Pathway-based association analysis of genome-wide screening data suggest that genes associated with the γ-aminobutyric acid receptor signaling pathway are involved in neuroleptic-induced, treatment-resistant tardive dyskinesia

OBJECTIVENeuroleptic-induced tardive dyskinesia (TD) is an involuntary movement disorder that develops in patients who have undergone long-term treatment with antipsychotic medications, and its etiology is unclear. In this study, a genome-wide association screening was done to identify the pathway(s...

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Veröffentlicht in:Pharmacogenetics and genomics 2008-04, Vol.18 (4), p.317-323
Hauptverfasser: Inada, Toshiya, Koga, Minori, Ishiguro, Hiroki, Horiuchi, Yasue, Syu, Aoi, Yoshio, Takashi, Takahashi, Nagahide, Ozaki, Norio, Arinami, Tadao
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container_issue 4
container_start_page 317
container_title Pharmacogenetics and genomics
container_volume 18
creator Inada, Toshiya
Koga, Minori
Ishiguro, Hiroki
Horiuchi, Yasue
Syu, Aoi
Yoshio, Takashi
Takahashi, Nagahide
Ozaki, Norio
Arinami, Tadao
description OBJECTIVENeuroleptic-induced tardive dyskinesia (TD) is an involuntary movement disorder that develops in patients who have undergone long-term treatment with antipsychotic medications, and its etiology is unclear. In this study, a genome-wide association screening was done to identify the pathway(s) in which genetic variations influence susceptibility to neuroleptic-induced TD. METHODSScreening with Sentrix Human-1 Genotyping BeadChip (Illumina, San Diego, California, USA) was done for 50 Japanese schizophrenia patients with treatment-resistant TD and 50 Japanese schizophrenia patients without TD. A total of 40 573 single nucleotide polymorphisms that were not in linkage disequilibrium with each other and were located in the exonic and intronic regions of 13 307 genes were analyzed. After gene-based corrections, P values for allelic associations were subjected to canonical pathway-based analyses with Ingenuity Pathway Analysis software (Ingenuity Systems, Inc., Redwood City, California, USA). RESULTSEight genes (ABAT, ALDH9A1, GABRA3, GABRA4, GABRB2, GABRAG3, GPHN, and SLC6A11) contained polymorphisms with gene-based corrected allelic P values of less than 0.05. They were aggregated significantly in 33 genes belonging to the γ-aminobutyric acid (GABA) receptor signaling pathway (P=0.00007, corrected P=0.01). Associations were replicated in an independent sample of 36 patients with TD and 136 patients without TD for polymorphisms in SLC6A11 (GABA transporter 3) (P=0.0004 in the total sample), GABRB2 (β-2 subunit of GABA-A receptor) (P=0.00007 in the total sample), and GABRG3 (γ-3 subunit of GABA-A receptor) (P=0.0006 in the total sample). CONCLUSIONThe results suggest that the GABA receptor signaling pathway may be involved in genetic susceptibility to treatment-resistant TD, at least in a subgroup of Japanese patients with schizophrenia. The present results suggest that benzodiazepines may be considered as possible treatment option for TD.
