Amazoninema gen. nov., (Synechococcales, Pseudanabaenaceae) a novel cyanobacteria genus from Brazilian Amazonian rivers

The genus Leptolyngbya includes morphotypes with thin cells and simple morphology, and is one of the most common cyanobacterial genera found in a wide range of environments. In many cases, however, the morphotypes assigned to this genus do not share a common ancestor based on 16S rRNA gene phylogeny...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:International journal of systematic and evolutionary microbiology 2018-07, Vol.68 (7), p.2249-2257
Hauptverfasser: Genuário, Diego Bonaldo, de Souza, Wallace Rafael, Monteiro, Regina Teresa Rosin, Sant Anna, Célia Leite, Melo, Itamar Soares
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page 2257
container_issue 7
container_start_page 2249
container_title International journal of systematic and evolutionary microbiology
container_volume 68
creator Genuário, Diego Bonaldo
de Souza, Wallace Rafael
Monteiro, Regina Teresa Rosin
Sant Anna, Célia Leite
Melo, Itamar Soares
description The genus Leptolyngbya includes morphotypes with thin cells and simple morphology, and is one of the most common cyanobacterial genera found in a wide range of environments. In many cases, however, the morphotypes assigned to this genus do not share a common ancestor based on 16S rRNA gene phylogeny, which has led to the description of novel genera, such as Nodosilinea, Oculatella, Pantanalinema, Alkalinema, Thermoleptolyngbya, Onodrimia, Timaviella and Toxifilum. Thus, four novel isolates, with a comparable morphology to Leptolyngbya, were recovered from the Amazon and Solimões rivers. The novel 16S rRNA gene sequences obtained from these strains were placed together as a new and distinct phylogenetic lineage that is more closely related to the clusters embracing the genera Nodosilinea, Haloleptolyngbya and Halomicronema than to the genus Leptolyngbya. Additionally, these novel 16S rRNA gene sequences showed similarity values lower than 95 % compared with those from the most phylogenetic related groups and/or established genera. Altogether, these results supported the erection of a novel genus, named Amazoninema, to accommodate the novel isolates. Likewise, a comparison of their 16S rRNA gene sequences revealed similarities higher than 99.8 %, indicating that they belong to a single species, which was corroborated by analysing their 16S-23S internal transcribed spacer regions and unique Box-B helix pattern. Few studies have been undertaken to uncover the cultured diversity of cyanobacteria from Amazonia, and to our knowledge, this is the first cyanobacteria genus erected, considering morphotypes isolated exclusively from Brazilian Amazonian rivers.
doi_str_mv 10.1099/ijsem.0.002821
format Article
fullrecord <record><control><sourceid>pubmed_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1099_ijsem_0_002821</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>29869977</sourcerecordid><originalsourceid>FETCH-LOGICAL-c335t-6c13eb52d60164b345ccc6c66159f2404f27f627b60ea11b7b48e127cb60a2c73</originalsourceid><addsrcrecordid>eNo9kM1Lw0AQxRdRbK1ePcoeFZq4u0k2zbEWv6CgoJ7D7HSiKcmm7DaV9q83_bCneTzeewM_xq6lCKXIsvty7qkORSiEGil5wvoy1jpIRBSfHrXSPXbh_VyIzhDinPVUNtJZlqZ99juuYdPY0lIN_JtsyG2zCof89mNtCX8abBChIj_k757aGVgwQBaQgO44bMNUcVyDbQzgkly5W2k9L1xT8wcHm7IqwfLDm065ckXOX7KzAipPV4c7YF9Pj5-Tl2D69vw6GU8DjKJkGWiUEZlEzbSQOjZRnCCiRq1lkhUqFnGh0kKr1GhBIKVJTTwiqVLsDFCYRgMW7nfRNd47KvKFK2tw61yKfEsw3xHMRb4n2BVu9oVFa2qaHeP_yKI_WrJucQ</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Amazoninema gen. nov., (Synechococcales, Pseudanabaenaceae) a novel cyanobacteria genus from Brazilian Amazonian rivers</title><source>MEDLINE</source><source>Microbiology Society</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Alma/SFX Local Collection</source><creator>Genuário, Diego Bonaldo ; de Souza, Wallace Rafael ; Monteiro, Regina Teresa Rosin ; Sant Anna, Célia Leite ; Melo, Itamar Soares</creator><creatorcontrib>Genuário, Diego