Model establishment of prognostic-related immune genes in laryngeal squamous cell carcinoma

Background: Laryngeal squamous cell carcinoma (LSCC) is one of the most common malignant tumors of the head and neck in the world. At present, the treatment methods include surgery, radiotherapy, and chemotherapy, but the 5-year survival rate is still not ideal and the quality of life of the patient...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Medicine (Baltimore) 2021-01, Vol.100 (2), p.e24263-e24263, Article 24263
Hauptverfasser: Sun, Ming, Chen, Sihan, Fu, Min
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page e24263
container_issue 2
container_start_page e24263
container_title Medicine (Baltimore)
container_volume 100
creator Sun, Ming
Chen, Sihan
Fu, Min
description Background: Laryngeal squamous cell carcinoma (LSCC) is one of the most common malignant tumors of the head and neck in the world. At present, the treatment methods include surgery, radiotherapy, and chemotherapy, but the 5-year survival rate is still not ideal and the quality of life of the patients is low. Due to the relative lack of immunotherapy methods, this study aims to build a risk prediction model of related immune genes, which can be used to effectively predict the prognosis of laryngeal cancer patients, and provide targets for subsequent immunotherapy. Methods: We collected the 111 cases of laryngeal squamous cell carcinoma and 12 matched normal samples in the The Cancer Genome Atlas Database (TCGA) gene expression quantification database. The differentially expressed related immune genes were screened by R software version 3.5.2. The COX regression model of immune related genes was constructed, and the sensitivity and specificity of the model were evaluated. The risk value was calculated according to the model, and the risk curve was drawn to verify the correlation between related immune genes, risk score, and clinical traits. Results: We selected 8 immune-related genes that can predict the prognosis of LSCC in a COX regression model and plotted the Kaplan-Meier survival curve. The 5-year survival rate of the high-risk group was 16.5% (95% CI: 0.059-0.459), and that of the low-risk group was 72.9% (95% CI: 0.555-0.956). The area under the receiver operating characteristic (ROC) curve was used to confirm the accuracy of the model (AUG = 0.887). After univariate and multivariate regression analysis, the risk score can be used as an independent risk factor for predicting prognosis. The risk score (P = .021) was positively correlated with the clinical Stage classification. Conclusion: We screened out 8 immune genes related to prognosis: RBP1, TLR2, AQP9, BTC, EPO, STC2, ZAP70, and PLCG1 to construct risk value models, which can be used to speculate the prognosis of the disease and provide new targets for future immunotherapy.
doi_str_mv 10.1097/MD.0000000000024263
format Article
fullrecord <record><control><sourceid>proquest_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1097_MD_0000000000024263</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>2479418476</sourcerecordid><originalsourceid>FETCH-LOGICAL-c4505-4421dad2ad778fb5ba7bc7357df0f6028504a808c27048de73030c6aa0d31ed63</originalsourceid><addsrcrecordid>eNqNUcuOFCEUJUbjtKNfYGJYmpgaeRZVGxPT4yuZiRtduSAU3OpGKeiBqpn499J22z5WsoHAedzDQegpJReU9Orl9eUF-b2YYC2_h1ZU8raRfSvuo1W9lY3qlThDj0r5SgjliomH6Ixz0baMshX6cp0cBAxlNkPwZTtBnHEa8S6nTUxl9rbJEMwMDvtpWiLgDUQo2EccTP4eN2ACLjeLmdJSsIUQsDXZ-pgm8xg9GE0o8OS4n6PPb998Wr9vrj6--7B-fdVYIYlshGDUGceMU6obBzkYNVjFpXIjGVvCOkmE6UhnmSKic6A44cS2xhDHKbiWn6NXB93dMkzgbI2QTdC77Kc6ok7G679fot_qTbrVqqqKllWB50eBnG6W-hd68mWfxUSosTQTqhe0E2rvxQ9Qm1MpGcaTDSV6X4u-vtT_1lJZz_6c8MT51UMFvDgA7mBIY7EeooUTrOq0lHVE9fXUy4ru_h-99rOZfYrrtMS5UsWRmsIMuXwLyx1kva01ztufg0vVs4YRRgmlkjQHxx_WC7py</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype><pqid>2479418476</pqid></control><display><type>article</type><title>Model establishment of prognostic-related immune genes in laryngeal squamous cell carcinoma</title><source>MEDLINE</source><source>DOAJ Directory of Open Access Journals</source><source>Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals</source><source>Wolters