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In this study, a genome-wide association screening was done to identify the pathway(s) in which genetic variations influence susceptibility to neuroleptic-induced TD. METHODSScreening with Sentrix Human-1 Genotyping BeadChip (Illumina, San Diego, California, USA) was done for 50 Japanese schizophrenia patients with treatment-resistant TD and 50 Japanese schizophrenia patients without TD. A total of 40 573 single nucleotide polymorphisms that were not in linkage disequilibrium with each other and were located in the exonic and intronic regions of 13 307 genes were analyzed. After gene-based corrections, P values for allelic associations were subjected to canonical pathway-based analyses with Ingenuity Pathway Analysis software (Ingenuity Systems, Inc., Redwood City, California, USA). RESULTSEight genes (ABAT, ALDH9A1, GABRA3, GABRA4, GABRB2, GABRAG3, GPHN, and SLC6A11) contained polymorphisms with gene-based corrected allelic P values of less than 0.05. They were aggregated significantly in 33 genes belonging to the γ-aminobutyric acid (GABA) receptor signaling pathway (P=0.00007, corrected P=0.01). Associations were replicated in an independent sample of 36 patients with TD and 136 patients without TD for polymorphisms in SLC6A11 (GABA transporter 3) (P=0.0004 in the total sample), GABRB2 (β-2 subunit of GABA-A receptor) (P=0.00007 in the total sample), and GABRG3 (γ-3 subunit of GABA-A receptor) (P=0.0006 in the total sample). CONCLUSIONThe results suggest that the GABA receptor signaling pathway may be involved in genetic susceptibility to treatment-resistant TD, at least in a subgroup of Japanese patients with schizophrenia. The present results suggest that benzodiazepines may be considered as possible treatment option for TD.</description><identifier>ISSN: 1744-6872</identifier><identifier>EISSN: 1744-6880</identifier><identifier>DOI: 10.1097/FPC.0b013e3282f70492</identifier><identifier>PMID: 18334916</identifier><language>eng</language><publisher>Hagerstown, MD: Lippincott Williams &amp; Wilkins, Inc</publisher><subject>Antipsychotic Agents - adverse effects ; Biological and medical sciences ; Cell physiology ; Cell receptors ; Cell structures and functions ; Dyskinesia, Drug-Induced - genetics ; Dyskinesia, Drug-Induced - metabolism ; Female ; Fundamental and applied biological sciences. Psychology ; General pharmacology ; Genetic Predisposition to Disease ; Genetic Testing ; Genome, Human ; Genotype ; Humans ; Linkage Disequilibrium ; Male ; Medical sciences ; Middle Aged ; Miscellaneous ; Molecular and cellular biology ; Pharmacokinetics. Pharmacogenetics. Drug-receptor interactions ; Pharmacology. Drug treatments ; Polymorphism, Single Nucleotide ; Receptors, GABA - genetics ; Receptors, GABA - metabolism ; Schizophrenia - drug therapy ; Schizophrenia - genetics ; Schizophrenia - metabolism ; Signal Transduction</subject><ispartof>Pharmacogenetics and genomics, 2008-04, Vol.18 (4), p.317-323</ispartof><rights>2008 Lippincott Williams &amp; Wilkins, Inc.</rights><rights>2008 INIST-CNRS</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c3805-e83fb3ac0bb68e3e283ee5da566e0b0320742e98e067c77c6b94a6b332dca0f53</citedby><cites>FETCH-LOGICAL-c3805-e83fb3ac0bb68e3e283ee5da566e0b0320742e98e067c77c6b94a6b332dca0f53</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><link.rule.ids>314,776,780,27901,27902</link.rule.ids><backlink>$$Uhttp://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&amp;idt=20194330$$DView record in Pascal Francis$$Hfree_for_read</backlink><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/18334916$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Inada, Toshiya</creatorcontrib><creatorcontrib>Koga, Minori</creatorcontrib><creatorcontrib>Ishiguro, Hiroki</creatorcontrib><creatorcontrib>Horiuchi, Yasue</creatorcontrib><creatorcontrib>Syu, Aoi</creatorcontrib><creatorcontrib>Yoshio, Takashi</creatorcontrib><creatorcontrib>Takahashi, Nagahide</creatorcontrib><creatorcontrib>Ozaki, Norio</creatorcontrib><creatorcontrib>Arinami, Tadao</creatorcontrib><title>Pathway-based