Bonaldo ; de Souza, Wallace Rafael ; Monteiro, Regina Teresa Rosin ; Sant Anna, Célia Leite ; Melo, Itamar Soares</creatorcontrib><description>The genus Leptolyngbya includes morphotypes with thin cells and simple morphology, and is one of the most common cyanobacterial genera found in a wide range of environments. In many cases, however, the morphotypes assigned to this genus do not share a common ancestor based on 16S rRNA gene phylogeny, which has led to the description of novel genera, such as Nodosilinea, Oculatella, Pantanalinema, Alkalinema, Thermoleptolyngbya, Onodrimia, Timaviella and Toxifilum. Thus, four novel isolates, with a comparable morphology to Leptolyngbya, were recovered from the Amazon and Solimões rivers. The novel 16S rRNA gene sequences obtained from these strains were placed together as a new and distinct phylogenetic lineage that is more closely related to the clusters embracing the genera Nodosilinea, Haloleptolyngbya and Halomicronema than to the genus Leptolyngbya. Additionally, these novel 16S rRNA gene sequences showed similarity values lower than 95 % compared with those from the most phylogenetic related groups and/or established genera. Altogether, these results supported the erection of a novel genus, named Amazoninema, to accommodate the novel isolates. Likewise, a comparison of their 16S rRNA gene sequences revealed similarities higher than 99.8 %, indicating that they belong to a single species, which was corroborated by analysing their 16S-23S internal transcribed spacer regions and unique Box-B helix pattern. Few studies have been undertaken to uncover the cultured diversity of cyanobacteria from Amazonia, and to our knowledge, this is the first cyanobacteria genus erected, considering morphotypes isolated exclusively from Brazilian Amazonian rivers.</description><identifier>ISSN: 1466-5026</identifier><identifier>EISSN: 1466-5034</identifier><identifier>DOI: 10.1099/ijsem.0.002821</identifier><identifier>PMID: 29869977</identifier><language>eng</language><publisher>England</publisher><subject>Bacterial Typing Techniques ; Base Composition ; Brazil ; Cyanobacteria - classification ; Cyanobacteria - genetics ; Cyanobacteria - isolation &amp; purification ; DNA, Bacterial - genetics ; DNA, Ribosomal Spacer - genetics ; Genes, Bacterial ; Phylogeny ; Rivers - microbiology ; RNA, Ribosomal, 16S - genetics ; Sequence Analysis, DNA</subject><ispartof>International journal of systematic and evolutionary microbiology, 2018-07, Vol.68 (7), p.2249-2257</ispartof><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c335t-6c13eb52d60164b345ccc6c66159f2404f27f627b60ea11b7b48e127cb60a2c73</citedby><cites>FETCH-LOGICAL-c335t-6c13eb52d60164b345ccc6c66159f2404f27f627b60ea11b7b48e127cb60a2c73</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,3733,27901,27902</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/29869977$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Genuário, Diego Bonaldo</creatorcontrib><creatorcontrib>de Souza, Wallace Rafael</creatorcontrib><creatorcontrib>Monteiro, Regina Teresa Rosin</creatorcontrib><creatorcontrib>Sant Anna, Célia Leite</creatorcontrib><creatorcontrib>Melo, Itamar Soares</creatorcontrib><title>Amazoninema gen. nov., (Synechococcales, Pseudanabaenaceae) a novel cyanobacteria genus from Brazilian Amazonian rivers</title><title>International journal of systematic and evolutionary microbiology</title><addtitle>Int J Syst Evol Microbiol</addtitle><description>The genus Leptolyngbya includes morphotypes with thin cells and simple morphology, and is one of the most common cyanobacterial genera found in a wide range of environments. In many cases, however, the morphotypes assigned to this genus do not share a common ancestor based on 16S rRNA gene phylogeny, which has led to the description of novel genera, such as Nodosilinea, Oculatella, Pantanalinema, Alkalinema, Thermoleptolyngbya, Onodrimia, Timaviella and Toxifilum. Thus, four novel isolates, with a comparable morphology to