A new framework for Subti Wiki, the database for the model organism Bacillus subtilis

A new framework for Subti Wiki, the database for the model organism Bacillus subtilis

Bacillus subtilis is a Gram-positive model bacterium and one of the most-studied and best understood organisms. The complex information resulting from its investigation is compiled in the database SubtiWiki (https://subtiwiki.uni-goettingen.de/v5) in an integrated and intuitive manner. To enhance th...

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Veröffentlicht in:Nucleic acids research 2025-01, Vol.53 (D1), p.D864-D870
Hauptverfasser: Elfmann, Christoph, Dumann, Vincenz, van den Berg, Tim, Stülke, Jörg
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container_end_page D870
container_issue D1
container_start_page D864
container_title Nucleic acids research
container_volume 53
creator Elfmann, Christoph
Dumann, Vincenz
van den Berg, Tim
Stülke, Jörg
description Bacillus subtilis is a Gram-positive model bacterium and one of the most-studied and best understood organisms. The complex information resulting from its investigation is compiled in the database SubtiWiki (https://subtiwiki.uni-goettingen.de/v5) in an integrated and intuitive manner. To enhance the utility of SubtiWiki, we have added novel features such as a viewer to interrogate conserved genomic organization, a widget that shows mutant fitness data for all non-essential genes, and a widget showing protein structures, structure predictions and complex structures. Moreover, we have integrated metabolites as new entities. The new framework also includes a documented API, enabling programmatic access to data for computational tasks. Here we present the recent developments of SubtiWiki and the current state of the data for this organism.
doi_str_mv 10.1093/nar/gkae957
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title A new framework for Subti Wiki, the database for the model organism Bacillus subtilis
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