association analysis of genome-wide screening data suggest that genes associated with the γ-aminobutyric acid receptor signaling pathway are involved in neuroleptic-induced, treatment-resistant tardive dyskinesia</title><title>Pharmacogenetics and genomics</title><addtitle>Pharmacogenet Genomics</addtitle><description>OBJECTIVENeuroleptic-induced tardive dyskinesia (TD) is an involuntary movement disorder that develops in patients who have undergone long-term treatment with antipsychotic medications, and its etiology is unclear. In this study, a genome-wide association screening was done to identify the pathway(s) in which genetic variations influence susceptibility to neuroleptic-induced TD. METHODSScreening with Sentrix Human-1 Genotyping BeadChip (Illumina, San Diego, California, USA) was done for 50 Japanese schizophrenia patients with treatment-resistant TD and 50 Japanese schizophrenia patients without TD. A total of 40 573 single nucleotide polymorphisms that were not in linkage disequilibrium with each other and were located in the exonic and intronic regions of 13 307 genes were analyzed. After gene-based corrections, P values for allelic associations were subjected to canonical pathway-based analyses with Ingenuity Pathway Analysis software (Ingenuity Systems, Inc., Redwood City, California, USA). RESULTSEight genes (ABAT, ALDH9A1, GABRA3, GABRA4, GABRB2, GABRAG3, GPHN, and SLC6A11) contained polymorphisms with gene-based corrected allelic P values of less than 0.05. They were aggregated significantly in 33 genes belonging to the γ-aminobutyric acid (GABA) receptor signaling pathway (P=0.00007, corrected P=0.01). Associations were replicated in an independent sample of 36 patients with TD and 136 patients without TD for polymorphisms in SLC6A11 (GABA transporter 3) (P=0.0004 in the total sample), GABRB2 (β-2 subunit of GABA-A receptor) (P=0.00007 in the total sample), and GABRG3 (γ-3 subunit of GABA-A receptor) (P=0.0006 in the total sample). CONCLUSIONThe results suggest that the GABA receptor signaling pathway may be involved in genetic susceptibility to treatment-resistant TD, at least in a subgroup of Japanese patients with schizophrenia. The present results suggest that benzodiazepines may be considered as possible treatment option for TD.</description><subject>Antipsychotic Agents - adverse effects</subject><subject>Biological and medical sciences</subject><subject>Cell physiology</subject><subject>Cell receptors</subject><subject>Cell structures and functions</subject><subject>Dyskinesia, Drug-Induced - genetics</subject><subject>Dyskinesia, Drug-Induced - metabolism</subject><subject>Female</subject><subject>Fundamental and applied biological sciences. Psychology</subject><subject>General pharmacology</subject><subject>Genetic Predisposition to Disease</subject><subject>Genetic Testing</subject><subject>Genome, Human</subject><subject>Genotype</subject><subject>Humans</subject><subject>Linkage Disequilibrium</subject><subject>Male</subject><subject>Medical sciences</subject><subject>Middle Aged</subject><subject>Miscellaneous</subject><subject>Molecular and cellular biology</subject><subject>Pharmacokinetics. Pharmacogenetics. Drug-receptor interactions</subject><subject>Pharmacology. Drug treatments</subject><subject>Polymorphism, Single Nucleotide</subject><subject>Receptors, GABA - genetics</subject><subject>Receptors, GABA - metabolism</subject><subject>Schizophrenia - drug therapy</subject><subject>Schizophrenia - genetics</subject><subject>Schizophrenia - metabolism</subject><subject>Signal