Rapid and highly sensitive portable detection of African swine fever virus
African swine fever (ASF) continues to spread across Asia, devastating pig populations. The disease is nearly 100% fatal in pigs, and currently, there is no effective vaccine available. Therefore, early detection of ASF is critical for effective disease control. The testing process usually requires...
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Veröffentlicht in: | Transboundary and emerging diseases 2021-03, Vol.68 (2), p.952-959 |
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creator | Daigle, Jade Onyilagha, Chukwunonso Truong, Thang Le, Van Phan Nga, Bui Thi To Nguyen, Thi Lan Clavijo, Alfonso Ambagala, Aruna |
description | African swine fever (ASF) continues to spread across Asia, devastating pig populations. The disease is nearly 100% fatal in pigs, and currently, there is no effective vaccine available. Therefore, early detection of ASF is critical for effective disease control. The testing process usually requires samples to be shipped to a central laboratory, which may take many hours of travel or shipping time, delaying the results needed for a rapid response. The ability to confirm ASFV‐infected animals on‐site or in a regional laboratory that has limited technical capacity and/or infrastructure should eliminate these issues. This study describes the successful transfer of a highly sensitive and specific laboratory‐validated real‐time PCR assay to a portable pen‐side thermocycler, which can be operated in the field for rapid detection of ASFV following a quick manual nucleic acid extraction from a wide array of clinical samples including aggregate samples such as oral fluids. The performance of the portable assay was comparable to the laboratory‐based assay. The true portability of the assay was evaluated in seven ASF‐suspected farms in Vietnam by testing eighty‐nine freshly collected whole blood samples on‐site. The results obtained on‐site were in agreement with the laboratory data obtained the following day. Availability of this field‐deployable molecular assay would eliminate the need to ship samples to a central laboratory, when rapid laboratory results are required, ultimately improving the response time. |
doi_str_mv | 10.1111/tbed.13770 |
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The disease is nearly 100% fatal in pigs, and currently, there is no effective vaccine available. Therefore, early detection of ASF is critical for effective disease control. The testing process usually requires samples to be shipped to a central laboratory, which may take many hours of travel or shipping time, delaying the results needed for a rapid response. The ability to confirm ASFV‐infected animals on‐site or in a regional laboratory that has limited technical capacity and/or infrastructure should eliminate these issues. This study describes the successful transfer of a highly sensitive and specific laboratory‐validated real‐time PCR assay to a portable pen‐side thermocycler, which can be operated in the field for rapid detection of ASFV following a quick manual nucleic acid extraction from a wide array of clinical samples including aggregate samples such as oral fluids. The performance of the portable assay was comparable to the laboratory‐based assay. The true portability of the assay was evaluated in seven ASF‐suspected farms in Vietnam by testing eighty‐nine freshly collected whole blood samples on‐site. The results obtained on‐site were in agreement with the laboratory data obtained the following day. Availability of this field‐deployable molecular assay would eliminate the need to ship samples to a central laboratory, when rapid laboratory results are required, ultimately improving the response time.</description><identifier>ISSN: 1865-1674</identifier><identifier>EISSN: 1865-1682</identifier><identifier>DOI: 10.1111/tbed.13770</identifier><identifier>PMID: 32762007</identifier><language>eng</language><publisher>Germany: Hindawi Limited</publisher><subject>African swine fever ; Animal populations ; Asfarviridae ; Assaying ; Disease control ; Farms ; Fever ; Hogs ; Laboratories ; Nucleic acids ; Oral fluids ; Portability ; portable ; real‐time PCR ; Response time ; Swine</subject><ispartof>Transboundary and emerging diseases, 2021-03, Vol.68 (2), p.952-959</ispartof><rights>2020 Her Majesty the Queen in Right of Canada Transboundary and Emerging Diseases © 2020 Wiley-VCH GmbH</rights><rights>2020 Her Majesty the Queen in Right of Canada Transboundary and Emerging Diseases © 2020 Wiley-VCH GmbH.</rights><rights>Copyright © 2021 Blackwell Verlag GmbH</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3930-353951ed0ccd4768385ab45e2b9f2bbba033a1fda8485f3ee190b8a9c74219f73</citedby><cites>FETCH-LOGICAL-c3930-353951ed0ccd4768385ab45e2b9f2bbba033a1fda8485f3ee190b8a9c74219f73</cites><orcidid>0000-0002-5592-7095 ; 0000-0003-1783-2105</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1111%2Ftbed.13770$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1111%2Ftbed.13770$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/32762007$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Daigle, Jade</creatorcontrib><creatorcontrib>Onyilagha, Chukwunonso</creatorcontrib><creatorcontrib>Truong, Thang</creatorcontrib><creatorcontrib>Le, Van Phan</creatorcontrib><creatorcontrib>Nga, Bui Thi To</creatorcontrib><creatorcontrib>Nguyen, Thi Lan</creatorcontrib><creatorcontrib>Clavijo, Alfonso</creatorcontrib><creatorcontrib>Ambagala, Aruna</creatorcontrib><title>Rapid and highly sensitive portable detection of African swine fever virus</title><title>Transboundary