Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage: A Correction to this article was published on 14 August 2023
Two strains of Chryseobacterium identified from different experiments are proposed to represent new species. Strain WLa1L2M3 T was isolated from the digestive tract of an Oryctes rhinoceros beetle larva. Strain 09-1422 T was isolated from a cage housing the stick insect Eurycantha calcarata . Sequen...
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| Veröffentlicht in: | International journal of systematic and evolutionary microbiology 2023-04, Vol.73 (4) |
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| creator | Shelomi, Matan Han, Chiao-Jung Chen, Wen-Ming Chen, Hsin-Kuang Liaw, Shwu-Jen Mühle, Estelle Clermont, Dominique |
| description | Two strains of
Chryseobacterium
identified from different experiments are proposed to represent new species. Strain WLa1L2M3
T
was isolated from the digestive tract of an
Oryctes rhinoceros
beetle larva. Strain 09-1422
T
was isolated from a cage housing the stick insect
Eurycantha calcarata
. Sequence analysis of the 16S rRNA and
rpoB
genes found both strains to be similar but not identical to other
Chryseobacterium
species. Whole-genome sequencing suggested the isolates represent new species, with average nucleotide identity values ranging from 74.6 to 80.5 %. Genome-to-genome distance calculations produced values below 25.3 %, and digital DNA–DNA hybridization values were 13.7–29.9 %, all suggesting they are distinct species. The genomic DNA G+C content of WLa1L2M3
T
is approximately 32.53 %, and of 09-1422
T
is approximately 35.89 %. The predominant cellular fatty acids of strain WLa1L2M3
T
are C
15 : 0
iso, summed feature 9 (C
16 : 0
10OH or C
17 : 1
iso ω6
c
), C
17 : 0
iso 3OH, summed feature 3 (C
16 : 1
ω7
c
and/or C
16 : 1
ω6c), C
15 : 0
iso 3OH, C
15 : 0
anteiso and C
13 : 0
iso, and those of strain 09-1422
T
are C
15 : 0
iso, summed feature 3 (C
16 : 1
ω7c and/or C
16 : 1
ω6
c
), C
17 : 0
iso 3OH, C
15 : 0
anteiso, C
15 : 0
iso 3OH, C
16 : 1
ω7
c
, C
17 : 0
2OH and C
18 : 0
. In addition, physiological and biochemical tests revealed phenotypic differences from related
Chryseobacterium
type strains. These cumulative data indicate that the two strains represent novel species of the genus
Chryseobacterium
for which the names
Chryseobacterium oryctis
sp. nov. and
Chryseobacterium kimseyorum
sp. nov. are proposed with WLa1L2M3
T
(=BCRC 81350
T
=JCM 35215
T
=CIP 112035
T
) and 09-1422
T
(=UCDFST 09-1422
T
=BCRC 81359
T
=CIP 112165
T
), as type strains, respectively. |
| doi_str_mv | 10.1099/ijsem.0.005813 |
| format | Article |
| fullrecord | <record><control><sourceid>crossref</sourceid><recordid>TN_cdi_crossref_primary_10_1099_ijsem_0_005813</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>10_1099_ijsem_0_005813</sourcerecordid><originalsourceid>FETCH-crossref_primary_10_1099_ijsem_0_0058133</originalsourceid><addsrcrecordid>eNqVkLtOAzEQRS0EEuHRUs8HJGbMJitSRyA6GnrLcWZ3naztaMZB2p_iG9kERIMoqOZopHuvdJS6M6gNLpf3YSsUNWrExaOpztTEzOt6tsBqfv7DD_WluhLZIo4PxIn6WHU8COW184U4HCJkHnwJArLXkPK7nkKQ3LtCG2g4RygdQXsokJsTrolKT_B6TJEAdyFlT5xlCi5t4Ff9LkShIfOIfy04kBL8DkIS8gWYHIfUgnct3aiLxvVCt9_3Wunnp7fVy8yPi8LU2D2H6HiwBu3Rij1ZsWi_rFT_DnwCK45vvA</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage: