Segmentation and Measurement of Chronic Wounds for Bioprinting
Objective: to provide a proof-of-concept tool for segmenting chronic wounds and transmitting the results as instructions and coordinates to a bioprinter robot and thus facilitate the treatment of chronic wounds. Methods: several segmentation methods used for measuring wound geometry, including edge-...
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Veröffentlicht in: | IEEE journal of biomedical and health informatics 2018-07, Vol.22 (4), p.1269-1277 |
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creator | Gholami, Peyman Ahmadi-pajouh, Mohammad Ali Abolftahi, Nabiollah Hamarneh, Ghassan Kayvanrad, Mohammad |
description | Objective: to provide a proof-of-concept tool for segmenting chronic wounds and transmitting the results as instructions and coordinates to a bioprinter robot and thus facilitate the treatment of chronic wounds. Methods: several segmentation methods used for measuring wound geometry, including edge-detection and morphological operations, region-growing, Livewire, active contours, and texture segmentation, were compared on 26 images from 15 subjects. Ground-truth wound delineations were generated by a dermatologist. The wound coordinates were converted into G-code understandable by the bioprinting robot. Due to its desirable properties, alginate hydrogel was synthesized by dissolving 16% (w/v) sodium-alginate and 4% (w/v) gelatin in deionized water and used for cell encapsulation. Results: Livewire achieved the best performance, with minimal user interaction: 97.08%, 99.68% 96.67%, 96.22, 98.15, and 32.26, mean values, respectively, for accuracy, sensitivity, specificity, Jaccard index, Dice similarity coefficient, and Hausdorff distance. The bioprinter robot was able to print skin cells on the surface of skin with a 95.56% similarity between the bioprinted patch's dimensions and the desired wound geometry. Conclusion: we have designed a novel approach for the healing of chronic wounds, based on semiautomatic segmentation of wound images, improving clinicians' control of the bioprinting process through more accurate coordinates. Significance: this study is the first to perform wound bioprinting based on image segmentation. It also compares several segmentation methods used for this purpose to determine the best. |
doi_str_mv | 10.1109/JBHI.2017.2743526 |
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Methods: several segmentation methods used for measuring wound geometry, including edge-detection and morphological operations, region-growing, Livewire, active contours, and texture segmentation, were compared on 26 images from 15 subjects. Ground-truth wound delineations were generated by a dermatologist. The wound coordinates were converted into G-code understandable by the bioprinting robot. Due to its desirable properties, alginate hydrogel was synthesized by dissolving 16% (w/v) sodium-alginate and 4% (w/v) gelatin in deionized water and used for cell encapsulation. Results: Livewire achieved the best performance, with minimal user interaction: 97.08%, 99.68% 96.67%, 96.22, 98.15, and 32.26, mean values, respectively, for accuracy, sensitivity, specificity, Jaccard index, Dice similarity coefficient, and Hausdorff distance. The bioprinter robot was able to print skin cells on the surface of skin with a 95.56% similarity between the bioprinted patch's dimensions and the desired wound geometry. Conclusion: we have designed a novel approach for the healing of chronic wounds, based on semiautomatic segmentation of wound images, improving clinicians' control of the bioprinting process through more accurate coordinates. Significance: this study is the first to perform wound bioprinting based on image segmentation. It also compares several segmentation methods used for this purpose to determine the best.