and emerging diseases</title><addtitle>Transbound Emerg Dis</addtitle><description>African swine fever (ASF) continues to spread across Asia, devastating pig populations. The disease is nearly 100% fatal in pigs, and currently, there is no effective vaccine available. Therefore, early detection of ASF is critical for effective disease control. The testing process usually requires samples to be shipped to a central laboratory, which may take many hours of travel or shipping time, delaying the results needed for a rapid response. The ability to confirm ASFV‐infected animals on‐site or in a regional laboratory that has limited technical capacity and/or infrastructure should eliminate these issues. This study describes the successful transfer of a highly sensitive and specific laboratory‐validated real‐time PCR assay to a portable pen‐side thermocycler, which can be operated in the field for rapid detection of ASFV following a quick manual nucleic acid extraction from a wide array of clinical samples including aggregate samples such as oral fluids. The performance of the portable assay was comparable to the laboratory‐based assay. The true portability of the assay was evaluated in seven ASF‐suspected farms in Vietnam by testing eighty‐nine freshly collected whole blood samples on‐site. The results obtained on‐site were in agreement with the laboratory data obtained the following day. Availability of this field‐deployable molecular assay would eliminate the need to ship samples to a central laboratory, when rapid laboratory results are required, ultimately improving the response time.</description><subject>African swine fever</subject><subject>Animal populations</subject><subject>Asfarviridae</subject><subject>Assaying</subject><subject>Disease control</subject><subject>Farms</subject><subject>Fever</subject><subject>Hogs</subject><subject>Laboratories</subject><subject>Nucleic acids</subject><subject>Oral fluids</subject><subject>Portability</subject><subject>portable</subject><subject>real‐time PCR</subject><subject>Response time</subject><subject>Swine</subject><issn>1865-1674</issn><issn>1865-1682</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><recordid>eNp9kE1LxDAQhoMo7vpx8QdIwIsIXfPRNOlR128WBNFzSNqJG-m2a9Ku7L-32tWDB2cOMwwPD8OL0BElE9rXeWuhnFAuJdlCY6oykdBMse3fXaYjtBfjGyEZyTOxi0acyYwRIsfo4cksfYlNXeK5f51Xaxyhjr71K8DLJrTGVoBLaKFofVPjxuELF3xhahw_fA3YwQoCXvnQxQO040wV4XAz99HLzfXz9C6ZPd7eTy9mScFzThIueC4olKQoylRmiithbCqA2dwxa60hnBvqSqNSJRwHoDmxyuSFTBnNneT76HTwLkPz3kFs9cLHAqrK1NB0UbOUU0WFEKxHT_6gb00X6v47zQRVUrC-e-psoIrQxBjA6WXwCxPWmhL9lbD-Slh_J9zDxxtlZxf99Qf9ibQH6AB8-ArW_6j08-X11SD9BF6WhPk</recordid><startdate>202103</startdate><enddate>202103</enddate><creator>Daigle, Jade</creator><creator>Onyilagha, Chukwunonso</creator><creator>Truong, Thang</creator><creator>Le, Van Phan</creator><creator>Nga, Bui Thi To</creator><creator>Nguyen, Thi Lan</creator><creator>Clavijo, Alfonso</creator><creator>Ambagala, Aruna</creator><general>Hindawi Limited</general><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7QL</scope><scope>7T7</scope><scope>7U9</scope><scope>8FD</scope><scope>C1K</scope><scope>FR3</scope><scope>H94</scope><scope>M7N</scope><scope>P64</scope><scope>7X8</scope><orcidid>https://orcid.org/0000-0002-5592-7095</orcidid><orcidid>https://orcid.org/0000-0003-1783-2105</orcidid></search><sort><creationdate>202103</creationdate><title>Rapid and highly sensitive portable detection of African swine fever virus</title><author>Daigle, Jade ; 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The disease is nearly 100% fatal in pigs, and currently, there is no effective vaccine available. Therefore, early detection of ASF is critical for effective disease control. The testing process usually requires samples to be shipped to a central laboratory, which may take many hours of travel or shipping time, delaying the results needed for a rapid response. The ability to confirm ASFV‐infected animals on‐site or in a regional laboratory that has limited technical capacity and/or infrastructure should eliminate these issues. This study describes the successful transfer of a highly sensitive and specific laboratory‐validated real‐time PCR assay to a portable pen‐side thermocycler, which can be operated in the field for rapid detection of ASFV following a quick manual nucleic acid extraction from a wide array of clinical samples including aggregate samples such as oral fluids. The performance of the portable assay was comparable to the laboratory‐based assay. The true portability of the assay was evaluated in seven ASF‐suspected farms in Vietnam by testing eighty‐nine freshly collected whole blood samples on‐site. The results obtained on‐site were in agreement with the laboratory data obtained the following day. Availability of this field‐deployable molecular assay would eliminate the need to ship samples to a central laboratory, when rapid laboratory results are required, ultimately improving the response time.</abstract><cop>Germany</cop><pub>Hindawi Limited</pub><pmid>32762007</pmid><doi>10.1111/tbed.13770</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-5592-7095</orcidid><orcidid>https://orcid.org/0000-0003-1783-2105</orcidid><oa>free_for_read</oa></addata></record> |
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subjects | African swine fever Animal populations Asfarviridae Assaying Disease control Farms Fever Hogs Laboratories Nucleic acids Oral fluids Portability portable real‐time PCR Response time Swine |
title | Rapid and highly sensitive portable detection of African swine fever virus |
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