Spatiotemporal Independent Component Analysis for the Detection of Functional Responses in Cat Retinal Images
In the early stages of some retinal diseases, such as glaucoma, loss of retinal activity may be difficult to detect with current clinical instruments. Because current instruments require unattainable levels of patient cooperation, high sensitivity and specificity are difficult to attain. We have dev...
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description | In the early stages of some retinal diseases, such as glaucoma, loss of retinal activity may be difficult to detect with current clinical instruments. Because current instruments require unattainable levels of patient cooperation, high sensitivity and specificity are difficult to attain. We have devised a new retinal imaging system that detects intrinsic optical signals which reflect functional changes in the retina and that do not require patient cooperation. Measured changes in reflectance in response to the visual stimulus are on the order of 0.1%-1% of the total reflected intensity level, which makes the functional signal difficult to detect by standard methods. The desired functional signal is masked by other physiological signals and by imaging system noise. In this paper, we quantify the limits of independent component analysis (ICA) for detecting the low intensity functional signal and apply ICA to 60 video sequences from experiments using an anesthetized cat whose retina is presented with different patterned stimuli. The results of the analysis show that using ICA, in principle, signal levels of 0.1% can be detected. The study found that in 86% of the animal experiments the patterned stimuli effects on the retina can be detected and extracted. |
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Because current instruments require unattainable levels of patient cooperation, high sensitivity and specificity are difficult to attain. We have devised a new retinal imaging system that detects intrinsic optical signals which reflect functional changes in the retina and that do not require patient cooperation. Measured changes in reflectance in response to the visual stimulus are on the order of 0.1%-1% of the total reflected intensity level, which makes the functional signal difficult to detect by standard methods. The desired functional signal is masked by other physiological signals and by imaging system noise. In this paper, we quantify the limits of independent component analysis (ICA) for detecting the low intensity functional signal and apply ICA to 60 video sequences from experiments using an anesthetized cat whose retina is presented with different patterned stimuli. The results of the analysis show that using ICA, in principle, signal levels of 0.1% can be detected. The study found that in 86% of the animal experiments the patterned stimuli effects on the retina can be detected and extracted.</description><identifier>ISSN: 0278-0062</identifier><identifier>EISSN: 1558-254X</identifier><identifier>DOI: 10.1109/TMI.2007.897366</identifier><identifier>PMID: 17695124</identifier><identifier>CODEN: ITMID4</identifier><language>eng</language><publisher>United States: IEEE</publisher><subject>Animals ; Cats ; Diseases ; Equipment Design ; Equipment Failure Analysis ; Evoked Potentials, Visual - physiology ; Functional imaging ; Image Interpretation, Computer-Assisted - methods ; Independent component analysis ; independent component analysis (ICA) ; Instruments ; Optical detectors ; Optical imaging ; Optical losses ; Oximetry - instrumentation ; Oximetry - methods ; Photic Stimulation - methods ; Photometry - instrumentation ; Photometry - methods ; Principal Component Analysis ; Retina ; Retina - anatomy & histology ; Retina - physiology ; Retinoscopes ; Retinoscopy - methods ; Sensitivity and specificity ; Signal detection ; Spatiotemporal phenomena ; Studies ; visual stimulation</subject><ispartof>IEEE transactions on medical imaging, 2007-08, Vol.26 (8), p.1035-1045</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. (IEEE) 2007</rights><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c405t-1c7185bad4596c4be5d6640d50d3287a41e3c7599307a8624bef82b0755956e53</citedby><cites>FETCH-LOGICAL-c405t-1c7185bad4596c4be5d6640d50d3287a41e3c7599307a8624bef82b0755956e53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://ieeexplore.ieee.org/document/4280886$$EHTML$$P50$$Gieee$$H</linktohtml><link.rule.ids>314,776,780,792,27901,27902,54733</link.rule.ids><linktorsrc>$$Uhttps://ieeexplore.ieee.org/document/4280886$$EView_record_in_IEEE$$FView_record_in_$$GIEEE</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/17695124$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Barriga, E.S.</creatorcontrib><creatorcontrib>Pattichis, M..</creatorcontrib><creatorcontrib>Ts'o, D..</creatorcontrib><creatorcontrib>Abramoff, M..</creatorcontrib><creatorcontrib>Kardon, R..