Texture analysis improves level set segmentation of the anterior abdominal wall

Purpose: The treatment of ventral hernias (VH) has been a challenging problem for medical care. Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide...

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Veröffentlicht in:Medical physics (Lancaster) 2013-12, Vol.40 (12), p.121901-n/a
Hauptverfasser: Xu, Zhoubing, Allen, Wade M., Baucom, Rebeccah B., Poulose, Benjamin K., Landman, Bennett A.
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container_issue 12
container_start_page 121901
container_title Medical physics (Lancaster)
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creator Xu, Zhoubing
Allen, Wade M.
Baucom, Rebeccah B.
Poulose, Benjamin K.
Landman, Bennett A.
description Purpose: The treatment of ventral hernias (VH) has been a challenging problem for medical care. Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide intervention through expert, but qualitative, clinical judgments, notably, quantitative metrics based on image-processing are not used. The authors propose that image segmentation methods to capture the three-dimensional structure of the abdominal wall and its abnormalities will provide a foundation on which to measure geometric properties of hernias and surrounding tissues and, therefore, to optimize intervention. Methods: In this study with 20 clinically acquired CT scans on postoperative patients, the authors demonstrated a novel approach to geometric classification of the abdominal. The authors’ approach uses a texture analysis based on Gabor filters to extract feature vectors and follows a fuzzy c-means clustering method to estimate voxelwise probability memberships for eight clusters. The memberships estimated from the texture analysis are helpful to identify anatomical structures with inhomogeneous intensities. The membership was used to guide the level set evolution, as well as to derive an initial start close to the abdominal wall. Results: Segmentation results on abdominal walls were both quantitatively and qualitatively validated with surface errors based on manually labeled ground truth. Using texture, mean surface errors for the outer surface of the abdominal wall were less than 2 mm, with 91% of the outer surface less than 5 mm away from the manual tracings; errors were significantly greater (2–5 mm) for methods that did not use the texture. Conclusions: The authors’ approach establishes a baseline for characterizing the abdominal wall for improving VH care. Inherent texture patterns in CT scans are helpful to the tissue classification, and texture analysis can improve the level set segmentation around the abdominal region.
doi_str_mv 10.1118/1.4828791
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Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide intervention through expert, but qualitative, clinical judgments, notably, quantitative metrics based on image-processing are not used. The authors propose that image segmentation methods to capture the three-dimensional structure of the abdominal wall and its abnormalities will provide a foundation on which to measure geometric properties of hernias and surrounding tissues and, therefore, to optimize intervention. Methods: In this study with 20 clinically acquired CT scans on postoperative patients, the authors demonstrated a novel approach to geometric classification of the abdominal. The authors’ approach uses a texture analysis based on Gabor filters to extract feature vectors and follows a fuzzy c-means clustering method to estimate voxelwise probability memberships for eight clusters. The memberships estimated from the texture analysis are helpful to identify anatomical structures with inhomogeneous intensities. The membership was used to guide the level set evolution, as well as to derive an initial start close to the abdominal wall. Results: Segmentation results on abdominal walls were both quantitatively and qualitatively validated with surface errors based on manually labeled ground truth. Using texture, mean surface errors for the outer surface of the abdominal wall were less than 2 mm, with 91% of the outer surface less than 5 mm away from the manual tracings; errors were significantly greater (2–5 mm) for methods that did not use the texture. Conclusions: The authors’ approach establishes a baseline for characterizing the abdominal wall for improving VH care. 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Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide intervention through expert, but qualitative, clinical judgments, notably, quantitative metrics based on image-processing are not used. The authors propose that image segmentation methods to capture the three-dimensional structure of the abdominal wall and its abnormalities will provide a foundation on which to measure geometric properties of hernias and surrounding tissues and, therefore, to optimize intervention. Methods: In this study with 20 clinically acquired CT scans on postoperative patients, the authors demonstrated a novel approach to geometric classification of the abdominal. The authors’ approach uses a texture analysis based on Gabor filters to extract feature vectors and follows a fuzzy c-means clustering method to estimate voxelwise probability memberships for eight clusters. The