Bubble-bound state of triple-stranded DNA: Efimov physics in DNA with repulsion

Bubble-bound state of triple-stranded DNA: Efimov physics in DNA with repulsion

The presence of a thermodynamic phase of a three-stranded DNA, namely, a mixed phase of bubbles of two bound strands and a single one, is established for large dimensions (d⩾5) by using exact real space renormalization group transformations and exact computations of specific heat for finite length c...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
Veröffentlicht in:Journal of statistical mechanics 2017-07, Vol.2017 (7), p.73203
Hauptverfasser: Maji, Jaya, Seno, Flavio, Trovato, Antonio, Bhattacharjee, Somendra M
Format: Artikel
Sprache:eng
Online-Zugang:Volltext
Tags: Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
container_end_page
container_issue 7
container_start_page 73203
container_title Journal of statistical mechanics
container_volume 2017
creator Maji, Jaya
Seno, Flavio
Trovato, Antonio
Bhattacharjee, Somendra M
description The presence of a thermodynamic phase of a three-stranded DNA, namely, a mixed phase of bubbles of two bound strands and a single one, is established for large dimensions (d⩾5) by using exact real space renormalization group transformations and exact computations of specific heat for finite length chains. Similar exact computations for the fractal Sierpinski gasket of dimension d  
doi_str_mv 10.1088/1742-5468/aa75dc
format Article
fullrecord <record><control><sourceid>iop_cross</sourceid><recordid>TN_cdi_crossref_primary_10_1088_1742_5468_aa75dc</recordid><sourceformat>XML</sourceformat><sourcesystem>PC</sourcesystem><sourcerecordid>jstataa75dc</sourcerecordid><originalsourceid>FETCH-LOGICAL-c280t-f5178a80148f99997beb8f36cb361a9d97b11845407e3dbed7d7015e6f31782d3</originalsourceid><addsrcrecordid>eNp9kF1PwyAUhonRxDm995IfYB0UWph3c86PZHE3ek2gQMbSlQZazf79aGqMMVFuDnlznpPzHACuMbrFiPMZZjTPClrymZSs0NUJmHxHpz_-5-Aixh1CJEeUT8DmvleqNpnyfaNh7GRnoLewC65NaeyCbLTR8OF1cQdX1u39B2y3h-iqCF0zxPDTdVsYTNvX0fnmEpxZWUdz9VWn4P1x9bZ8ztabp5flYp1VOUddZgvMuOQIU27n6TFlFLekrBQpsZzrFGDMaUERM0Qro5lmCBemtCSBuSZTgMa5VfAxBmNFG9xehoPASAwHEYOxGIzFeJCElL-QyiXftHSydPV_4M0IOt-Kne9Dk8z-bj8CAvlzbg</addsrcrecordid><sourcetype>Aggregation Database</sourcetype><iscdi>true</iscdi><recordtype>article</recordtype></control><display><type>article</type><title>Bubble-bound state of triple-stranded DNA: Efimov physics in DNA with repulsion</title><source>HEAL-Link subscriptions: Institute of Physics (IOP) Journals</source><source>Institute of Physics Journals</source><creator>Maji, Jaya ; Seno, Flavio ; Trovato, Antonio ; Bhattacharjee, Somendra M</creator><creatorcontrib>Maji, Jaya ; Seno, Flavio ; Trovato, Antonio ; Bhattacharjee, Somendra M</creatorcontrib><description>The presence of a thermodynamic phase of a three-stranded DNA, namely, a mixed phase of bubbles of two bound strands and a single one, is established for large dimensions (d⩾5) by using exact real space renormalization group transformations and exact computations of specific heat for finite length chains. Similar exact computations for the fractal Sierpinski gasket of dimension d  &lt;  2 establish the stability of the phase in the presence of a repulsive three chain interaction. Although, for d  &lt;  2, cooperativity factors for bubbles or noncrossing conditions are needed for the melting transition, the mixed phase may exist even in absence of those. In contrast to the Efimov DNA, where three strands are bound though no two are bound, the mixed phase appears at temperatures less than the two chain melting temperature. Both the Efimov-DNA and the mixed phase are formed essentially due to the strand exchange mechanism.