</creatorcontrib><creatorcontrib>Young Kwon</creatorcontrib><creatorcontrib>Soliz, P..</creatorcontrib><title>Spatiotemporal Independent Component Analysis for the Detection of Functional Responses in Cat Retinal Images</title><title>IEEE transactions on medical imaging</title><addtitle>TMI</addtitle><addtitle>IEEE Trans Med Imaging</addtitle><description>In the early stages of some retinal diseases, such as glaucoma, loss of retinal activity may be difficult to detect with current clinical instruments. Because current instruments require unattainable levels of patient cooperation, high sensitivity and specificity are difficult to attain. We have devised a new retinal imaging system that detects intrinsic optical signals which reflect functional changes in the retina and that do not require patient cooperation. Measured changes in reflectance in response to the visual stimulus are on the order of 0.1%-1% of the total reflected intensity level, which makes the functional signal difficult to detect by standard methods. The desired functional signal is masked by other physiological signals and by imaging system noise. In this paper, we quantify the limits of independent component analysis (ICA) for detecting the low intensity functional signal and apply ICA to 60 video sequences from experiments using an anesthetized cat whose retina is presented with different patterned stimuli. The results of the analysis show that using ICA, in principle, signal levels of 0.1% can be detected. The study found that in 86% of the animal experiments the patterned stimuli effects on the retina can be detected and extracted.</description><subject>Animals</subject><subject>Cats</subject><subject>Diseases</subject><subject>Equipment Design</subject><subject>Equipment Failure Analysis</subject><subject>Evoked Potentials, Visual - physiology</subject><subject>Functional imaging</subject><subject>Image Interpretation, Computer-Assisted - methods</subject><subject>Independent component analysis</subject><subject>independent component analysis (ICA)</subject><subject>Instruments</subject><subject>Optical detectors</subject><subject>Optical imaging</subject><subject>Optical losses</subject><subject>Oximetry - instrumentation</subject><subject>Oximetry - methods</subject><subject>Photic Stimulation - methods</subject><subject>Photometry - instrumentation</subject><subject>Photometry - methods</subject><subject>Principal Component Analysis</subject><subject>Retina</subject><subject>Retina - anatomy & histology</subject><subject>Retina - physiology</subject><subject>Retinoscopes</subject><subject>Retinoscopy - methods</subject><subject>Sensitivity and specificity</subject><subject>Signal detection</subject><subject>Spatiotemporal phenomena</subject><subject>Studies</subject><subject>visual stimulation</subject><issn>0278-0062</issn><issn>1558-254X</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2007</creationdate><recordtype>article</recordtype><sourceid>RIE</sourceid><sourceid>EIF</sourceid><recordid>eNqFkU1v1DAQhi0EokvhzAEJWRzglO2M489jtVBYqQgJisQt8iYTSJXEaewc-u9x2BVIHODiGc0879jjl7HnCFtEcBc3H_dbAWC21plS6wdsg0rZQij57SHbgDC2ANDijD2J8RYApQL3mJ2h0U6hkBs2fJl86kKiYQqz7_l-bGiifIyJ70Iujmt2Ofr-PnaRt2Hm6Qfxt5SozrqRh5ZfLeOvPMs_U8ySSJF3I9_5lAupWxv7wX-n-JQ9an0f6dkpnrOvV-9udh-K60_v97vL66KWoFKBtUGrDr6RyulaHkg1WktoFDSlsMZLpLI2yrkSjLdaZKK14gBGKac0qfKcvTnOneZwt1BM1dDFmvrejxSWWFkj0SGAzOTrf5Laoi6txv-C6CRqU7oMvvoLvA3LnP8gX5uXUFqb9YEXR6ieQ4wztdU0d4Of7yuEanW2ys5Wq7PV0dmseHkauxwGav7wJysz8OIIdET0uy2FBWt1-RMu_KZa</recordid><startdate>20070801</startdate><enddate>20070801</enddate><creator>Barriga, E.S.</creator><creator>Pattichis, M..</creator><creator>Ts'o, D..</creator><creator>Abramoff, M..</creator><creator>Kardon, R..</creator><creator>Young Kwon</creator><creator>Soliz, P..</creator><general>IEEE</general><general>The Institute of Electrical and Electronics Engineers, Inc. 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physiology</topic><topic>Functional imaging</topic><topic>Image Interpretation, Computer-Assisted - methods</topic><topic>Independent component analysis</topic><topic>independent component analysis (ICA)</topic><topic>Instruments</topic><topic>Optical detectors</topic><topic>Optical imaging</topic><topic>Optical losses</topic><topic>Oximetry - instrumentation</topic><topic>Oximetry - methods</topic><topic>Photic Stimulation - methods</topic><topic>Photometry - instrumentation</topic><topic>Photometry - methods</topic><topic>Principal Component Analysis</topic><topic>Retina</topic><topic>Retina - anatomy & histology</topic><topic>Retina - physiology</topic><topic>Retinoscopes</topic><topic>Retinoscopy - methods</topic><topic>Sensitivity and specificity</topic><topic>Signal detection</topic><topic>Spatiotemporal phenomena</topic><topic>Studies</topic><topic>visual stimulation</topic><toplevel>online_resources</toplevel><creatorcontrib>Barriga, E.S.</creatorcontrib><creatorcontrib>Pattichis, M..