Synthesis and crystal structures of new chiral 3-amino-2 H -azirines and the Pd complex of one of them

3-Amino-2 H -azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2 H -azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structur...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Acta crystallographica. Section C, Structural chemistry Structural chemistry, 2023-03, Vol.79 (3), p.104-111
Hauptverfasser: Linden, Anthony, Bucher, Christoph B., Gubler, Ralf, Villalgordo, José M., Heimgartner, Heinz
Format: Artikel
Sprache:eng
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 111
container_issue 3
container_start_page 104
container_title Acta crystallographica. Section C, Structural chemistry
container_volume 79
creator Linden, Anthony
Bucher, Christoph B.
Gubler, Ralf
Villalgordo, José M.
Heimgartner, Heinz
description 3-Amino-2 H -azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2 H -azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures of two of them, an approximately 1:1 diastereoisomeric mixture of (2 R )- and (2 S )-2-ethyl-3-[(2 S )-2-(1-methoxy-1,1-diphenylmethyl)pyrrolidin-1-yl]-2-methyl-2 H -azirine, C 23 H 28 N 2 O, 11 , and 2-benzyl-3-( N -methyl- N -phenylamino)-2-phenyl-2 H -azirine, C 22 H 20 N 2 , 12 , and the third as its diastereoisomeric trans -PdCl 2 complex, trans -dichlorido[(2 R )-2-ethyl-2-methyl-3-( X )-2 H -azirine][(2 S )-2-ethyl-2-methyl-3-( X )-2 H -azirine]palladium(II), where X  = N -{[(1 S ,2 S ,5 S )-6,6-dimethylbicyclo[3.1.1]heptan-2-yl]methyl}- N -phenylamino, [PdCl 2 (C 21 H 30 N 2 ) 2 ], 14 , have been determined and the geometries of the azirine rings compared with those of 11 other 3-amino-2 H -azirine structures reported in the literature. Most notable is the very long formal N—C single bond, which is, with one exception, around 1.57 Å. Each compound has crystallized in a chiral space group. The Pd atom in the trans -PdCl 2 complex is coordinated by one of each of the pair of diastereoisomers, while both of the diastereoisomers share the same crystallographic site in the structure of 11 ; this property thereby manifesting itself as disorder. The chosen crystal of 12 is either an inversion twin or composed of a pure enantiomorph, but this could not be established specifically.
doi_str_mv 10.1107/S2053229623001468
format Article
fullrecord <record><control><sourceid>crossref</sourceid><recordid>TN_cdi_crossref_primary_10_1107_S2053229623001468</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_1107_S2053229623001468</sourcerecordid><originalsourceid>FETCH-LOGICAL-c908-ecaf8690855f4970f515cfeef9c73aaf68aa55751b171b7db80bda1708cc56d73</originalsourceid><addsrcrecordid>eNplUN1KwzAYDaLgmHsA7_IC0XzJ0qSXMtQJA4XtvnxNExZZ05F0aH16W-bFwKtzOH8Xh5B74A8AXD9uBVdSiLIQknNYFuaKzCaJTdr1Bb8li5w_-RgCobSGGfHbIfZ7l0OmGBtq05B7PNDcp5PtT8ll2nka3Re1-5BGQzJsQ-yYoGvK8CekEN25Oq7Qj3Gha48H9z3VuugmGI32jtx4PGS3-MM52b0871Zrtnl_fVs9bZgtuWHOojfFyJTyy1Jzr0BZ75wvrZaIvjCISmkFNWiodVMbXjcImhtrVdFoOSdwnrWpyzk5Xx1TaDENFfBquqr6d5X8BdFIW50</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Synthesis and crystal structures of new chiral 3-amino-2 H -azirines and the Pd complex of one of them</title><source>Wiley Online Library Journals Frontfile Complete</source><source>Alma/SFX Local Collection</source><creator>Linden, Anthony ; Bucher, Christoph B. ; Gubler, Ralf ; Villalgordo, José M. ; Heimgartner, Heinz</creator><creatorcontrib>Linden, Anthony ; Bucher, Christoph B. ; Gubler, Ralf ; Villalgordo, José M. ; Heimgartner, Heinz</creatorcontrib><description>3-Amino-2 H -azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2 H -azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures of two of them, an approximately 1:1 diastereoisomeric mixture of (2 R )- and (2 S )-2-ethyl-3-[(2 S )-2-(1-methoxy-1,1-diphenylmethyl)pyrrolidin-1-yl]-2-methyl-2 H -azirine, C 23 H 28 N 2 O, 11 , and 2-benzyl-3-( N -methyl- N -phenylamino)-2-phenyl-2 H -azirine, C 22 H 20 N 2 , 12 , and the third as its diastereoisomeric trans -PdCl 2 complex, trans -dichlorido[(2 R )-2-ethyl-2-methyl-3-( X )-2 H -azirine][(2 S )-2-ethyl-2-methyl-3-( X )-2 H -azirine]palladium(II), where X  = N -{[(1 S ,2 S ,5 S )-6,6-dimethylbicyclo[3.1.1]heptan-2-yl]methyl}- N -phenylamino, [PdCl 2 (C 21 H 30 N 2 ) 2 ], 14 , have been determined and the geometries of the azirine rings compared with those of 11 other 3-amino-2 H -azirine structures reported in the literature. Most notable is the very long formal N—C single bond, which is, with one exception, around 1.57 Å. Each compound has crystallized in a chiral space group. The Pd atom in the trans -PdCl 2 complex is coordinated by one of each of the pair of diastereoisomers, while both of the diastereoisomers share the same crystallographic site in the structure of 11 ; this property thereby manifesting itself as disorder. The chosen crystal of 12 is either an inversion twin or composed of a pure enantiomorph, but this could not be established specifically.</description><identifier>ISSN: 2053-2296</identifier><identifier>EISSN: 2053-2296</identifier><identifier>DOI: 10.1107/S2053229623001468</identifier><language>eng</language><ispartof>Acta crystallographica. Section C, Structural chemistry, 2023-03, Vol.79 (3), p.104-111</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c908-ecaf8690855f4970f515cfeef9c73aaf68aa55751b171b7db80bda1708cc56d73</citedby><cites>FETCH-LOGICAL-c908-ecaf8690855f4970f515cfeef9c73aaf68aa55751b171b7db80bda1708cc56d73</cites><orcidid>0000-0002-5145-4251 ; 0000-0002-9343-9180</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids></links><search><creatorcontrib>Linden, Anthony</creatorcontrib><creatorcontrib>Bucher, Christoph B.</creatorcontrib><creatorcontrib>Gubler, Ralf</creatorcontrib><creatorcontrib>Villalgordo, José M.</creatorcontrib><creatorcontrib>Heimgartner, Heinz</creatorcontrib><title>Synthesis and crystal structures of new chiral 3-amino-2 H -azirines and the Pd complex of one of them</title><title>Acta crystallographica. Section C, Structural chemistry</title><description>3-Amino-2 H -azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2 H -azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures of two of them, an approximately 1:1 diastereoisomeric mixture of (2 R )- and (2 S )-2-ethyl-3-[(2 S )-2-(1-methoxy-1,1-diphenylmethyl)pyrrolidin-1-yl]-2-methyl-2 H -azirine, C 23 H 28 N 2 O, 11 , and 2-benzyl-3-( N -methyl- N -phenylamino)-2-phenyl-2 H -azirine, C 22 H 20 N 2 , 12 , and the third as its diastereoisomeric trans -PdCl 2 complex, trans -dichlorido[(2 R )-2-ethyl-2-methyl-3-( X )-2 H -azirine][(2 S )-2-ethyl-2-methyl-3-( X )-2 H -azirine]palladium(II), where X  = N -{[(1 S ,2 S ,5 S )-6,6-dimethylbicyclo[3.1.1]heptan-2-yl]methyl}- N -phenylamino, [PdCl 2 (C 21 H 30 N 2 ) 2 ], 14 , have been determined and the geometries of the azirine rings compared with those of 11 other 3-amino-2 H -azirine structures reported in the literature. Most notable is the very long formal N—C single bond, which is, with one exception, around 1.57 Å. Each compound has crystallized in a chiral space group. The Pd atom in the trans -PdCl 2 complex is coordinated by one of each of the pair of diastereoisomers, while both of the diastereoisomers share the same crystallographic site in the structure of 11 ; this property thereby manifesting itself as disorder. The chosen crystal of 12 is either an inversion twin or composed of a pure enantiomorph, but this could not be established specifically.</description><issn>2053-2296</issn><issn>2053-2296</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNplUN1KwzAYDaLgmHsA7_IC0XzJ0qSXMtQJA4XtvnxNExZZ05F0aH16W-bFwKtzOH8Xh5B74A8AXD9uBVdSiLIQknNYFuaKzCaJTdr1Bb8li5w_-RgCobSGGfHbIfZ7l0OmGBtq05B7PNDcp5PtT8ll2nka3Re1-5BGQzJsQ-yYoGvK8CekEN25Oq7Qj3Gha48H9z3VuugmGI32jtx4PGS3-MM52b0871Zrtnl_fVs9bZgtuWHOojfFyJTyy1Jzr0BZ75wvrZaIvjCISmkFNWiodVMbXjcImhtrVdFoOSdwnrWpyzk5Xx1TaDENFfBquqr6d5X8BdFIW50</recordid><startdate>20230301</startdate><enddate>20230301</enddate><creator>Linden, Anthony</creator><creator>Bucher, Christoph B.</creator><creator>Gubler, Ralf</creator><creator>Villalgordo, José M.