Counting by DNA Self-Assembly in the Presence of Rotated Tiles
This paper deals with counting in the presence of tile rotation in DNA self-assembly using the so-called binary counter tile set. Initially, it is shown that when considering tile rotation under the assumption of no (zero) mismatch, self-assembly may result in a different counting pattern than norma...
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| Veröffentlicht in: | IEEE transactions on nanotechnology 2011-05, Vol.10 (3), p.632-638 |
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| container_title | IEEE transactions on nanotechnology |
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| creator | Hashempour, M Arani, Z M Lombardi, F |
| description | This paper deals with counting in the presence of tile rotation in DNA self-assembly using the so-called binary counter tile set. Initially, it is shown that when considering tile rotation under the assumption of no (zero) mismatch, self-assembly may result in a different counting pattern than normally expected. A relation between counting and tile rotation is established with respect to the angle of rotation as well as the location of the rotated tile. The binary counter tile set is analyzed using a graph model, which captures the rotational and transition features of the bonding process. Simulation results using Xgrow confirm the validity of the analysis. |
| doi_str_mv | 10.1109/TNANO.2010.2059710 |
| format | Article |
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Initially, it is shown that when considering tile rotation under the assumption of no (zero) mismatch, self-assembly may result in a different counting pattern than normally expected. A relation between counting and tile rotation is established with respect to the angle of rotation as well as the location of the rotated tile. The binary counter tile set is analyzed using a graph model, which captures the rotational and transition features of the bonding process. 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Simulation results using Xgrow confirm the validity of the analysis.</description><subject>Aggregates</subject><subject>Analytical models</subject><subject>Applied sciences</subject><subject>Assembly</subject><subject>Bonding processes</subject><subject>Computational modeling</subject><subject>Counting circuits</subject><subject>Counting tile rotation</subject><subject>DNA</subject><subject>DNA self-assembly</subject><subject>Electric, optical and optoelectronic circuits</subject><subject>Electronics</subject><subject>Exact sciences and technology</subject><subject>Permission</subject><subject>Self-assembly</subject><subject>Theoretical study. 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| source | IEEE Electronic Library (IEL) |
| subjects | Aggregates Analytical models Applied sciences Assembly Bonding processes Computational modeling Counting circuits Counting tile rotation DNA DNA self-assembly Electric, optical and optoelectronic circuits Electronics Exact sciences and technology Permission Self-assembly Theoretical study. Circuits analysis and design transition graph |
| title | Counting by DNA Self-Assembly in the Presence of Rotated Tiles |
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