Transduction</subject><issn>1744-6872</issn><issn>1744-6880</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2008</creationdate><recordtype>article</recordtype><sourceid>EIF</sourceid><recordid>eNpdkc2KFDEUhQtRnHH0DUSycWfGm6R-l9I4Kgw4C10Xt5JbVXGqUk2S6qafy_fwJXwR03TTAy5CAvc75x5ysuytgFsBTfXx7mFzCx0IRUrWsq8gb-Sz7FpUec7Luobnl3clr7JXIfwCUGWTy5fZlaiVyhtRXmd_HzCOezzwDgMZhiEs2mK0i2PocDoEG9jSs4HcMhPfW0MsaE_krBuYwYgsrMNAIbI4YjxyFC4uyXBv45hGxP785jhbt3RrPHirGWprmCdN27h4FuyQth09t6c8DD0x63bLtEsu1jFHq1-mRFvNrTOrJvOBRU8YZ3KRe0pJI7qUA72xO2LmEB5tSmPxdfaixynQm_N9k_28-_xj85Xff__ybfPpnmtVQ8GpVn2nUEPXlTUpkrUiKgwWZUnpo5WEKpfU1ARlpatKl12TY9kpJY1G6At1k-UnX-2XEDz17dbbGf2hFdAeO2tTZ-3_nSXZu5Nsu3YzmSfRuaQEvD8DGDROvUenbbhwEkSTKwVP-_fLFMmHx2ndk29HwimOLQgpFAjBJUANOQDwdKBQ_wCF47i7</recordid><startdate>200804</startdate><enddate>200804</enddate><creator>Inada, Toshiya</creator><creator>Koga, Minori</creator><creator>Ishiguro, Hiroki</creator><creator>Horiuchi, Yasue</creator><creator>Syu, Aoi</creator><creator>Yoshio, Takashi</creator><creator>Takahashi, Nagahide</creator><creator>Ozaki, Norio</creator><creator>Arinami, Tadao</creator><general>Lippincott Williams &amp; Wilkins, Inc</general><general>Lippincott Williams and Wilkins</general><scope>IQODW</scope><scope>CGR</scope><scope>CUY</scope><scope>CVF</scope><scope>ECM</scope><scope>EIF</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>200804</creationdate><title>Pathway-based association analysis of genome-wide screening data suggest that genes associated with the γ-aminobutyric acid receptor signaling pathway are involved in neuroleptic-induced, treatment-resistant tardive dyskinesia</title><author>Inada, Toshiya ; Koga, Minori ; Ishiguro, Hiroki ; Horiuchi, Yasue ; Syu, Aoi ; Yoshio, Takashi ; Takahashi, Nagahide ; Ozaki, Norio ; Arinami, Tadao</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c3805-e83fb3ac0bb68e3e283ee5da566e0b0320742e98e067c77c6b94a6b332dca0f53</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2008</creationdate><topic>Antipsychotic Agents - adverse effects</topic><topic>Biological and medical sciences</topic><topic>Cell physiology</topic><topic>Cell receptors</topic><topic>Cell structures and functions</topic><topic>Dyskinesia, Drug-Induced - genetics</topic><topic>Dyskinesia, Drug-Induced - metabolism</topic><topic>Female</topic><topic>Fundamental and applied biological sciences. Psychology</topic><topic>General pharmacology</topic><topic>Genetic Predisposition to Disease</topic><topic>Genetic Testing</topic><topic>Genome, Human</topic><topic>Genotype</topic><topic>Humans</topic><topic>Linkage Disequilibrium</topic><topic>Male</topic><topic>Medical sciences</topic><topic>Middle Aged</topic><topic>Miscellaneous</topic><topic>Molecular and cellular biology</topic><topic>Pharmacokinetics. Pharmacogenetics. Drug-receptor interactions</topic><topic>Pharmacology. Drug treatments</topic><topic>Polymorphism, Single Nucleotide</topic><topic>Receptors, GABA - genetics</topic><topic>Receptors, GABA - metabolism</topic><topic>Schizophrenia - drug therapy</topic><topic>Schizophrenia - genetics</topic><topic>Schizophrenia - metabolism</topic><topic>Signal Transduction</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Inada, Toshiya</creatorcontrib><creatorcontrib>Koga, Minori</creatorcontrib><creatorcontrib>Ishiguro, Hiroki</creatorcontrib><creatorcontrib>Horiuchi, Yasue</creatorcontrib><creatorcontrib>Syu, Aoi</creatorcontrib><creatorcontrib>Yoshio, Takashi</creatorcontrib><creatorcontrib>Takahashi, Nagahide</creatorcontrib><creatorcontrib>Ozaki, Norio</creatorcontrib><creatorcontrib>Arinami, Tadao</creatorcontrib><collection>Pascal-Francis</collection><collection>Medline</collection><collection>MEDLINE</collection><collection>MEDLINE (Ovid)</collection><collection>MEDLINE</collection><collection>MEDLINE</collection><collection>PubMed</collection><collection>CrossRef</collection><jtitle>Pharmacogenetics and