</creator><creator>Heimgartner, Heinz</creator><scope>AAYXX</scope><scope>CITATION</scope><orcidid>https://orcid.org/0000-0002-5145-4251</orcidid><orcidid>https://orcid.org/0000-0002-9343-9180</orcidid></search><sort><creationdate>20230301</creationdate><title>Synthesis and crystal structures of new chiral 3-amino-2 H -azirines and the Pd complex of one of them</title><author>Linden, Anthony ; Bucher, Christoph B. ; Gubler, Ralf ; Villalgordo, José M. ; Heimgartner, Heinz</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c908-ecaf8690855f4970f515cfeef9c73aaf68aa55751b171b7db80bda1708cc56d73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Linden, Anthony</creatorcontrib><creatorcontrib>Bucher, Christoph B.</creatorcontrib><creatorcontrib>Gubler, Ralf</creatorcontrib><creatorcontrib>Villalgordo, José M.</creatorcontrib><creatorcontrib>Heimgartner, Heinz</creatorcontrib><collection>CrossRef</collection><jtitle>Acta crystallographica. Section C, Structural chemistry</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Linden, Anthony</au><au>Bucher, Christoph B.</au><au>Gubler, Ralf</au><au>Villalgordo, José M.</au><au>Heimgartner, Heinz</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Synthesis and crystal structures of new chiral 3-amino-2 H -azirines and the Pd complex of one of them</atitle><jtitle>Acta crystallographica. Section C, Structural chemistry</jtitle><date>2023-03-01</date><risdate>2023</risdate><volume>79</volume><issue>3</issue><spage>104</spage><epage>111</epage><pages>104-111</pages><issn>2053-2296</issn><eissn>2053-2296</eissn><abstract>3-Amino-2 H -azirines are potentially versatile building blocks in heterocyclic and peptide synthesis. Three new 3-amino-2 H -azirines have been synthesized as racemates or mixtures of diastereoisomers in cases where another chiral residue is incorporated as the exocyclic amine. The crystal structures of two of them, an approximately 1:1 diastereoisomeric mixture of (2 R )- and (2 S )-2-ethyl-3-[(2 S )-2-(1-methoxy-1,1-diphenylmethyl)pyrrolidin-1-yl]-2-methyl-2 H -azirine, C 23 H 28 N 2 O, 11 , and 2-benzyl-3-( N -methyl- N -phenylamino)-2-phenyl-2 H -azirine, C 22 H 20 N 2 , 12 , and the third as its diastereoisomeric trans -PdCl 2 complex, trans -dichlorido[(2 R )-2-ethyl-2-methyl-3-( X )-2 H -azirine][(2 S )-2-ethyl-2-methyl-3-( X )-2 H -azirine]palladium(II), where X  = N -{[(1 S ,2 S ,5 S )-6,6-dimethylbicyclo[3.1.1]heptan-2-yl]methyl}- N -phenylamino, [PdCl 2 (C 21 H 30 N 2 ) 2 ], 14 , have been determined and the geometries of the azirine rings compared with those of 11 other 3-amino-2 H -azirine structures reported in the literature. Most notable is the very long formal N—C single bond, which is, with one exception, around 1.57 Å. Each compound has crystallized in a chiral space group. The Pd atom in the trans -PdCl 2 complex is coordinated by one of each of the pair of diastereoisomers, while both of the diastereoisomers share the same crystallographic site in the structure of 11 ; this property thereby manifesting itself as disorder. The chosen crystal of 12 is either an inversion twin or composed of a pure enantiomorph, but this could not be established specifically.</abstract><doi>10.1107/S2053229623001468</doi><tpages>8</tpages><orcidid>https://orcid.org/0000-0002-5145-4251</orcidid><orcidid>https://orcid.org/0000-0002-9343-9180</orcidid></addata></record>
fulltext fulltext
identifier ISSN: 2053-2296
ispartof Acta crystallographica. Section C, Structural chemistry, 2023-03, Vol.79 (3), p.104-111
issn 2053-2296
2053-2296
language eng
recordid cdi_crossref_primary_10_1107_S2053229623001468
source Wiley Online Library Journals Frontfile Complete; Alma/SFX Local Collection
title Synthesis and crystal structures of new chiral 3-amino-2 H -azirines and the Pd complex of one of them
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-11T06%3A46%3A50IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-crossref&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Synthesis%20and%20crystal%20structures%20of%20new%20chiral%203-amino-2%20H%20-azirines%20and%20the%20Pd%20complex%20of%20one%20of%20them&rft.jtitle=Acta%20crystallographica.%20Section%20C,%20Structural%20chemistry&rft.au=Linden,%20Anthony&rft.date=2023-03-01&rft.volume=79&rft.issue=3&rft.spage=104&rft.epage=111&rft.pages=104-111&rft.issn=2053-2296&rft.eissn=2053-2296&rft_id=info:doi/10.1107/S2053229623001468&rft_dat=%3Ccrossref%3E10_1107_S2053229623001468%3C/crossref%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true