Databases for Protein-Ligand Complexes

Recent advances in experimental techniques have led to an enormous explosion of available data about protein–ligand complexes. To exploit the information that is hidden in these large data, collection tools for managing and accessing huge data collections are needed. This paper discusses databases f...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Acta crystallographica. Section D, Biological crystallography. Biological crystallography., 1998-11, Vol.54 (6-1), p.1178-1182
1. Verfasser: Hendlich, Manfred
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 1182
container_issue 6-1
container_start_page 1178
container_title Acta crystallographica. Section D, Biological crystallography.
container_volume 54
creator Hendlich, Manfred
description Recent advances in experimental techniques have led to an enormous explosion of available data about protein–ligand complexes. To exploit the information that is hidden in these large data, collection tools for managing and accessing huge data collections are needed. This paper discusses databases for protein–ligand data which are accessible via the World Wide Web. A strong focus is placed on the ReLiBase database system which is a new three‐dimensional database for storing and analysing structures of protein–ligand complexes currently deposited in the Brookhaven Protein Data Bank (PDB). ReLiBase contains efficient query tools for identifying and analysing ligands and protein–ligand complexes. Its application for structure‐based drug design is illustrated.
doi_str_mv 10.1107/S0907444998007124
format Article
fullrecord <record><control><sourceid>wiley_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1107_S0907444998007124</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>AYDBA0006</sourcerecordid><originalsourceid>FETCH-LOGICAL-c3966-54da65f4d4374820633495265414225cf57a5a3c9dd6e1b2dd4e4c75bb969f203</originalsourceid><addsrcrecordid>eNqFkMFKAzEURYMotlY_wI105W70JXlJJsva0SoUFayoq5CZZGS07QxJxfbvHRmRggtX7y7uuXAeIccUzigFdf4AGhQiap0CKMpwh_Qp1zoBQLW7lXvkIMY3AGCMq33SowCpRo19cprZlc1t9HFY1mF4H-qVr5bJtHq1Szcc14tm7tc-HpK90s6jP_q5A_J4dTkbXyfTu8nNeDRNCq6lTAQ6K0WJDrnClIHkHLVgUiBFxkRRCmWF5YV2TnqaM-fQY6FEnmupSwZ8QGi3W4Q6xuBL04RqYcPGUDDfzuaPc8ucdEzzkS-82yI6ybaQdoXPau43_y-a0Ut2MWq_JVs06dAqrvz6F7Xh3UjFlTBPtxOjZix71hmYGf8CmXhuBQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Databases for Protein-Ligand Complexes</title><source>MEDLINE</source><source>Crystallography Journals Online</source><source>Wiley Online Library Journals Frontfile Complete</source><source>Alma/SFX Local Collection</source><creator>Hendlich, Manfred</creator><creatorcontrib>Hendlich, Manfred</creatorcontrib><description>Recent advances in experimental techniques have led to an enormous explosion of available data about protein–ligand complexes. To exploit the information that is hidden in these large data, collection tools for managing and accessing huge data collections are needed. This paper discusses databases for protein–ligand data which are accessible via the World Wide Web. A strong focus is placed on the ReLiBase database system which is a new three‐dimensional database for storing and analysing structures of protein–ligand complexes currently deposited in the Brookhaven Protein Data Bank (PDB). ReLiBase contains efficient query tools for identifying and analysing ligands and protein–ligand complexes. Its application for structure‐based drug design is illustrated.</description><identifier>ISSN: 1399-0047</identifier><identifier>ISSN: 0907-4449</identifier><identifier>EISSN: 1399-0047</identifier><identifier>DOI: 10.1107/S0907444998007124</identifier><identifier>PMID: 10089494</identifier><language>eng</language><publisher>5 Abbey Square, Chester, Cheshire CH1 2HU, England: International Union of Crystallography</publisher><subject>Databases, Factual ; Ligands ; Protein Binding ; Proteins - metabolism</subject><ispartof>Acta crystallographica. Section D, Biological crystallography., 1998-11, Vol.54 (6-1), p.1178-1182</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3966-54da65f4d4374820633495265414225cf57a5a3c9dd6e1b2dd4e4c75bb969f203</citedby></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://onlinelibrary.wiley.com/doi/pdf/10.1107%2FS0907444998007124$$EPDF$$P50$$Gwiley$$H</linktopdf><linktohtml>$$Uhttps://onlinelibrary.wiley.com/doi/full/10.1107%2FS0907444998007124$$EHTML$$P50$$Gwiley$$H</linktohtml><link.rule.ids>314,776,780,1411,3973,27901,27902,45550,45551</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/10089494$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Hendlich, Manfred</creatorcontrib><title>Databases for Protein-Ligand Complexes</title><title>Acta crystallographica. Section D, Biological crystallography.