Leptolyngbya, were recovered from the Amazon and Solimões rivers. The novel 16S rRNA gene sequences obtained from these strains were placed together as a new and distinct phylogenetic lineage that is more closely related to the clusters embracing the genera Nodosilinea, Haloleptolyngbya and Halomicronema than to the genus Leptolyngbya. Additionally, these novel 16S rRNA gene sequences showed similarity values lower than 95 % compared with those from the most phylogenetic related groups and/or established genera. Altogether, these results supported the erection of a novel genus, named Amazoninema, to accommodate the novel isolates. Likewise, a comparison of their 16S rRNA gene sequences revealed similarities higher than 99.8 %, indicating that they belong to a single species, which was corroborated by analysing their 16S-23S internal transcribed spacer regions and unique Box-B helix pattern. Few studies have been undertaken to uncover the cultured diversity of cyanobacteria from Amazonia, and to our knowledge, this is the first cyanobacteria genus erected, considering morphotypes isolated exclusively from Brazilian Amazonian rivers.</description><subject>Bacterial Typing Techniques</subject><subject>Base Composition</subject><subject>Brazil</subject><subject>Cyanobacteria - classification</subject><subject>Cyanobacteria - genetics</subject><subject>Cyanobacteria - isolation &amp; purification</subject><subject>DNA, Bacterial - genetics</subject><subject>DNA, Ribosomal Spacer - genetics</subject><subject>Genes, Bacterial</subject><subject>Phylogeny</subject><subject>Rivers - microbiology</subject><subject>RNA, Ribosomal, 16S - genetics</subject><subject>Sequence Analysis, DNA</subject><issn>1466-5026</issn><issn>1466-5034</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2018</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNo9kM1Lw0AQxRdRbK1ePcoeFZq4u0k2zbEWv6CgoJ7D7HSiKcmm7DaV9q83_bCneTzeewM_xq6lCKXIsvty7qkORSiEGil5wvoy1jpIRBSfHrXSPXbh_VyIzhDinPVUNtJZlqZ99juuYdPY0lIN_JtsyG2zCof89mNtCX8abBChIj_k757aGVgwQBaQgO44bMNUcVyDbQzgkly5W2k9L1xT8wcHm7IqwfLDm065ckXOX7KzAipPV4c7YF9Pj5-Tl2D69vw6GU8DjKJkGWiUEZlEzbSQOjZRnCCiRq1lkhUqFnGh0kKr1GhBIKVJTTwiqVLsDFCYRgMW7nfRNd47KvKFK2tw61yKfEsw3xHMRb4n2BVu9oVFa2qaHeP_yKI_WrJucQ</recordid><startdate>201807</startdate><enddate>201807</enddate><creator>Genuário, Diego Bonaldo</creator><creator>de Souza, Wallace Rafael</creator><creator>Monteiro, Regina Teresa Rosin</creator><creator>Sant Anna, Célia Leite</creator><creator>Melo, Itamar Soares</creator><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>201807</creationdate><title>Amazoninema gen. nov., (Synechococcales, Pseudanabaenaceae) a novel cyanobacteria genus from Brazilian Amazonian rivers</title><author>Genuário, Diego Bonaldo ; de Souza, Wallace Rafael ; Monteiro, Regina Teresa Rosin ; Sant Anna, Célia Leite ; Melo, Itamar Soares</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c335t-6c13eb52d60164b345ccc6c66159f2404f27f627b60ea11b7b48e127cb60a2c73</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2018</creationdate><topic>Bacterial Typing Techniques</topic><topic>Base Composition</topic><topic>Brazil</topic><topic>Cyanobacteria - classification</topic><topic>Cyanobacteria - genetics</topic><topic>Cyanobacteria - isolation &amp; purification</topic><topic>DNA, Bacterial - genetics</topic><topic>DNA, Ribosomal Spacer - genetics</topic><topic>Genes, Bacterial</topic><topic>Phylogeny</topic><topic>Rivers - microbiology</topic><topic>RNA, Ribosomal, 16S - genetics</topic><topic>Sequence Analysis, DNA</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Genuário, Diego Bonaldo</creatorcontrib><creatorcontrib>de Souza, Wallace Rafael</creatorcontrib><creatorcontrib>Monteiro, Regina Teresa Rosin</creatorcontrib><creatorcontrib>Sant Anna, Célia Leite</creatorcontrib><creatorcontrib>Melo, Itamar Soares</creatorcontrib><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><jtitle>International journal of systematic and evolutionary