</description><identifier>ISSN: 2168-2194</identifier><identifier>EISSN: 2168-2208</identifier><identifier>DOI: 10.1109/JBHI.2017.2743526</identifier><identifier>PMID: 28841560</identifier><identifier>CODEN: IJBHA9</identifier><language>eng</language><publisher>United States: IEEE</publisher><subject>Alginates ; Alginic acid ; Algorithms ; Aliginate-gel ; bio-ink ; Bioengineering ; Biomedical imaging ; Biomedical measurement ; Bioprinting ; Bioprinting - methods ; Chronic Disease ; chronic wound ; Deionization ; Gelatin ; Geometry ; Humans ; Hydrogels ; Image edge detection ; Image processing ; Image Processing, Computer-Assisted - methods ; Image segmentation ; Measurement methods ; Robots ; Similarity ; Skin ; Skin - diagnostic imaging ; Skin - pathology ; Skin Ulcer - diagnostic imaging ; Sodium ; Three dimensional printing ; Tissue Engineering - methods ; Tissue Scaffolds ; Wound healing ; Wound Healing - physiology ; Wounds ; Wounds and Injuries - diagnostic imaging</subject><ispartof>IEEE journal of biomedical and health informatics, 2018-07, Vol.22 (4), p.1269-1277</ispartof><rights>Copyright The Institute of Electrical and Electronics Engineers, Inc. (IEEE) 2018</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c349t-c4ca153a297084f0974c9c1fbeb913794ff9281f27b3a4d66a6e93d73914537e3</citedby><cites>FETCH-LOGICAL-c349t-c4ca153a297084f0974c9c1fbeb913794ff9281f27b3a4d66a6e93d73914537e3</cites><orcidid>0000-0001-5040-7448 ; 0000-0003-0006-6774 ; 0000-0002-3783-8187</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktohtml>$$Uhttps://ieeexplore.ieee.org/document/8015107$$EHTML$$P50$$Gieee$$H</linktohtml><link.rule.ids>314,780,784,796,27924,27925,54758</link.rule.ids><linktorsrc>$$Uhttps://ieeexplore.ieee.org/document/8015107$$EView_record_in_IEEE$$FView_record_in_$$GIEEE</linktorsrc><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/28841560$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Gholami, Peyman</creatorcontrib><creatorcontrib>Ahmadi-pajouh, Mohammad Ali</creatorcontrib><creatorcontrib>Abolftahi, Nabiollah</creatorcontrib><creatorcontrib>Hamarneh, Ghassan</creatorcontrib><creatorcontrib>Kayvanrad, Mohammad</creatorcontrib><title>Segmentation and Measurement of Chronic Wounds for Bioprinting</title><title>IEEE journal of biomedical and health informatics</title><addtitle>JBHI</addtitle><addtitle>IEEE J Biomed Health Inform</addtitle><description>Objective: to provide a proof-of-concept tool for segmenting chronic wounds and transmitting the results as instructions and coordinates to a bioprinter robot and thus facilitate the treatment of chronic wounds. Methods: several segmentation methods used for measuring wound geometry, including edge-detection and morphological operations, region-growing, Livewire, active contours, and texture segmentation, were compared on 26 images from 15 subjects. Ground-truth wound delineations were generated by a dermatologist. The wound coordinates were converted into G-code understandable by the bioprinting robot. Due to its desirable properties, alginate hydrogel was synthesized by dissolving 16% (w/v) sodium-alginate and 4% (w/v) gelatin in deionized water and used for cell encapsulation. Results: Livewire achieved the best performance, with minimal user interaction: 97.08%, 99.68% 96.67%, 96.22, 98.15, and 32.26, mean values, respectively, for accuracy, sensitivity, specificity, Jaccard index, Dice similarity coefficient, and Hausdorff distance. The bioprinter robot was able to print skin cells on the surface of skin with a 95.56% similarity between the bioprinted patch's dimensions and the desired wound geometry. Conclusion: we have designed a novel approach for the healing of chronic wounds, based on semiautomatic segmentation of wound images, improving clinicians' control of the bioprinting process through more accurate coordinates. Significance: this study is the first to perform wound bioprinting based on image segmentation. It also compares several segmentation methods used for this purpose to determine the best.