic><topic>Cluster analysis</topic><topic>Computed tomography</topic><topic>Computerised tomographs</topic><topic>computerised tomography</topic><topic>COMPUTERIZED TOMOGRAPHY</topic><topic>Digital computing or data processing equipment or methods, specially adapted for specific applications</topic><topic>ERRORS</topic><topic>FAILURES</topic><topic>feature extraction</topic><topic>fuzzy logic</topic><topic>Gabor filters</topic><topic>Humans</topic><topic>image classification</topic><topic>Image data processing or generation, in general</topic><topic>IMAGE PROCESSING</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>image segmentation</topic><topic>image texture</topic><topic>level set</topic><topic>medical image processing</topic><topic>Medical image segmentation</topic><topic>Medical image smoothing</topic><topic>Medical imaging</topic><topic>Muscles</topic><topic>patient treatment</topic><topic>PATIENTS</topic><topic>pattern clustering</topic><topic>Preoperative Period</topic><topic>Radiation Imaging Physics</topic><topic>Radiography, Abdominal - methods</topic><topic>RADIOLOGY AND NUCLEAR MEDICINE</topic><topic>Reservations, e.g. for tickets, services or events</topic><topic>Rough surfaces</topic><topic>Segmentation</topic><topic>Skin</topic><topic>texture analysis</topic><topic>Tissue engineering</topic><topic>Tissues</topic><topic>Tomography, X-Ray Computed - methods</topic><topic>ventral hernia</topic><topic>X‐ray imaging</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xu, Zhoubing</creatorcontrib><creatorcontrib>Allen, Wade M.</creatorcontrib><creatorcontrib>Baucom, Rebeccah B.</creatorcontrib><creatorcontrib>Poulose, Benjamin K.</creatorcontrib><creatorcontrib>Landman, Bennett A.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Medical physics (Lancaster)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xu, Zhoubing</au><au>Allen, Wade M.</au><au>Baucom, Rebeccah B.</au><au>Poulose, Benjamin K.</au><au>Landman, Bennett A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Texture analysis improves level set segmentation of the anterior abdominal wall</atitle><jtitle>Medical physics (Lancaster)</jtitle><addtitle>Med Phys</addtitle><date>2013-12</date><risdate>2013</risdate><volume>40</volume><issue>12</issue><spage>121901</spage><epage>n/a</epage><pages>121901-n/a</pages><issn>0094-2405</issn><eissn>2473-4209</eissn><eissn>0094-2405</eissn><coden>MPHYA6</coden><abstract>Purpose:
The treatment of ventral hernias (VH) has been a challenging problem for medical care. Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide intervention through expert, but qualitative, clinical judgments, notably, quantitative metrics based on image-processing are not used. The authors propose that image segmentation methods to capture the three-dimensional structure of the abdominal wall and its abnormalities will provide a foundation on which to measure geometric properties of hernias and surrounding tissues and, therefore, to optimize intervention.
Methods:
In this study with 20 clinically acquired CT scans on postoperative patients, the authors demonstrated a novel approach to geometric classification of the abdominal. The authors’ approach uses a texture analysis based on Gabor filters to extract feature vectors and follows a fuzzy c-means clustering method to estimate voxelwise probability memberships for eight clusters. The memberships estimated from the texture analysis are helpful to identify anatomical structures with inhomogeneous intensities. The membership was used to guide the level set evolution, as well as to derive an initial start close to the abdominal wall.
Results:
Segmentation results on abdominal walls were both quantitatively and qualitatively validated with surface errors based on manually labeled ground truth. Using texture, mean surface errors for the outer surface of the abdominal wall were less than 2 mm, with 91% of the outer surface less than 5 mm away from the manual tracings; errors were significantly greater (2–5 mm) for methods that did not use the texture.
Conclusions:
The authors’ approach establishes a baseline for characterizing the abdominal wall for improving VH care. Inherent texture patterns in CT scans are helpful to the tissue classification, and texture analysis can improve the level set segmentation around the abdominal region.</abstract><cop>United States</cop><pub>American Association of Physicists in Medicine</pub><pmid>24320512</pmid><doi>10.1118/1.4828791</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record> |
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subjects | abdominal wall Abdominal Wall - surgery Algorithms Analysis of texture Biological material, e.g. blood, urine Haemocytometers biological tissues Cluster analysis Computed tomography Computerised tomographs computerised tomography COMPUTERIZED TOMOGRAPHY Digital computing or data processing equipment or methods, specially adapted for specific applications ERRORS FAILURES feature extraction fuzzy logic Gabor filters Humans image classification Image data processing or generation, in general IMAGE PROCESSING Image Processing, Computer-Assisted - methods image segmentation image texture level set medical image processing Medical image segmentation Medical image smoothing Medical imaging Muscles patient treatment PATIENTS pattern clustering Preoperative Period Radiation Imaging Physics Radiography, Abdominal - methods RADIOLOGY AND NUCLEAR MEDICINE Reservations, e.g. for tickets, services or events Rough surfaces Segmentation Skin texture analysis Tissue engineering Tissues Tomography, X-Ray Computed - methods ventral hernia X‐ray imaging |
title | Texture analysis improves level set segmentation of the anterior abdominal wall |
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