A Correction to this article was published on 14 August 2023</title><source>Microbiology Society</source><source>EZB-FREE-00999 freely available EZB journals</source><source>Alma/SFX Local Collection</source><creator>Shelomi, Matan ; Han, Chiao-Jung ; Chen, Wen-Ming ; Chen, Hsin-Kuang ; Liaw, Shwu-Jen ; Mühle, Estelle ; Clermont, Dominique</creator><creatorcontrib>Shelomi, Matan ; Han, Chiao-Jung ; Chen, Wen-Ming ; Chen, Hsin-Kuang ; Liaw, Shwu-Jen ; Mühle, Estelle ; Clermont, Dominique</creatorcontrib><description>Two strains of
Chryseobacterium
identified from different experiments are proposed to represent new species. Strain WLa1L2M3
T
was isolated from the digestive tract of an
Oryctes rhinoceros
beetle larva. Strain 09-1422
T
was isolated from a cage housing the stick insect
Eurycantha calcarata
. Sequence analysis of the 16S rRNA and
rpoB
genes found both strains to be similar but not identical to other
Chryseobacterium
species. Whole-genome sequencing suggested the isolates represent new species, with average nucleotide identity values ranging from 74.6 to 80.5 %. Genome-to-genome distance calculations produced values below 25.3 %, and digital DNA–DNA hybridization values were 13.7–29.9 %, all suggesting they are distinct species. The genomic DNA G+C content of WLa1L2M3
T
is approximately 32.53 %, and of 09-1422
T
is approximately 35.89 %. The predominant cellular fatty acids of strain WLa1L2M3
T
are C
15 : 0
iso, summed feature 9 (C
16 : 0
10OH or C
17 : 1
iso ω6
c
), C
17 : 0
iso 3OH, summed feature 3 (C
16 : 1
ω7
c
and/or C
16 : 1
ω6c), C
15 : 0
iso 3OH, C
15 : 0
anteiso and C
13 : 0
iso, and those of strain 09-1422
T
are C
15 : 0
iso, summed feature 3 (C
16 : 1
ω7c and/or C
16 : 1
ω6
c
), C
17 : 0
iso 3OH, C
15 : 0
anteiso, C
15 : 0
iso 3OH, C
16 : 1
ω7
c
, C
17 : 0
2OH and C
18 : 0
. In addition, physiological and biochemical tests revealed phenotypic differences from related
Chryseobacterium
type strains. These cumulative data indicate that the two strains represent novel species of the genus
Chryseobacterium
for which the names
Chryseobacterium oryctis
sp. nov. and
Chryseobacterium kimseyorum
sp. nov. are proposed with WLa1L2M3
T
(=BCRC 81350
T
=JCM 35215
T
=CIP 112035
T
) and 09-1422
T
(=UCDFST 09-1422
T
=BCRC 81359
T
=CIP 112165
T
), as type strains, respectively.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.005813</identifier><language>eng</language><ispartof>International journal of systematic and evolutionary microbiology, 2023-04, Vol.73 (4)</ispartof><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-crossref_primary_10_1099_ijsem_0_0058133</cites><orcidid>0000-0002-9356-8150 ; 0000-0003-4413-4097</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>315,781,785,3747,27929,27930</link.rule.ids></links><search><creatorcontrib>Shelomi, Matan</creatorcontrib><creatorcontrib>Han, Chiao-Jung</creatorcontrib><creatorcontrib>Chen, Wen-Ming</creatorcontrib><creatorcontrib>Chen, Hsin-Kuang</creatorcontrib><creatorcontrib>Liaw, Shwu-Jen</creatorcontrib><creatorcontrib>Mühle, Estelle</creatorcontrib><creatorcontrib>Clermont, Dominique</creatorcontrib><title>Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage: A Correction to this article was published on 14 August 2023</title><title>International journal of systematic and evolutionary microbiology</title><description>Two strains of