</description><subject>Alginates</subject><subject>Alginic acid</subject><subject>Algorithms</subject><subject>Aliginate-gel</subject><subject>bio-ink</subject><subject>Bioengineering</subject><subject>Biomedical imaging</subject><subject>Biomedical measurement</subject><subject>Bioprinting</subject><subject>Bioprinting - methods</subject><subject>Chronic Disease</subject><subject>chronic wound</subject><subject>Deionization</subject><subject>Gelatin</subject><subject>Geometry</subject><subject>Humans</subject><subject>Hydrogels</subject><subject>Image edge detection</subject><subject>Image processing</subject><subject>Image Processing, Computer-Assisted - methods</subject><subject>Image segmentation</subject><subject>Measurement methods</subject><subject>Robots</subject><subject>Similarity</subject><subject>Skin</subject><subject>Skin - diagnostic imaging</subject><subject>Skin - pathology</subject><subject>Skin Ulcer - diagnostic imaging</subject><subject>Sodium</subject><subject>Three dimensional printing</subject><subject>Tissue Engineering - methods</subject><subject>Tissue Scaffolds</subject><subject>Wound healing</subject><subject>Wound Healing - physiology</subject><subject>Wounds</subject><subject>Wounds and Injuries - diagnostic imaging</subject><issn>2168-2194</issn><issn>2168-2208</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>RIE</sourceid><sourceid>EIF</sourceid><recordid>eNpdkMtKAzEUQIMottR-gAgy4MZNa26SyWMj2KK2UnGh4jKkM0md0iY1mVn4907pY2E2CTfnvg5Cl4CHAFjdvYwm0yHBIIZEMJoTfoK6BLgcEILl6eENinVQP6Ulbo9sQ4qfow6RkkHOcRfdv9vF2vra1FXwmfFl9mpNaqLdBrPgsvF3DL4qsq_Q-DJlLsRsVIVNrHxd-cUFOnNmlWx_f_fQ59Pjx3gymL09T8cPs0FBmaoHBSsM5NQQJbBkDivBClWAm9u5AioUc04RCY6IOTWs5Nxwq2gpqAKWU2FpD93u6m5i-GlsqvW6SoVdrYy3oUkaFCUyx7kULXrzD12GJvp2Ok1AsJxx3vbsIdhRRQwpRet0u9LaxF8NWG_96q1fvfWr937bnOt95Wa-tuUx42CzBa52QGWtPX5LDDlgQf8AtyJ8Ng</recordid><startdate>201807</startdate><enddate>201807</enddate><creator>Gholami, Peyman</creator><creator>Ahmadi-pajouh, Mohammad Ali</creator><creator>Abolftahi, Nabiollah</creator><creator>Hamarneh, Ghassan</creator><creator>Kayvanrad, Mohammad</creator><general>IEEE</general><general>The Institute of Electrical and Electronics Engineers, Inc. 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Methods: several segmentation methods used for measuring wound geometry, including edge-detection and morphological operations, region-growing, Livewire, active contours, and texture segmentation, were compared on 26 images from 15 subjects. Ground-truth wound delineations were generated by a dermatologist. The wound coordinates were converted into G-code understandable by the bioprinting robot. Due to its desirable properties, alginate hydrogel was synthesized by dissolving 16% (w/v) sodium-alginate and 4% (w/v) gelatin in deionized water and used for cell encapsulation. Results: Livewire achieved the best performance, with minimal user interaction: 97.08%, 99.68% 96.67%, 96.22, 98.15, and 32.26, mean values, respectively, for accuracy, sensitivity, specificity, Jaccard index, Dice similarity coefficient, and Hausdorff distance. The bioprinter robot was able to print skin cells on the surface of skin with a 95.56% similarity between the bioprinted patch's dimensions and the desired wound geometry. Conclusion: we have designed a novel approach for the healing of chronic wounds, based on semiautomatic segmentation of wound images, improving clinicians' control of the bioprinting process through more accurate coordinates. Significance: this study is the first to perform wound bioprinting based on image segmentation. It also compares several segmentation methods used for this purpose to determine the best.</abstract><cop>United States</cop><pub>IEEE</pub><pmid>28841560</pmid><doi>10.1109/JBHI.2017.2743526</doi><tpages>9</tpages><orcidid>https://orcid.org/0000-0001-5040-7448</orcidid><orcidid>https://orcid.org/0000-0003-0006-6774</orcidid><orcidid>https://orcid.org/0000-0002-3783-8187</orcidid></addata></record> |
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subjects | Alginates Alginic acid Algorithms Aliginate-gel bio-ink Bioengineering Biomedical imaging Biomedical measurement Bioprinting Bioprinting - methods Chronic Disease chronic wound Deionization Gelatin Geometry Humans Hydrogels Image edge detection Image processing Image Processing, Computer-Assisted - methods Image segmentation Measurement methods Robots Similarity Skin Skin - diagnostic imaging Skin - pathology Skin Ulcer - diagnostic imaging Sodium Three dimensional printing Tissue Engineering - methods Tissue Scaffolds Wound healing Wound Healing - physiology Wounds Wounds and Injuries - diagnostic imaging |
title | Segmentation and Measurement of Chronic Wounds for Bioprinting |
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