</description><identifier>ISSN: 1742-5468</identifier><identifier>EISSN: 1742-5468</identifier><identifier>DOI: 10.1088/1742-5468/aa75dc</identifier><identifier>CODEN: JSMTC6</identifier><language>eng</language><publisher>IOP Publishing and SISSA</publisher><ispartof>Journal of statistical mechanics, 2017-07, Vol.2017 (7), p.73203</ispartof><rights>2017 IOP Publishing Ltd and SISSA Medialab srl</rights><lds50>peer_reviewed</lds50><woscitedreferencessubscribed>false</woscitedreferencessubscribed><citedby>FETCH-LOGICAL-c280t-f5178a80148f99997beb8f36cb361a9d97b11845407e3dbed7d7015e6f31782d3</citedby><cites>FETCH-LOGICAL-c280t-f5178a80148f99997beb8f36cb361a9d97b11845407e3dbed7d7015e6f31782d3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://iopscience.iop.org/article/10.1088/1742-5468/aa75dc/pdf$$EPDF$$P50$$Giop$$H</linktopdf><link.rule.ids>314,780,784,27923,27924,53845,53892</link.rule.ids></links><search><creatorcontrib>Maji, Jaya</creatorcontrib><creatorcontrib>Seno, Flavio</creatorcontrib><creatorcontrib>Trovato, Antonio</creatorcontrib><creatorcontrib>Bhattacharjee, Somendra M</creatorcontrib><title>Bubble-bound state of triple-stranded DNA: Efimov physics in DNA with repulsion</title><title>Journal of statistical mechanics</title><addtitle>JSTAT</addtitle><addtitle>J. Stat. Mech</addtitle><description>The presence of a thermodynamic phase of a three-stranded DNA, namely, a mixed phase of bubbles of two bound strands and a single one, is established for large dimensions (d⩾5) by using exact real space renormalization group transformations and exact computations of specific heat for finite length chains. Similar exact computations for the fractal Sierpinski gasket of dimension d  &lt;  2 establish the stability of the phase in the presence of a repulsive three chain interaction. Although, for d  &lt;  2, cooperativity factors for bubbles or noncrossing conditions are needed for the melting transition, the mixed phase may exist even in absence of those. In contrast to the Efimov DNA, where three strands are bound though no two are bound, the mixed phase appears at temperatures less than the two chain melting temperature. Both the Efimov-DNA and the mixed phase are formed essentially due to the strand exchange mechanism.</description><issn>1742-5468</issn><issn>1742-5468</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2017</creationdate><recordtype>article</recordtype><recordid>eNp9kF1PwyAUhonRxDm995IfYB0UWph3c86PZHE3ek2gQMbSlQZazf79aGqMMVFuDnlznpPzHACuMbrFiPMZZjTPClrymZSs0NUJmHxHpz_-5-Aixh1CJEeUT8DmvleqNpnyfaNh7GRnoLewC65NaeyCbLTR8OF1cQdX1u39B2y3h-iqCF0zxPDTdVsYTNvX0fnmEpxZWUdz9VWn4P1x9bZ8ztabp5flYp1VOUddZgvMuOQIU27n6TFlFLekrBQpsZzrFGDMaUERM0Qro5lmCBemtCSBuSZTgMa5VfAxBmNFG9xehoPASAwHEYOxGIzFeJCElL-QyiXftHSydPV_4M0IOt-Kne9Dk8z-bj8CAvlzbg</recordid><startdate>20170712</startdate><enddate>20170712</enddate><creator>Maji, Jaya</creator><creator>Seno, Flavio</creator><creator>Trovato, Antonio</creator><creator>Bhattacharjee, Somendra M</creator><general>IOP Publishing and SISSA</general><scope>AAYXX</scope><scope>CITATION</scope></search><sort><creationdate>20170712</creationdate><title>Bubble-bound state of triple-stranded DNA: Efimov physics in DNA with