Chryseobacterium
identified from different experiments are proposed to represent new species. Strain WLa1L2M3
T
was isolated from the digestive tract of an
Oryctes rhinoceros
beetle larva. Strain 09-1422
T
was isolated from a cage housing the stick insect
Eurycantha calcarata
. Sequence analysis of the 16S rRNA and
rpoB
genes found both strains to be similar but not identical to other
Chryseobacterium
species. Whole-genome sequencing suggested the isolates represent new species, with average nucleotide identity values ranging from 74.6 to 80.5 %. Genome-to-genome distance calculations produced values below 25.3 %, and digital DNA–DNA hybridization values were 13.7–29.9 %, all suggesting they are distinct species. The genomic DNA G+C content of WLa1L2M3
T
is approximately 32.53 %, and of 09-1422
T
is approximately 35.89 %. The predominant cellular fatty acids of strain WLa1L2M3
T
are C
15 : 0
iso, summed feature 9 (C
16 : 0
10OH or C
17 : 1
iso ω6
c
), C
17 : 0
iso 3OH, summed feature 3 (C
16 : 1
ω7
c
and/or C
16 : 1
ω6c), C
15 : 0
iso 3OH, C
15 : 0
anteiso and C
13 : 0
iso, and those of strain 09-1422
T
are C
15 : 0
iso, summed feature 3 (C
16 : 1
ω7c and/or C
16 : 1
ω6
c
), C
17 : 0
iso 3OH, C
15 : 0
anteiso, C
15 : 0
iso 3OH, C
16 : 1
ω7
c
, C
17 : 0
2OH and C
18 : 0
. In addition, physiological and biochemical tests revealed phenotypic differences from related
Chryseobacterium
type strains. These cumulative data indicate that the two strains represent novel species of the genus
Chryseobacterium
for which the names
Chryseobacterium oryctis
sp. nov. and
Chryseobacterium kimseyorum
sp. nov. are proposed with WLa1L2M3
T
(=BCRC 81350
T
=JCM 35215
T
=CIP 112035
T
) and 09-1422
T
(=UCDFST 09-1422
T
=BCRC 81359
T
=CIP 112165
T
), as type strains, respectively.</description><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><recordid>eNqVkLtOAzEQRS0EEuHRUs8HJGbMJitSRyA6GnrLcWZ3naztaMZB2p_iG9kERIMoqOZopHuvdJS6M6gNLpf3YSsUNWrExaOpztTEzOt6tsBqfv7DD_WluhLZIo4PxIn6WHU8COW184U4HCJkHnwJArLXkPK7nkKQ3LtCG2g4RygdQXsokJsTrolKT_B6TJEAdyFlT5xlCi5t4Ff9LkShIfOIfy04kBL8DkIS8gWYHIfUgnct3aiLxvVCt9_3Wunnp7fVy8yPi8LU2D2H6HiwBu3Rij1ZsWi_rFT_DnwCK45vvA</recordid><startdate>20230419</startdate><enddate>20230419</enddate><creator>Shelomi, Matan</creator><creator>Han, Chiao-Jung</creator><creator>Chen, Wen-Ming</creator><creator>Chen, Hsin-Kuang</creator><creator>Liaw, Shwu-Jen</creator><creator>Mühle, Estelle</creator><creator>Clermont, Dominique</creator><scope>AAYXX</scope><scope>CITATION</scope><orcidid>https://orcid.org/0000-0002-9356-8150</orcidid><orcidid>https://orcid.org/0000-0003-4413-4097</orcidid></search><sort><creationdate>20230419</creationdate><title>Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage</title><author>Shelomi, Matan ; Han, Chiao-Jung ; Chen, Wen-Ming ; Chen, Hsin-Kuang ; Liaw, Shwu-Jen ; Mühle, Estelle ; Clermont, Dominique</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-crossref_primary_10_1099_ijsem_0_0058133</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Shelomi, Matan</creatorcontrib><creatorcontrib>Han, Chiao-Jung</creatorcontrib><creatorcontrib>Chen, Wen-Ming</creatorcontrib><creatorcontrib>Chen, Hsin-Kuang</creatorcontrib><creatorcontrib>Liaw, Shwu-Jen</creatorcontrib><creatorcontrib>Mühle, Estelle</creatorcontrib><creatorcontrib>Clermont, Dominique</creatorcontrib><collection>CrossRef</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Shelomi, Matan</au><au>Han, Chiao-Jung</au><au>Chen, Wen-Ming</au><au>Chen, Hsin-Kuang</au><au>Liaw, Shwu-Jen</au><au>Mühle, Estelle</au><au>Clermont, Dominique</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage: A Correction to this article was published on 14 August 2023</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><date>2023-04-19</date><risdate>2023</risdate><volume>73</volume><issue>4</issue><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>Two strains of
Chryseobacterium
identified from different experiments are proposed to represent new species. Strain WLa1L2M3
T
was isolated from the digestive tract of an
Oryctes rhinoceros
beetle larva. Strain 09-1422
T
was isolated from a cage housing the stick insect
Eurycantha calcarata
. Sequence analysis of the 16S rRNA and
rpoB
genes found both strains to be similar but not identical to other
Chryseobacterium
species. Whole-genome sequencing suggested the isolates represent new species, with average nucleotide identity values ranging from 74.6 to 80.5 %. Genome-to-genome distance calculations produced values below 25.3 %, and digital DNA–DNA hybridization values were 13.7–29.9 %, all suggesting they are distinct species. The genomic DNA G+C content of WLa1L2M3
T
is approximately 32.53 %, and of 09-1422
T
is approximately 35.89 %. The predominant cellular fatty acids of strain WLa1L2M3
T
are C
15 : 0
iso, summed feature 9 (C
16 : 0
10OH or C
17 : 1
iso ω6
c
), C
17 : 0
iso 3OH, summed feature 3 (C
16 : 1
ω7
c
and/or C
16 : 1
ω6c), C
15 : 0
iso 3OH, C
15 : 0
anteiso and C
13 : 0
iso, and those of strain 09-1422
T
are C
15 : 0
iso, summed feature 3 (C
16 : 1
ω7c and/or C
16 : 1
ω6
c
), C
17 : 0
iso 3OH, C
15 : 0
anteiso, C
15 : 0
iso 3OH, C
16 : 1
ω7
c
, C
17 : 0
2OH and C
18 : 0
. In addition, physiological and biochemical tests revealed phenotypic differences from related
Chryseobacterium
type strains. These cumulative data indicate that the two strains represent novel species of the genus
Chryseobacterium
for which the names
Chryseobacterium oryctis
sp. nov. and
Chryseobacterium kimseyorum
sp. nov. are proposed with WLa1L2M3
T
(=BCRC 81350
T
=JCM 35215
T
=CIP 112035
T
) and 09-1422
T
(=UCDFST 09-1422
T
=BCRC 81359
T
=CIP 112165
T
), as type strains, respectively.</abstract><doi>10.1099/ijsem.0.005813</doi><orcidid>https://orcid.org/0000-0002-9356-8150</orcidid><orcidid>https://orcid.org/0000-0003-4413-4097</orcidid></addata></record> |
| fulltext | fulltext |
| identifier | ISSN: 1466-5026 |
| ispartof | International journal of systematic and evolutionary microbiology, 2023-04, Vol.73 (4) |
| issn | 1466-5026 1466-5034 |
| language | eng |
| recordid | cdi_crossref_primary_10_1099_ijsem_0_005813 |
| source | Microbiology Society; EZB-FREE-00999 freely available EZB journals; Alma/SFX Local Collection |
| title | Chryseobacterium oryctis sp. nov., isolated from the gut of the beetle Oryctes rhinoceros, and Chryseobacterium kimseyorum sp. nov., isolated from a stick insect rearing cage: A Correction to this article was published on 14 August 2023 |
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