</creatorcontrib><creatorcontrib>Ts'o, D..</creatorcontrib><creatorcontrib>Abramoff, M..</creatorcontrib><creatorcontrib>Kardon, R..</creatorcontrib><creatorcontrib>Young Kwon</creatorcontrib><creatorcontrib>Soliz, P..</creatorcontrib><collection>IEEE All-Society Periodicals Package (ASPP) 2005-present</collection><collection>IEEE All-Society Periodicals Package (ASPP) 1998-Present</collection><collection>IEEE Electronic Library (IEL)</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>Aluminium Industry Abstracts</collection><collection>Biotechnology Research Abstracts</collection><collection>Ceramic Abstracts</collection><collection>Computer and Information Systems Abstracts</collection><collection>Corrosion Abstracts</collection><collection>Electronics & Communications Abstracts</collection><collection>Engineered Materials Abstracts</collection><collection>Materials Business File</collection><collection>Mechanical & Transportation Engineering Abstracts</collection><collection>Solid State and Superconductivity Abstracts</collection><collection>METADEX</collection><collection>Technology Research Database</collection><collection>ANTE: Abstracts in New Technology & Engineering</collection><collection>Engineering Research Database</collection><collection>Aerospace Database</collection><collection>Materials Research Database</collection><collection>ProQuest Computer Science Collection</collection><collection>Civil Engineering Abstracts</collection><collection>Advanced Technologies Database with Aerospace</collection><collection>Computer and Information Systems Abstracts Academic</collection><collection>Computer and Information Systems Abstracts Professional</collection><collection>Nursing & Allied Health Premium</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>MEDLINE - Academic</collection><jtitle>IEEE transactions on medical imaging</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext_linktorsrc</fulltext></delivery><addata><au>Barriga, E.S.</au><au>Pattichis, M..</au><au>Ts'o, D..</au><au>Abramoff, M..</au><au>Kardon, R..</au><au>Young Kwon</au><au>Soliz, P..</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Spatiotemporal Independent Component Analysis for the Detection of Functional Responses in Cat Retinal Images</atitle><jtitle>IEEE transactions on medical imaging</jtitle><stitle>TMI</stitle><addtitle>IEEE Trans Med Imaging</addtitle><date>2007-08-01</date><risdate>2007</risdate><volume>26</volume><issue>8</issue><spage>1035</spage><epage>1045</epage><pages>1035-1045</pages><issn>0278-0062</issn><eissn>1558-254X</eissn><coden>ITMID4</coden><abstract>In the early stages of some retinal diseases, such as glaucoma, loss of retinal activity may be difficult to detect with current clinical instruments. Because current instruments require unattainable levels of patient cooperation, high sensitivity and specificity are difficult to attain. We have devised a new retinal imaging system that detects intrinsic optical signals which reflect functional changes in the retina and that do not require patient cooperation. Measured changes in reflectance in response to the visual stimulus are on the order of 0.1%-1% of the total reflected intensity level, which makes the functional signal difficult to detect by standard methods. The desired functional signal is masked by other physiological signals and by imaging system noise. In this paper, we quantify the limits of independent component analysis (ICA) for detecting the low intensity functional signal and apply ICA to 60 video sequences from experiments using an anesthetized cat whose retina is presented with different patterned stimuli. The results of the analysis show that using ICA, in principle, signal levels of 0.1% can be detected. The study found that in 86% of the animal experiments the patterned stimuli effects on the retina can be detected and extracted.</abstract><cop>United States</cop><pub>IEEE</pub><pmid>17695124</pmid><doi>10.1109/TMI.2007.897366</doi><tpages>11</tpages></addata></record> |
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subjects | Animals Cats Diseases Equipment Design Equipment Failure Analysis Evoked Potentials, Visual - physiology Functional imaging Image Interpretation, Computer-Assisted - methods Independent component analysis independent component analysis (ICA) Instruments Optical detectors Optical imaging Optical losses Oximetry - instrumentation Oximetry - methods Photic Stimulation - methods Photometry - instrumentation Photometry - methods Principal Component Analysis Retina Retina - anatomy & histology Retina - physiology Retinoscopes Retinoscopy - methods Sensitivity and specificity Signal detection Spatiotemporal phenomena Studies visual stimulation |
title | Spatiotemporal Independent Component Analysis for the Detection of Functional Responses in Cat Retinal Images |
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