Identification of genic SSR s in jute ( Corchorus capsularis , Malvaceae) and development of markers for phenylpropanoid biosynthesis genes and regulatory genes

Identification of genic SSR s in jute ( Corchorus capsularis , Malvaceae) and development of markers for phenylpropanoid biosynthesis genes and regulatory genes

In jute ( Corchorus spp.), phenylpropanoid biosynthesis pathway is associated with lignocellulosic bast fibre development and production of various phytochemicals. Development of phenylpropanoid‐related genic markers is thus a key component of gene‐specific precision molecular breeding in jute. We i...

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Veröffentlicht in:Plant breeding 2017-10, Vol.136 (5), p.784-797
Hauptverfasser: Satya, Pratik, Chakraborty, Avrajit, Jana, Sourav, Majumdar, Snehalata, Karan, Maya, Sarkar, Debabrata, Datta, Subhojit, Mitra, Jiban, Kar, Chandan S., Karmakar, Pran Gobinda, Singh, Nagendra K.
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container_end_page 797
container_issue 5
container_start_page 784
container_title Plant breeding
container_volume 136
creator Satya, Pratik
Chakraborty, Avrajit
Jana, Sourav
Majumdar, Snehalata
Karan, Maya
Sarkar, Debabrata
Datta, Subhojit
Mitra, Jiban
Kar, Chandan S.
Karmakar, Pran Gobinda
Singh, Nagendra K.
description In jute ( Corchorus spp.), phenylpropanoid biosynthesis pathway is associated with lignocellulosic bast fibre development and production of various phytochemicals. Development of phenylpropanoid‐related genic markers is thus a key component of gene‐specific precision molecular breeding in jute. We identified a total of 12,772 SSR s in 10,041 unigenes and designed genic SSR markers associated with phenylpropanoid biosynthesis from bast transcriptome of Corchorus capsularis cv. ‘ JRC ‐212’. A total of 39 and 14 SSR markers were developed from key genes of phenylpropanoid biosynthesis and bast fibre formation, respectively. Further, we developed 457 SSR markers associated with different regulatory gene sequences. Of these, 137 markers were for transcription factors such as WRKY , MYB , MYB ‐related, bHLH and zinc finger, which are key regulators and/or modulators of the biosynthesis of phenylpropanoids. Additionally, 600 SSR primer pairs were also designed for other unigenes containing SSR . Diversity analysis based on a set of 41 genic SSR markers in 35 genotypes revealed high polymorphism. The genic SSR s described here are expected to be useful for molecular breeding targeting fibre quality, phytochemical‐related and stress tolerance traits in jute.
doi_str_mv 10.1111/pbr.12514
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title Identification of genic SSR s in jute ( Corchorus capsularis , Malvaceae) and development of markers for phenylpropanoid biosynthesis genes and regulatory genes
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