Kluwer Open Health</source><source>Web of Science - Science Citation Index Expanded - 2021&lt;img src="https://exlibris-pub.s3.amazonaws.com/fromwos-v2.jpg" /&gt;</source><source>IngentaConnect Free/Open Access Journals</source><source>PubMed Central</source><source>Alma/SFX Local Collection</source><creator>Sun, Ming ; Chen, Sihan ; Fu, Min</creator><creatorcontrib>Sun, Ming ; Chen, Sihan ; Fu, Min</creatorcontrib><description>Background: Laryngeal squamous cell carcinoma (LSCC) is one of the most common malignant tumors of the head and neck in the world. At present, the treatment methods include surgery, radiotherapy, and chemotherapy, but the 5-year survival rate is still not ideal and the quality of life of the patients is low. Due to the relative lack of immunotherapy methods, this study aims to build a risk prediction model of related immune genes, which can be used to effectively predict the prognosis of laryngeal cancer patients, and provide targets for subsequent immunotherapy. Methods: We collected the 111 cases of laryngeal squamous cell carcinoma and 12 matched normal samples in the The Cancer Genome Atlas Database (TCGA) gene expression quantification database. The differentially expressed related immune genes were screened by R software version 3.5.2. The COX regression model of immune related genes was constructed, and the sensitivity and specificity of the model were evaluated. The risk value was calculated according to the model, and the risk curve was drawn to verify the correlation between related immune genes, risk score, and clinical traits. Results: We selected 8 immune-related genes that can predict the prognosis of LSCC in a COX regression model and plotted the Kaplan-Meier survival curve. The 5-year survival rate of the high-risk group was 16.5% (95% CI: 0.059-0.459), and that of the low-risk group was 72.9% (95% CI: 0.555-0.956). The area under the receiver operating characteristic (ROC) curve was used to confirm the accuracy of the model (AUG = 0.887). After univariate and multivariate regression analysis, the risk score can be used as an independent risk factor for predicting prognosis. The risk score (P = .021) was positively correlated with the clinical Stage classification. Conclusion: We screened out 8 immune genes related to prognosis: RBP1, TLR2, AQP9, BTC, EPO, STC2, ZAP70, and PLCG1 to construct risk value models, which can be used to speculate the prognosis of the disease and provide new targets for future immunotherapy.</description><identifier>ISSN: 0025-7974</identifier><identifier>EISSN: 1536-5964</identifier><identifier>DOI: 10.1097/MD.0000000000024263</identifier><identifier>PMID: 33466212</identifier><language>eng</language><publisher>PHILADELPHIA: Lippincott Williams &amp; Wilkins</publisher><subject>Aquaporins - analysis ; Betacellulin - analysis ; Biomarkers, Tumor ; Databases, Genetic ; Diagnostic Accuracy Study ; Erythropoietin - analysis ; Female ; Gene Expression Regulation, Neoplastic - genetics ; General &amp; Internal Medicine ; Glycoproteins - analysis ; Humans ; Immunoproteins - analysis ; Intercellular Signaling Peptides and Proteins - analysis ; Laryngeal Neoplasms - genetics ; Laryngeal Neoplasms - mortality ; Life Sciences &amp; Biomedicine ; Male ; Medicine, General &amp; Internal ; Phospholipase C gamma - analysis ; Prognosis ; Proportional Hazards Models ; Retinol-Binding Proteins, Cellular - analysis ; Risk Assessment ; Risk Factors ; Science &amp; Technology ; Sensitivity and Specificity ; Squamous Cell Carcinoma of Head and Neck - genetics ; Squamous Cell Carcinoma of Head and Neck - mortality ; Survival Rate ; Toll-Like Receptor 2 - analysis</subject><ispartof>Medicine (Baltimore), 2021-01, Vol.100 (2), p.e24263-e24263, Article 24263</ispartof><rights>Lippincott Williams &amp; Wilkins</rights><rights>Copyright © 2021 the Author(s). Published by Wolters Kluwer Health, Inc.