genomics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Inada, Toshiya</au><au>Koga, Minori</au><au>Ishiguro, Hiroki</au><au>Horiuchi, Yasue</au><au>Syu, Aoi</au><au>Yoshio, Takashi</au><au>Takahashi, Nagahide</au><au>Ozaki, Norio</au><au>Arinami, Tadao</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Pathway-based association analysis of genome-wide screening data suggest that genes associated with the γ-aminobutyric acid receptor signaling pathway are involved in neuroleptic-induced, treatment-resistant tardive dyskinesia</atitle><jtitle>Pharmacogenetics and genomics</jtitle><addtitle>Pharmacogenet Genomics</addtitle><date>2008-04</date><risdate>2008</risdate><volume>18</volume><issue>4</issue><spage>317</spage><epage>323</epage><pages>317-323</pages><issn>1744-6872</issn><eissn>1744-6880</eissn><abstract>OBJECTIVENeuroleptic-induced tardive dyskinesia (TD) is an involuntary movement disorder that develops in patients who have undergone long-term treatment with antipsychotic medications, and its etiology is unclear. In this study, a genome-wide association screening was done to identify the pathway(s) in which genetic variations influence susceptibility to neuroleptic-induced TD. METHODSScreening with Sentrix Human-1 Genotyping BeadChip (Illumina, San Diego, California, USA) was done for 50 Japanese schizophrenia patients with treatment-resistant TD and 50 Japanese schizophrenia patients without TD. A total of 40 573 single nucleotide polymorphisms that were not in linkage disequilibrium with each other and were located in the exonic and intronic regions of 13 307 genes were analyzed. After gene-based corrections, P values for allelic associations were subjected to canonical pathway-based analyses with Ingenuity Pathway Analysis software (Ingenuity Systems, Inc., Redwood City, California, USA). RESULTSEight genes (ABAT, ALDH9A1, GABRA3, GABRA4, GABRB2, GABRAG3, GPHN, and SLC6A11) contained polymorphisms with gene-based corrected allelic P values of less than 0.05. They were aggregated significantly in 33 genes belonging to the γ-aminobutyric acid (GABA) receptor signaling pathway (P=0.00007, corrected P=0.01). Associations were replicated in an independent sample of 36 patients with TD and 136 patients without TD for polymorphisms in SLC6A11 (GABA transporter 3) (P=0.0004 in the total sample), GABRB2 (β-2 subunit of GABA-A receptor) (P=0.00007 in the total sample), and GABRG3 (γ-3 subunit of GABA-A receptor) (P=0.0006 in the total sample). CONCLUSIONThe results suggest that the GABA receptor signaling pathway may be involved in genetic susceptibility to treatment-resistant TD, at least in a subgroup of Japanese patients with schizophrenia. The present results suggest that benzodiazepines may be considered as possible treatment option for TD.</abstract><cop>Hagerstown, MD</cop><pub>Lippincott Williams &amp; Wilkins, Inc</pub><pmid>18334916</pmid><doi>10.1097/FPC.0b013e3282f70492</doi><tpages>7</tpages></addata></record>
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subjects Antipsychotic Agents - adverse effects
Biological and medical sciences
Cell physiology
Cell receptors
Cell structures and functions
Dyskinesia, Drug-Induced - genetics
Dyskinesia, Drug-Induced - metabolism
Female
Fundamental and applied biological sciences. Psychology
General pharmacology
Genetic Predisposition to Disease
Genetic Testing
Genome, Human
Genotype
Humans
Linkage Disequilibrium
Male
Medical sciences
Middle Aged
Miscellaneous
Molecular and cellular biology
Pharmacokinetics. Pharmacogenetics. Drug-receptor interactions
Pharmacology. Drug treatments
Polymorphism, Single Nucleotide
Receptors, GABA - genetics
Receptors, GABA - metabolism
Schizophrenia - drug therapy
Schizophrenia - genetics
Schizophrenia - metabolism
Signal Transduction
title Pathway-based association analysis of genome-wide screening data suggest that genes associated with the γ-aminobutyric acid receptor signaling pathway are involved in neuroleptic-induced, treatment-resistant tardive dyskinesia
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