memberships estimated from the texture analysis are helpful to identify anatomical structures with inhomogeneous intensities. The membership was used to guide the level set evolution, as well as to derive an initial start close to the abdominal wall. Results: Segmentation results on abdominal walls were both quantitatively and qualitatively validated with surface errors based on manually labeled ground truth. Using texture, mean surface errors for the outer surface of the abdominal wall were less than 2 mm, with 91% of the outer surface less than 5 mm away from the manual tracings; errors were significantly greater (2–5 mm) for methods that did not use the texture. Conclusions: The authors’ approach establishes a baseline for characterizing the abdominal wall for improving VH care. Inherent texture patterns in CT scans are helpful to the tissue classification, and texture analysis can improve the level set segmentation around the abdominal region.</description><subject>abdominal wall</subject><subject>Abdominal Wall - surgery</subject><subject>Algorithms</subject><subject>Analysis of texture</subject><subject>Biological material, e.g. blood, urine; Haemocytometers</subject><subject>biological tissues</subject><subject>Cluster analysis</subject><subject>Computed tomography</subject><subject>Computerised tomographs</subject><subject>computerised tomography</subject><subject>COMPUTERIZED TOMOGRAPHY</subject><subject>Digital computing or data processing equipment or methods, specially adapted for specific applications</subject><subject>ERRORS</subject><subject>FAILURES</subject><subject>feature extraction</subject><subject>fuzzy logic</subject><subject>Gabor filters</subject><subject>Humans</subject><subject>image classification</subject><subject>Image data processing or generation, in general</subject><subject>IMAGE PROCESSING</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>image segmentation</subject><subject>image texture</subject><subject>level set</subject><subject>medical image processing</subject><subject>Medical image segmentation</subject><subject>Medical image smoothing</subject><subject>Medical imaging</subject><subject>Muscles</subject><subject>patient treatment</subject><subject>PATIENTS</subject><subject>pattern clustering</subject><subject>Preoperative Period</subject><subject>Radiation Imaging Physics</subject><subject>Radiography, Abdominal - methods</subject><subject>RADIOLOGY AND NUCLEAR MEDICINE</subject><subject>Reservations, e.g. for tickets, services or events</subject><subject>Rough surfaces</subject><subject>Segmentation</subject><subject>Skin</subject><subject>texture analysis</subject><subject>Tissue engineering</subject><subject>Tissues</subject><subject>Tomography, X-Ray Computed - methods</subject><subject>ventral hernia</subject><subject>X‐ray imaging</subject><issn>0094-2405</issn><issn>2473-4209</issn><issn>0094-2405</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2013</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNp9kc1q3DAUhUVoSKZpFn2BYuimDTjVn21pUyih-YGUdJGshSxfZ1RkayppJp23ryaeDCmhEQgt9N2jTxyE3hN8SggRX8gpF1Q0kuyhGeUNKznF8g2aYSx5STmuDtHbGH9hjGtW4QN0SDmjuCJ0hm5u4U9aBij0qN062ljYYRH8CmLhYAWuiJDyvh9gTDpZPxa-L9J8wycI1odCt50fbJ4uHrRz79B-r12E4-15hO7Ov9-eXZbXNxdXZ9-uS1Nl5VK2UkiSNWkHxBjR9bitdc8Ya0jPeS2MkLqTpq0agU2LjTA9gCB1Fgema3aEvk65i2U7QGeyXtBOLYIddFgrr63692a0c3XvV4oJJjjdBHycAnxMVkVjE5i58eMIJimaF2ZYZOrT9pngfy8hJjXYaMA5PYJfRkV43eBaSkYy-nlCTfAxBuh3MgSrTU2KqG1Nmf3w3H5HPvWSgXICHqyD9f-T1I-f28CTid985LGn3czKh2f8outfg1-q_gXS6Lej</recordid><startdate>201312</startdate><enddate>201312</enddate><creator>Xu, Zhoubing</creator><creator>Allen, Wade M.</creator><creator>Baucom, Rebeccah B.</creator><creator>Poulose, Benjamin K.</creator><creator>Landman, Bennett A.</creator><general>American Association of Physicists in Medicine</general><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>OTOTI</scope><scope>5PM</scope></search><sort><creationdate>201312</creationdate><title>Texture analysis improves level set segmentation of the anterior abdominal wall</title><author>Xu, Zhoubing ; Allen, Wade M. ; Baucom, Rebeccah B. ; Poulose, Benjamin K. ; Landman, Bennett A.</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c5111-9b98914202de1cc8df0b6af33371f4468c89ad9cb5780cb0c8cfee816432e3a63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2013</creationdate><topic>abdominal wall</topic><topic>Abdominal Wall - surgery</topic><topic>Algorithms</topic><topic>Analysis of texture</topic><topic>Biological material, e.g. blood, urine; Haemocytometers</topic><topic>biological tissues</topic><topic>Cluster analysis</topic><topic>Computed tomography</topic><topic>Computerised tomographs</topic><topic>computerised tomography</topic><topic>COMPUTERIZED TOMOGRAPHY</topic><topic>Digital computing or data processing equipment or methods, specially adapted for specific applications</topic><topic>ERRORS</topic><topic>FAILURES</topic><topic>feature extraction</topic><topic>fuzzy logic</topic><topic>Gabor filters</topic><topic>Humans</topic><topic>image classification</topic><topic>Image data processing or generation, in general</topic><topic>IMAGE PROCESSING</topic><topic>Image Processing, Computer-Assisted - methods</topic><topic>image segmentation</topic><topic>image texture</topic><topic>level set</topic><topic>medical image processing</topic><topic>Medical