</rights><rights>Copyright © 2021 the Author(s). Published by Wolters Kluwer Health, Inc. 2021</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>true</woscitedreferencessubscribed><woscitedreferencescount>8</woscitedreferencescount><woscitedreferencesoriginalsourcerecordid>wos000612807900095</woscitedreferencesoriginalsourcerecordid><citedby>FETCH-LOGICAL-c4505-4421dad2ad778fb5ba7bc7357df0f6028504a808c27048de73030c6aa0d31ed63</citedby><cites>FETCH-LOGICAL-c4505-4421dad2ad778fb5ba7bc7357df0f6028504a808c27048de73030c6aa0d31ed63</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808462/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808462/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,315,728,781,785,865,886,2115,27929,27930,39263,53796,53798</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33466212$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Sun, Ming</creatorcontrib><creatorcontrib>Chen, Sihan</creatorcontrib><creatorcontrib>Fu, Min</creatorcontrib><title>Model establishment of prognostic-related immune genes in laryngeal squamous cell carcinoma</title><title>Medicine (Baltimore)</title><addtitle>MEDICINE</addtitle><addtitle>Medicine (Baltimore)</addtitle><description>Background: Laryngeal squamous cell carcinoma (LSCC) is one of the most common malignant tumors of the head and neck in the world. At present, the treatment methods include surgery, radiotherapy, and chemotherapy, but the 5-year survival rate is still not ideal and the quality of life of the patients is low. Due to the relative lack of immunotherapy methods, this study aims to build a risk prediction model of related immune genes, which can be used to effectively predict the prognosis of laryngeal cancer patients, and provide targets for subsequent immunotherapy. Methods: We collected the 111 cases of laryngeal squamous cell carcinoma and 12 matched normal samples in the The Cancer Genome Atlas Database (TCGA) gene expression quantification database. The differentially expressed related immune genes were screened by R software version 3.5.2. The COX regression model of immune related genes was constructed, and the sensitivity and specificity of the model were evaluated. The risk value was calculated according to the model, and the risk curve was drawn to verify the correlation between related immune genes, risk score, and clinical traits. Results: We selected 8 immune-related genes that can predict the prognosis of LSCC in a COX regression model and plotted the Kaplan-Meier survival curve. The 5-year survival rate of the high-risk group was 16.5% (95% CI: 0.059-0.459), and that of the low-risk group was 72.9% (95% CI: 0.555-0.956). The area under the receiver operating characteristic (ROC) curve was used to confirm the accuracy of the model (AUG = 0.887). After univariate and multivariate regression analysis, the risk score can be used as an independent risk factor for predicting prognosis. The risk score (P = .021) was positively correlated with the clinical Stage classification. Conclusion: We screened out 8 immune genes related to prognosis: RBP1, TLR2, AQP9, BTC, EPO, STC2, ZAP70, and PLCG1 to construct risk value models, which can be used to speculate the prognosis of the disease and provide new targets for future immunotherapy.</description><subject>Aquaporins - analysis</subject><subject>Betacellulin - analysis</subject><subject>Biomarkers, Tumor</subject><subject>Databases, Genetic</subject><subject>Diagnostic Accuracy Study</subject><subject>Erythropoietin - analysis</subject><subject>Female</subject><subject>Gene Expression Regulation, Neoplastic - genetics</subject><subject>General &amp; Internal Medicine</subject><subject>Glycoproteins - analysis</subject><subject>Humans</subject><subject>Immunoproteins - analysis</subject><subject>Intercellular Signaling Peptides and Proteins - analysis</subject><subject>Laryngeal Neoplasms - genetics</subject><subject>Laryngeal Neoplasms - mortality</subject><subject>Life Sciences &amp; Biomedicine</subject><subject>Male</subject><subject>Medicine, General &amp; Internal</subject><subject>Phospholipase C gamma - analysis</subject><subject>Prognosis</subject><subject>Proportional Hazards Models</subject><subject>Retinol-Binding Proteins, Cellular - analysis</subject><subject>Risk Assessment</subject><subject>Risk Factors</subject><subject>Science &amp; Technology</subject><subject>Sensitivity and Specificity</subject><subject>Squamous Cell Carcinoma of Head and Neck - genetics</subject><subject>Squamous Cell Carcinoma of Head and Neck - mortality</subject><subject>Survival Rate</subject><subject>Toll-Like Receptor 2 - analysis</subject><issn>0025-7974</issn><issn>1536-5964</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>HGBXW</sourceid><sourceid>EIF</sourceid><recordid>eNqNUcuOFCEUJUbjtKNfYGJYmpgaeRZVGxPT4yuZiRtduSAU3OpGKeiBqpn499J22z5WsoHAedzDQegpJReU9Orl9eUF-b2YYC2_h1ZU8raRfSvuo1W9lY3qlThDj0r5SgjliomH6Ixz0baMshX6cp0cBAxlNkPwZTtBnHEa8S6nTUxl9rbJEMwMDvtpWiLgDUQo2EccTP4eN2ACLjeLmdJSsIUQsDXZ-pgm8xg9GE0o8OS4n6PPb998Wr9vrj6--7B-fdVYIYlshGDUGceMU6obBzkYNVjFpXIjGVvCOkmE6UhnmSKic6A44cS2xhDHKbiWn6NXB93dMkzgbI2QTdC77Kc6ok7G679fot_qTbrVqqqKllWB50eBnG6W-hd68mWfxUSosTQTqhe0E2rvxQ9Qm1MpGcaTDSV6X4u-vtT_1lJZz_6c8MT51UMFvDgA7mBIY7EeooUTrOq0lHVE9fXUy4ru_h-99rOZfYrrtMS5UsWRmsIMuXwLyx1kva01ztufg0vVs4YRRgmlkjQHxx_WC7py</recordid><startdate>20210115</startdate><enddate>20210115</enddate><creator>Sun, Ming</creator><creator>Chen, Sihan</creator><creator>Fu, Min</creator><general>Lippincott Williams &amp; Wilkins</general><scope>BLEPL</scope><scope>DTL</scope><scope>HGBXW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>7X8</scope><scope>5PM</scope></search><sort><creationdate>20210115</creationdate><title>Model establishment of prognostic-related immune genes in laryngeal squamous cell carcinoma</title><author>Sun, Ming ; Chen, Sihan ; Fu, Min</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c4505-4421dad2ad778fb5ba7bc7357df0f6028504a808c27048de73030c6aa0d31ed63</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Aquaporins - analysis</topic><topic>Betacellulin - analysis</topic><topic>Biomarkers, Tumor</topic><topic>Databases, Genetic</topic><topic>Diagnostic Accuracy Study</topic><topic>Erythropoietin - analysis</topic><topic>Female</topic><topic>Gene Expression Regulation, Neoplastic - genetics</topic><topic>General &amp; Internal Medicine</topic><topic>Glycoproteins - analysis</topic><topic>Humans</topic><topic>Immunoproteins - analysis</topic><topic>Intercellular Signaling Peptides and Proteins - analysis</topic><topic>Laryngeal Neoplasms - genetics</topic><topic>Laryngeal Neoplasms - mortality</topic><topic>Life Sciences &amp; Biomedicine</topic><topic>Male</topic><topic>Medicine, General &amp; Internal</topic><topic>Phospholipase C gamma - analysis</topic><topic>Prognosis</topic><topic>Proportional Hazards Models</topic><topic>Retinol-Binding Proteins, Cellular - analysis</topic><topic>Risk Assessment</topic><topic>Risk Factors</topic><topic>Science &amp; Technology</topic><topic>Sensitivity and Specificity</topic><topic>Squamous Cell Carcinoma of Head and Neck - genetics</topic><topic>Squamous Cell Carcinoma of Head and Neck - mortality</topic><topic>Survival Rate</topic><topic>Toll-Like Receptor 2 - analysis</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Sun, Ming</creatorcontrib><creatorcontrib>Chen, Sihan</creatorcontrib><creatorcontrib>Fu, Min</creatorcontrib><collection>Web of Science Core Collection</collection><collection>Science Citation Index Expanded</collection><collection>Web of Science - Science Citation Index Expanded - 2021</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><jtitle>Medicine (Baltimore)</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Sun, Ming</au><au>Chen, Sihan</au><au>Fu, Min</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Model establishment of prognostic-related immune genes in laryngeal squamous cell carcinoma</atitle><jtitle>Medicine (Baltimore)</jtitle><stitle>MEDICINE</stitle><addtitle>Medicine (Baltimore)</addtitle><date>2021-01-15</date><risdate>2021</risdate><volume>100</volume><issue>2</issue><spage>e24263</spage><epage>e24263</epage><pages>e24263-e24263</pages><artnum>24263</artnum><issn>0025-7974</issn><eissn>1536-5964</eissn><abstract>Background: Laryngeal squamous cell carcinoma (LSCC) is one of the most common malignant tumors of the head and neck in the world. At present, the treatment methods include surgery, radiotherapy, and chemotherapy, but the 5-year survival rate is