Chromatin remodelers as active Brownian dimers

Chromatin remodelers are molecular motors which actively displace nucleosomes on chromatin. Recent results on the structural properties of these motors indicate that the displacement of nucleosomal DNA corresponds to an inchworm motion induced by the generation and propagation of twist defects. Here...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Journal of physics. A, Mathematical and theoretical Mathematical and theoretical, 2019-02, Vol.52 (8), p.85601
Hauptverfasser: Blossey, R, Schiessel, H
Format: Artikel
Sprache:eng
Schlagworte:
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue 8
container_start_page 85601
container_title Journal of physics. A, Mathematical and theoretical
container_volume 52
creator Blossey, R
Schiessel, H
description Chromatin remodelers are molecular motors which actively displace nucleosomes on chromatin. Recent results on the structural properties of these motors indicate that the displacement of nucleosomal DNA corresponds to an inchworm motion induced by the generation and propagation of twist defects. Here we show that this basic action mechanism can be described by a coarse-grained active Brownian dimer (ABD) model, thereby quantitatively rationalizing the notion of inchworm motion. The model allows for extensions to more microscopic as well towards more macroscopic descriptions of chromatin hydrodynamics.
doi_str_mv 10.1088/1751-8121/aafea0
format Article
fullrecord <record><control><sourceid>hal_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1088_1751_8121_aafea0</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>oai_HAL_hal_02344788v1</sourcerecordid><originalsourceid>FETCH-LOGICAL-c356t-20fd7504ce73924ce83b21929d09379f6634464890d259f238e9cc8b670a88703</originalsourceid><addsrcrecordid>eNp1UMFKxDAUDKLgunr32Ktgd1-StkmO66KuUPCi55BNEzZL2yxJXfHvTan0JjyYx7yZgTcI3WNYYeB8jVmJc44JXitljYILtJipy3nH9BrdxHgEKAsQZIFW20PwnRpcnwXT-ca0JsRMpdGDO5vsKfjv3qk-a1yXLrfoyqo2mrs_XKLPl-eP7S6v31_ftps617SshpyAbVgJhTaMCpKA0z3BgogGBGXCVhUtiqrgAhpSCksoN0Jrvq8YKM4Z0CV6mHIPqpWn4DoVfqRXTu42tRw5ICmBcX7GSQuTVgcfYzB2NmCQYzdyfF6ORcipm2R5nCzOn-TRf4U-PfO__BdrlmNS</addsrcrecordid><sourcetype>Open Access Repository</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Chromatin remodelers as active Brownian dimers</title><source>IOP Publishing Journals</source><source>Institute of Physics (IOP) Journals - HEAL-Link</source><creator>Blossey, R ; Schiessel, H</creator><creatorcontrib>Blossey, R ; Schiessel, H</creatorcontrib><description>Chromatin remodelers are molecular motors which actively displace nucleosomes on chromatin. Recent results on the structural properties of these motors indicate that the displacement of nucleosomal DNA corresponds to an inchworm motion induced by the generation and propagation of twist defects. Here we show that this basic action mechanism can be described by a coarse-grained active Brownian dimer (ABD) model, thereby quantitatively rationalizing the notion of inchworm motion. The model allows for extensions to more microscopic as well towards more macroscopic descriptions of chromatin hydrodynamics.</description><identifier>ISSN: 1751-8113</identifier><identifier>EISSN: 1751-8121</identifier><identifier>DOI: 10.1088/1751-8121/aafea0</identifier><identifier>CODEN: JPHAC5</identifier><language>eng</language><publisher>IOP Publishing</publisher><subject>active Brownian dimer ; Biological Physics ; chromatin remodeler ; helicase ; nucleosome ; Physics</subject><ispartof>Journal of physics. A, Mathematical and theoretical, 2019-02, Vol.52 (8), p.85601</ispartof><rights>2019 IOP Publishing Ltd</rights><rights>Distributed under a Creative Commons Attribution 4.0 International License</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c356t-20fd7504ce73924ce83b21929d09379f6634464890d259f238e9cc8b670a88703</citedby><cites>FETCH-LOGICAL-c356t-20fd7504ce73924ce83b21929d09379f6634464890d259f238e9cc8b670a88703</cites><orcidid>0000-0002-4823-7037</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://iopscience.iop.org/article/10.1088/1751-8121/aafea0/pdf$$EPDF$$P50$$Giop$$H</linktopdf><link.rule.ids>230,314,780,784,885,27924,27925,53846,53893</link.rule.ids><backlink>$$Uhttps://hal.science/hal-02344788$$DView record in HAL$$Hfree_for_read</backlink></links><search><creatorcontrib>Blossey, R</creatorcontrib><creatorcontrib>Schiessel, H</creatorcontrib><title>Chromatin remodelers as active Brownian dimers</title><title>Journal of physics. A, Mathematical and theoretical</title><addtitle>JPhysA</addtitle><addtitle>J. Phys. A: Math. Theor</addtitle><description>Chromatin remodelers are molecular motors which actively displace nucleosomes on chromatin. Recent results on the structural properties of these motors indicate that the displacement of nucleosomal DNA corresponds to an inchworm motion induced by the generation and propagation of twist defects. Here we show that this basic action mechanism can be described by a coarse-grained active Brownian dimer (ABD) model, thereby quantitatively rationalizing the notion of inchworm motion. The model allows for extensions to more microscopic as well towards more macroscopic descriptions of chromatin hydrodynamics.