</title><addtitle>Acta Cryst. D</addtitle><description>Recent advances in experimental techniques have led to an enormous explosion of available data about protein–ligand complexes. To exploit the information that is hidden in these large data, collection tools for managing and accessing huge data collections are needed. This paper discusses databases for protein–ligand data which are accessible via the World Wide Web. A strong focus is placed on the ReLiBase database system which is a new three‐dimensional database for storing and analysing structures of protein–ligand complexes currently deposited in the Brookhaven Protein Data Bank (PDB). ReLiBase contains efficient query tools for identifying and analysing ligands and protein–ligand complexes. Its application for structure‐based drug design is illustrated.</description><subject>Databases, Factual</subject><subject>Ligands</subject><subject>Protein Binding</subject><subject>Proteins - metabolism</subject><issn>1399-0047</issn><issn>0907-4449</issn><issn>1399-0047</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>1998</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNqFkMFKAzEURYMotlY_wI105W70JXlJJsva0SoUFayoq5CZZGS07QxJxfbvHRmRggtX7y7uuXAeIccUzigFdf4AGhQiap0CKMpwh_Qp1zoBQLW7lXvkIMY3AGCMq33SowCpRo19cprZlc1t9HFY1mF4H-qVr5bJtHq1Szcc14tm7tc-HpK90s6jP_q5A_J4dTkbXyfTu8nNeDRNCq6lTAQ6K0WJDrnClIHkHLVgUiBFxkRRCmWF5YV2TnqaM-fQY6FEnmupSwZ8QGi3W4Q6xuBL04RqYcPGUDDfzuaPc8ucdEzzkS-82yI6ybaQdoXPau43_y-a0Ut2MWq_JVs06dAqrvz6F7Xh3UjFlTBPtxOjZix71hmYGf8CmXhuBQ</recordid><startdate>19981101</startdate><enddate>19981101</enddate><creator>Hendlich, Manfred</creator><general>International Union of Crystallography</general><scope>BSCLL</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>19981101</creationdate><title>Databases for Protein-Ligand Complexes</title><author>Hendlich, Manfred</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3966-54da65f4d4374820633495265414225cf57a5a3c9dd6e1b2dd4e4c75bb969f203</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>1998</creationdate><topic>Databases, Factual</topic><topic>Ligands</topic><topic>Protein Binding</topic><topic>Proteins - metabolism</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Hendlich, Manfred</creatorcontrib><collection>Istex</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><jtitle>Acta crystallographica. Section D, Biological crystallography.</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Hendlich, Manfred</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Databases for Protein-Ligand Complexes</atitle><jtitle>Acta crystallographica. Section D, Biological crystallography.</jtitle><addtitle>Acta Cryst. D</addtitle><date>1998-11-01</date><risdate>1998</risdate><volume>54</volume><issue>6-1</issue><spage>1178</spage><epage>1182</epage><pages>1178-1182</pages><issn>1399-0047</issn><issn>0907-4449</issn><eissn>1399-0047</eissn><abstract>Recent advances in experimental techniques have led to an enormous explosion of available data about protein–ligand complexes. To exploit the information that is hidden in these large data, collection tools for managing and accessing huge data collections are needed. This paper discusses databases for protein–ligand data which are accessible via the World Wide Web. A strong focus is placed on the ReLiBase database system which is a new three‐dimensional database for storing and analysing structures of protein–ligand complexes currently deposited in the Brookhaven Protein Data Bank (PDB). ReLiBase contains efficient query tools for identifying and analysing ligands and protein–ligand complexes. Its application for structure‐based drug design is illustrated.</abstract><cop>5 Abbey Square, Chester, Cheshire CH1 2HU, England</cop><pub>International Union of Crystallography</pub><pmid>10089494</pmid><doi>10.1107/S0907444998007124</doi><tpages>5</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1399-0047
ispartof Acta crystallographica. Section D, Biological crystallography., 1998-11, Vol.54 (6-1), p.1178-1182
issn 1399-0047
0907-4449
1399-0047
language eng
recordid cdi_crossref_primary_10_1107_S0907444998007124
source MEDLINE; Crystallography Journals Online; Wiley Online Library Journals Frontfile Complete; Alma/SFX Local Collection
subjects Databases, Factual
Ligands
Protein Binding
Proteins - metabolism
title Databases for Protein-Ligand Complexes
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-28T23%3A50%3A15IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-wiley_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Databases%20for%20Protein-Ligand%20Complexes&rft.jtitle=Acta%20crystallographica.%20Section%20D,%20Biological%20crystallography.&rft.au=Hendlich,%20Manfred&rft.date=1998-11-01&rft.volume=54&rft.issue=6-1&rft.spage=1178&rft.epage=1182&rft.pages=1178-1182&rft.issn=1399-0047&rft.eissn=1399-0047&rft_id=info:doi/10.1107/S0907444998007124&rft_dat=%3Cwiley_cross%3EAYDBA0006%3C/wiley_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/10089494&rfr_iscdi=true