image segmentation</topic><topic>Medical image smoothing</topic><topic>Medical imaging</topic><topic>Muscles</topic><topic>patient treatment</topic><topic>PATIENTS</topic><topic>pattern clustering</topic><topic>Preoperative Period</topic><topic>Radiation Imaging Physics</topic><topic>Radiography, Abdominal - methods</topic><topic>RADIOLOGY AND NUCLEAR MEDICINE</topic><topic>Reservations, e.g. for tickets, services or events</topic><topic>Rough surfaces</topic><topic>Segmentation</topic><topic>Skin</topic><topic>texture analysis</topic><topic>Tissue engineering</topic><topic>Tissues</topic><topic>Tomography, X-Ray Computed - methods</topic><topic>ventral hernia</topic><topic>X‐ray imaging</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Xu, Zhoubing</creatorcontrib><creatorcontrib>Allen, Wade M.</creatorcontrib><creatorcontrib>Baucom, Rebeccah B.</creatorcontrib><creatorcontrib>Poulose, Benjamin K.</creatorcontrib><creatorcontrib>Landman, Bennett A.</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>OSTI.GOV</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Medical physics (Lancaster)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Xu, Zhoubing</au><au>Allen, Wade M.</au><au>Baucom, Rebeccah B.</au><au>Poulose, Benjamin K.</au><au>Landman, Bennett A.</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Texture analysis improves level set segmentation of the anterior abdominal wall</atitle><jtitle>Medical physics (Lancaster)</jtitle><addtitle>Med Phys</addtitle><date>2013-12</date><risdate>2013</risdate><volume>40</volume><issue>12</issue><spage>121901</spage><epage>n/a</epage><pages>121901-n/a</pages><issn>0094-2405</issn><eissn>2473-4209</eissn><eissn>0094-2405</eissn><coden>MPHYA6</coden><abstract>Purpose: The treatment of ventral hernias (VH) has been a challenging problem for medical care. Repair of these hernias is fraught with failure; recurrence rates ranging from 24% to 43% have been reported, even with the use of biocompatible mesh. Currently, computed tomography (CT) is used to guide intervention through expert, but qualitative, clinical judgments, notably, quantitative metrics based on image-processing are not used. The authors propose that image segmentation methods to capture the three-dimensional structure of the abdominal wall and its abnormalities will provide a foundation on which to measure geometric properties of hernias and surrounding tissues and, therefore, to optimize intervention. Methods: In this study with 20 clinically acquired CT scans on postoperative patients, the authors demonstrated a novel approach to geometric classification of the abdominal. The authors’ approach uses a texture analysis based on Gabor filters to extract feature vectors and follows a fuzzy c-means clustering method to estimate voxelwise probability memberships for eight clusters. The memberships estimated from the texture analysis are helpful to identify anatomical structures with inhomogeneous intensities. The membership was used to guide the level set evolution, as well as to derive an initial start close to the abdominal wall. Results: Segmentation results on abdominal walls were both quantitatively and qualitatively validated with surface errors based on manually labeled ground truth. Using texture, mean surface errors for the outer surface of the abdominal wall were less than 2 mm, with 91% of the outer surface less than 5 mm away from the manual tracings; errors were significantly greater (2–5 mm) for methods that did not use the texture. Conclusions: The authors’ approach establishes a baseline for characterizing the abdominal wall for improving VH care. Inherent texture patterns in CT scans are helpful to the tissue classification, and texture analysis can improve the level set segmentation around the abdominal region.</abstract><cop>United States</cop><pub>American Association of Physicists in Medicine</pub><pmid>24320512</pmid><doi>10.1118/1.4828791</doi><tpages>11</tpages><oa>free_for_read</oa></addata></record>
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source MEDLINE; Wiley Online Library Journals Frontfile Complete; Alma/SFX Local Collection
subjects abdominal wall
Abdominal Wall - surgery
Algorithms
Analysis of texture
Biological material, e.g. blood, urine
Haemocytometers
biological tissues
Cluster analysis
Computed tomography
Computerised tomographs
computerised tomography
COMPUTERIZED TOMOGRAPHY
Digital computing or data processing equipment or methods, specially adapted for specific applications
ERRORS
FAILURES
feature extraction
fuzzy logic
Gabor filters
Humans
image classification
Image data processing or generation, in general
IMAGE PROCESSING
Image Processing, Computer-Assisted - methods
image segmentation
image texture
level set
medical image processing
Medical image segmentation
Medical image smoothing
Medical imaging
Muscles
patient treatment
PATIENTS
pattern clustering
Preoperative Period
Radiation Imaging Physics
Radiography, Abdominal - methods
RADIOLOGY AND NUCLEAR MEDICINE
Reservations, e.g. for tickets, services or events
Rough surfaces
Segmentation
Skin
texture analysis
Tissue engineering
Tissues
Tomography, X-Ray Computed - methods
ventral hernia
X‐ray imaging
title Texture analysis improves level set segmentation of the anterior abdominal wall
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