</description><subject>active Brownian dimer</subject><subject>Biological Physics</subject><subject>chromatin remodeler</subject><subject>helicase</subject><subject>nucleosome</subject><subject>Physics</subject><issn>1751-8113</issn><issn>1751-8121</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2019</creationdate><recordtype>article</recordtype><recordid>eNp1UMFKxDAUDKLgunr32Ktgd1-StkmO66KuUPCi55BNEzZL2yxJXfHvTan0JjyYx7yZgTcI3WNYYeB8jVmJc44JXitljYILtJipy3nH9BrdxHgEKAsQZIFW20PwnRpcnwXT-ca0JsRMpdGDO5vsKfjv3qk-a1yXLrfoyqo2mrs_XKLPl-eP7S6v31_ftps617SshpyAbVgJhTaMCpKA0z3BgogGBGXCVhUtiqrgAhpSCksoN0Jrvq8YKM4Z0CV6mHIPqpWn4DoVfqRXTu42tRw5ICmBcX7GSQuTVgcfYzB2NmCQYzdyfF6ORcipm2R5nCzOn-TRf4U-PfO__BdrlmNS</recordid><startdate>20190222</startdate><enddate>20190222</enddate><creator>Blossey, R</creator><creator>Schiessel, H</creator><general>IOP Publishing</general><scope>AAYXX</scope><scope>CITATION</scope><scope>1XC</scope><scope>VOOES</scope><orcidid>https://orcid.org/0000-0002-4823-7037</orcidid></search><sort><creationdate>20190222</creationdate><title>Chromatin remodelers as active Brownian dimers</title><author>Blossey, R ; Schiessel, H</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c356t-20fd7504ce73924ce83b21929d09379f6634464890d259f238e9cc8b670a88703</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2019</creationdate><topic>active Brownian dimer</topic><topic>Biological Physics</topic><topic>chromatin remodeler</topic><topic>helicase</topic><topic>nucleosome</topic><topic>Physics</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Blossey, R</creatorcontrib><creatorcontrib>Schiessel, H</creatorcontrib><collection>CrossRef</collection><collection>Hyper Article en Ligne (HAL)</collection><collection>Hyper Article en Ligne (HAL) (Open Access)</collection><jtitle>Journal of physics. A, Mathematical and theoretical</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Blossey, R</au><au>Schiessel, H</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Chromatin remodelers as active Brownian dimers</atitle><jtitle>Journal of physics. A, Mathematical and theoretical</jtitle><stitle>JPhysA</stitle><addtitle>J. Phys. A: Math. Theor</addtitle><date>2019-02-22</date><risdate>2019</risdate><volume>52</volume><issue>8</issue><spage>85601</spage><pages>85601-</pages><issn>1751-8113</issn><eissn>1751-8121</eissn><coden>JPHAC5</coden><abstract>Chromatin remodelers are molecular motors which actively displace nucleosomes on chromatin. Recent results on the structural properties of these motors indicate that the displacement of nucleosomal DNA corresponds to an inchworm motion induced by the generation and propagation of twist defects. Here we show that this basic action mechanism can be described by a coarse-grained active Brownian dimer (ABD) model, thereby quantitatively rationalizing the notion of inchworm motion. The model allows for extensions to more microscopic as well towards more macroscopic descriptions of chromatin hydrodynamics.</abstract><pub>IOP Publishing</pub><doi>10.1088/1751-8121/aafea0</doi><tpages>7</tpages><orcidid>https://orcid.org/0000-0002-4823-7037</orcidid><oa>free_for_read</oa></addata></record>
fulltext fulltext
identifier ISSN: 1751-8113
ispartof Journal of physics. A, Mathematical and theoretical, 2019-02, Vol.52 (8), p.85601
issn 1751-8113
1751-8121
language eng
recordid cdi_crossref_primary_10_1088_1751_8121_aafea0
source IOP Publishing Journals; Institute of Physics (IOP) Journals - HEAL-Link
subjects active Brownian dimer
Biological Physics
chromatin remodeler
helicase
nucleosome
Physics
title Chromatin remodelers as active Brownian dimers
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-05T02%3A48%3A11IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-hal_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Chromatin%20remodelers%20as%20active%20Brownian%20dimers&rft.jtitle=Journal%20of%20physics.%20A,%20Mathematical%20and%20theoretical&rft.au=Blossey,%20R&rft.date=2019-02-22&rft.volume=52&rft.issue=8&rft.spage=85601&rft.pages=85601-&rft.issn=1751-8113&rft.eissn=1751-8121&rft.coden=JPHAC5&rft_id=info:doi/10.1088/1751-8121/aafea0&rft_dat=%3Chal_cross%3Eoai_HAL_hal_02344788v1%3C/hal_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true