microbiology</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Genuário, Diego Bonaldo</au><au>de Souza, Wallace Rafael</au><au>Monteiro, Regina Teresa Rosin</au><au>Sant Anna, Célia Leite</au><au>Melo, Itamar Soares</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Amazoninema gen. nov., (Synechococcales, Pseudanabaenaceae) a novel cyanobacteria genus from Brazilian Amazonian rivers</atitle><jtitle>International journal of systematic and evolutionary microbiology</jtitle><addtitle>Int J Syst Evol Microbiol</addtitle><date>2018-07</date><risdate>2018</risdate><volume>68</volume><issue>7</issue><spage>2249</spage><epage>2257</epage><pages>2249-2257</pages><issn>1466-5026</issn><eissn>1466-5034</eissn><abstract>The genus Leptolyngbya includes morphotypes with thin cells and simple morphology, and is one of the most common cyanobacterial genera found in a wide range of environments. In many cases, however, the morphotypes assigned to this genus do not share a common ancestor based on 16S rRNA gene phylogeny, which has led to the description of novel genera, such as Nodosilinea, Oculatella, Pantanalinema, Alkalinema, Thermoleptolyngbya, Onodrimia, Timaviella and Toxifilum. Thus, four novel isolates, with a comparable morphology to Leptolyngbya, were recovered from the Amazon and Solimões rivers. The novel 16S rRNA gene sequences obtained from these strains were placed together as a new and distinct phylogenetic lineage that is more closely related to the clusters embracing the genera Nodosilinea, Haloleptolyngbya and Halomicronema than to the genus Leptolyngbya. Additionally, these novel 16S rRNA gene sequences showed similarity values lower than 95 % compared with those from the most phylogenetic related groups and/or established genera. Altogether, these results supported the erection of a novel genus, named Amazoninema, to accommodate the novel isolates. Likewise, a comparison of their 16S rRNA gene sequences revealed similarities higher than 99.8 %, indicating that they belong to a single species, which was corroborated by analysing their 16S-23S internal transcribed spacer regions and unique Box-B helix pattern. Few studies have been undertaken to uncover the cultured diversity of cyanobacteria from Amazonia, and to our knowledge, this is the first cyanobacteria genus erected, considering morphotypes isolated exclusively from Brazilian Amazonian rivers.</abstract><cop>England</cop><pmid>29869977</pmid><doi>10.1099/ijsem.0.002821</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1466-5026
ispartof International journal of systematic and evolutionary microbiology, 2018-07, Vol.68 (7), p.2249-2257
issn 1466-5026
1466-5034
language eng
recordid cdi_crossref_primary_10_1099_ijsem_0_002821
source MEDLINE; Microbiology Society; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Alma/SFX Local Collection
subjects Bacterial Typing Techniques
Base Composition
Brazil
Cyanobacteria - classification
Cyanobacteria - genetics
Cyanobacteria - isolation & purification
DNA, Bacterial - genetics
DNA, Ribosomal Spacer - genetics
Genes, Bacterial
Phylogeny
Rivers - microbiology
RNA, Ribosomal, 16S - genetics
Sequence Analysis, DNA
title Amazoninema gen. nov., (Synechococcales, Pseudanabaenaceae) a novel cyanobacteria genus from Brazilian Amazonian rivers
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-02-03T11%3A21%3A07IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-pubmed_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Amazoninema%20gen.%20nov.,%20(Synechococcales,%20Pseudanabaenaceae)%20a%20novel%20cyanobacteria%20genus%20from%20Brazilian%20Amazonian%20rivers&rft.jtitle=International%20journal%20of%20systematic%20and%20evolutionary%20microbiology&rft.au=Genu%C3%A1rio,%20Diego%20Bonaldo&rft.date=2018-07&rft.volume=68&rft.issue=7&rft.spage=2249&rft.epage=2257&rft.pages=2249-2257&rft.issn=1466-5026&rft.eissn=1466-5034&rft_id=info:doi/10.1099/ijsem.0.002821&rft_dat=%3Cpubmed_cross%3E29869977%3C/pubmed_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/29869977&rfr_iscdi=true