repulsion</title><author>Maji, Jaya ; Seno, Flavio ; Trovato, Antonio ; Bhattacharjee, Somendra M</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c280t-f5178a80148f99997beb8f36cb361a9d97b11845407e3dbed7d7015e6f31782d3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2017</creationdate><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Maji, Jaya</creatorcontrib><creatorcontrib>Seno, Flavio</creatorcontrib><creatorcontrib>Trovato, Antonio</creatorcontrib><creatorcontrib>Bhattacharjee, Somendra M</creatorcontrib><collection>CrossRef</collection><jtitle>Journal of statistical mechanics</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Maji, Jaya</au><au>Seno, Flavio</au><au>Trovato, Antonio</au><au>Bhattacharjee, Somendra M</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Bubble-bound state of triple-stranded DNA: Efimov physics in DNA with repulsion</atitle><jtitle>Journal of statistical mechanics</jtitle><stitle>JSTAT</stitle><addtitle>J. Stat. Mech</addtitle><date>2017-07-12</date><risdate>2017</risdate><volume>2017</volume><issue>7</issue><spage>73203</spage><pages>73203-</pages><issn>1742-5468</issn><eissn>1742-5468</eissn><coden>JSMTC6</coden><abstract>The presence of a thermodynamic phase of a three-stranded DNA, namely, a mixed phase of bubbles of two bound strands and a single one, is established for large dimensions (d⩾5) by using exact real space renormalization group transformations and exact computations of specific heat for finite length chains. Similar exact computations for the fractal Sierpinski gasket of dimension d  &lt;  2 establish the stability of the phase in the presence of a repulsive three chain interaction. Although, for d  &lt;  2, cooperativity factors for bubbles or noncrossing conditions are needed for the melting transition, the mixed phase may exist even in absence of those. In contrast to the Efimov DNA, where three strands are bound though no two are bound, the mixed phase appears at temperatures less than the two chain melting temperature. Both the Efimov-DNA and the mixed phase are formed essentially due to the strand exchange mechanism.</abstract><pub>IOP Publishing and SISSA</pub><doi>10.1088/1742-5468/aa75dc</doi><tpages>21</tpages></addata></record>
fulltext fulltext
identifier ISSN: 1742-5468
ispartof Journal of statistical mechanics, 2017-07, Vol.2017 (7), p.73203
issn 1742-5468
1742-5468
language eng
recordid cdi_crossref_primary_10_1088_1742_5468_aa75dc
source HEAL-Link subscriptions: Institute of Physics (IOP) Journals; Institute of Physics Journals
title Bubble-bound state of triple-stranded DNA: Efimov physics in DNA with repulsion
url https://sfx.bib-bvb.de/sfx_tum?ctx_ver=Z39.88-2004&ctx_enc=info:ofi/enc:UTF-8&ctx_tim=2025-01-10T19%3A29%3A17IST&url_ver=Z39.88-2004&url_ctx_fmt=infofi/fmt:kev:mtx:ctx&rfr_id=info:sid/primo.exlibrisgroup.com:primo3-Article-iop_cross&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.genre=article&rft.atitle=Bubble-bound%20state%20of%20triple-stranded%20DNA:%20Efimov%20physics%20in%20DNA%20with%20repulsion&rft.jtitle=Journal%20of%20statistical%20mechanics&rft.au=Maji,%20Jaya&rft.date=2017-07-12&rft.volume=2017&rft.issue=7&rft.spage=73203&rft.pages=73203-&rft.issn=1742-5468&rft.eissn=1742-5468&rft.coden=JSMTC6&rft_id=info:doi/10.1088/1742-5468/aa75dc&rft_dat=%3Ciop_cross%3Ejstataa75dc%3C/iop_cross%3E%3Curl%3E%3C/url%3E&disable_directlink=true&sfx.directlink=off&sfx.report_link=0&rft_id=info:oai/&rft_id=info:pmid/&rfr_iscdi=true