still not ideal and the quality of life of the patients is low. Due to the relative lack of immunotherapy methods, this study aims to build a risk prediction model of related immune genes, which can be used to effectively predict the prognosis of laryngeal cancer patients, and provide targets for subsequent immunotherapy. Methods: We collected the 111 cases of laryngeal squamous cell carcinoma and 12 matched normal samples in the The Cancer Genome Atlas Database (TCGA) gene expression quantification database. The differentially expressed related immune genes were screened by R software version 3.5.2. The COX regression model of immune related genes was constructed, and the sensitivity and specificity of the model were evaluated. The risk value was calculated according to the model, and the risk curve was drawn to verify the correlation between related immune genes, risk score, and clinical traits. Results: We selected 8 immune-related genes that can predict the prognosis of LSCC in a COX regression model and plotted the Kaplan-Meier survival curve. The 5-year survival rate of the high-risk group was 16.5% (95% CI: 0.059-0.459), and that of the low-risk group was 72.9% (95% CI: 0.555-0.956). The area under the receiver operating characteristic (ROC) curve was used to confirm the accuracy of the model (AUG = 0.887). After univariate and multivariate regression analysis, the risk score can be used as an independent risk factor for predicting prognosis. The risk score (P = .021) was positively correlated with the clinical Stage classification. Conclusion: We screened out 8 immune genes related to prognosis: RBP1, TLR2, AQP9, BTC, EPO, STC2, ZAP70, and PLCG1 to construct risk value models, which can be used to speculate the prognosis of the disease and provide new targets for future immunotherapy.</abstract><cop>PHILADELPHIA</cop><pub>Lippincott Williams &amp; Wilkins</pub><pmid>33466212</pmid><doi>10.1097/MD.0000000000024263</doi><tpages>9</tpages><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 0025-7974
ispartof Medicine (Baltimore), 2021-01, Vol.100 (2), p.e24263-e24263, Article 24263
issn 0025-7974
1536-5964
language eng
recordid cdi_crossref_primary_10_1097_MD_0000000000024263
source MEDLINE; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; Wolters Kluwer Open Health; Web of Science - Science Citation Index Expanded - 2021<img src="https://exlibris-pub.s3.amazonaws.com/fromwos-v2.jpg" />; IngentaConnect Free/Open Access Journals; PubMed Central; Alma/SFX Local Collection
subjects Aquaporins - analysis
Betacellulin - analysis
Biomarkers, Tumor
Databases, Genetic
Diagnostic Accuracy Study
Erythropoietin - analysis
Female
Gene Expression Regulation, Neoplastic - genetics
General & Internal Medicine
Glycoproteins - analysis
Humans
Immunoproteins - analysis
Intercellular Signaling Peptides and Proteins - analysis
Laryngeal Neoplasms - genetics
Laryngeal Neoplasms - mortality
Life Sciences & Biomedicine
Male
Medicine, General & Internal
Phospholipase C gamma - analysis
Prognosis
Proportional Hazards Models
Retinol-Binding Proteins, Cellular - analysis
Risk Assessment
Risk Factors
Science & Technology
Sensitivity and Specificity
Squamous Cell Carcinoma of Head and Neck - genetics
Squamous Cell Carcinoma of Head and Neck - mortality
Survival Rate
Toll-Like Receptor 2 - analysis
title Model establishment of prognostic-related immune genes in laryngeal squamous cell carcinoma
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2024-12-15T07%3A24%3A28IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-proquest_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Model%20establishment%20of%20prognostic-related%20immune%20genes%20in%20laryngeal%20squamous%20cell%20carcinoma&rft.jtitle=Medicine%20(Baltimore)&rft.au=Sun,%20Ming&rft.date=2021-01-15&rft.volume=100&rft.issue=2&rft.spage=e24263&rft.epage=e24263&rft.pages=e24263-e24263&rft.artnum=24263&rft.issn=0025-7974&rft.eissn=1536-5964&rft_id=info:doi/10.1097/MD.0000000000024263&rft_dat=%3Cproquest_cross%3E2479418476%3C/proquest_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_pqid=2479418476&rft_id=info:pmid/33466212&rfr_iscdi=true