Complete mitochondrial genome of the sea-pen, Cavernularia obesa (Valenciennes, 1850) (Octocorallia: Veretillidae)
Here, we sequenced and annotated the complete mitochondrial genome for the sea-pen, Cavernularia obesa (Valenciennes, 1850). The complete mitogenome of C. obesa is 18,641 bp, with 34.7% of GC ratio. The mitogenome comprises 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 22 transfer...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2023, Vol.8 (1), p.113-115 |
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| description | Here, we sequenced and annotated the complete mitochondrial genome for the sea-pen, Cavernularia obesa (Valenciennes, 1850). The complete mitogenome of C. obesa is 18,641 bp, with 34.7% of GC ratio. The mitogenome comprises 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a non-coding region. Phylogenomic analysis based on 19 in-group taxa belonging to the orders Alcyonacea and Pennatulacea has congruent with published phylogenetic relationship for Octocorallia, which C. obesa was grouped to members of the Pennatulacea. This mitogenome resource will be useful for future phylogenetic studies of water fleas. |
| doi_str_mv | 10.1080/23802359.2022.2163596 |
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This mitogenome resource will be useful for future phylogenetic studies of water fleas.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2022.2163596</identifier><identifier>PMID: 36685645</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Callopora obesa ; Cavernularia ; cavernularia obesa ; Genomes ; Mitochondria ; Mitochondrial DNA ; mitogenome ; Mitogenome Announcement ; Octocorallia ; Pennatulacea ; Phylogenetics ; Phylogeny ; rRNA ; Science ; Sea-pen ; Transfer RNA ; tRNA ; veretillidae</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2023, Vol.8 (1), p.113-115</ispartof><rights>2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2023</rights><rights>2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2023 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c510t-778803feb2fca0dacc07106e40fe114ae1a831d49811a8be1b4695d7ca13eec03</cites><orcidid>0000-0003-3313-8850</orcidid></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848367/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC9848367/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,4010,27479,27900,27901,27902,53766,53768,59116,59117</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/36685645$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Eom, Hye-Jin</creatorcontrib><creatorcontrib>Rhee, Jae-Sung</creatorcontrib><title>Complete mitochondrial genome of the sea-pen, Cavernularia obesa (Valenciennes, 1850) (Octocorallia: Veretillidae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Here, we sequenced and annotated the complete mitochondrial genome for the sea-pen, Cavernularia obesa (Valenciennes, 1850). The complete mitogenome of C. obesa is 18,641 bp, with 34.7% of GC ratio. The mitogenome comprises 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a non-coding region. Phylogenomic analysis based on 19 in-group taxa belonging to the orders Alcyonacea and Pennatulacea has congruent with published phylogenetic relationship for Octocorallia, which C. obesa was grouped to members of the Pennatulacea. This mitogenome resource will be useful for future phylogenetic studies of water fleas.</description><subject>Callopora obesa</subject><subject>Cavernularia</subject><subject>cavernularia obesa</subject><subject>Genomes</subject><subject>Mitochondria</subject><subject>Mitochondrial DNA</subject><subject>mitogenome</subject><subject>Mitogenome Announcement</subject><subject>Octocorallia</subject><subject>Pennatulacea</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>Science</subject><subject>Sea-pen</subject><subject>Transfer RNA</subject><subject>tRNA</subject><subject>veretillidae</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2023</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9ksFu1DAQhiMEolXpI4AscdlKzWLHseNwqECrApUq9QK9WhNnsuuVYy92tqhvj7e7rVoOnDzyfPOPZ_wXxXtG54wq-qniilZctPOKVtW8YjLH8lVxvLsvd4nXz-Kj4jSlNaU0Y03TNm-LIy6lErIWx0VchHHjcEIy2imYVfB9tODIEn0YkYSBTCskCaHcoD8nC7jD6LcOMkRChwnI7BYcemPRe0znhClBz8jsxmS1EME5C5_JLUacbI57wLN3xZsBXMLTw3lS_Pp2-XPxo7y--X61-HpdGsHoVDaNUpQP2FWDAdqDMbRhVGJNB2SsBmSgOOvrVrEcdci6WraibwwwjmgoPymu9rp9gLXeRDtCvNcBrH64CHGpIU7WONQCFa0HKSTvaC14lfvJvhU1cjG0eYdZ62Kvtdl2I_YG_ZRneyH6MuPtSi_DnW5VrbhsssDsIBDD7y2mSY82GXQOPIZt0lUjlWKSyiqjH_9B12EbfV5Vphqm8hrqNlNiT5kYUoo4PD2GUb0ziX40id6ZRB9Mkus-PJ_kqerREhn4sgesH0Ic4U-IrtcT3LsQhwj5p5Pm_-_xF5Boyns</recordid><startdate>2023</startdate><enddate>2023</enddate><creator>Eom, Hye-Jin</creator><creator>Rhee, Jae-Sung</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0003-3313-8850</orcidid></search><sort><creationdate>2023</creationdate><title>Complete mitochondrial genome of the sea-pen, Cavernularia obesa (Valenciennes, 1850) (Octocorallia: Veretillidae)</title><author>Eom, Hye-Jin ; Rhee, Jae-Sung</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c510t-778803feb2fca0dacc07106e40fe114ae1a831d49811a8be1b4695d7ca13eec03</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2023</creationdate><topic>Callopora obesa</topic><topic>Cavernularia</topic><topic>cavernularia obesa</topic><topic>Genomes</topic><topic>Mitochondria</topic><topic>Mitochondrial DNA</topic><topic>mitogenome</topic><topic>Mitogenome Announcement</topic><topic>Octocorallia</topic><topic>Pennatulacea</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>rRNA</topic><topic>Science</topic><topic>Sea-pen</topic><topic>Transfer RNA</topic><topic>tRNA</topic><topic>veretillidae</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Eom, Hye-Jin</creatorcontrib><creatorcontrib>Rhee, Jae-Sung</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. 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The mitogenome comprises 13 protein-coding genes (PCGs), two ribosomal RNA (rRNA) genes, 22 transfer RNA (tRNA) genes, and a non-coding region. Phylogenomic analysis based on 19 in-group taxa belonging to the orders Alcyonacea and Pennatulacea has congruent with published phylogenetic relationship for Octocorallia, which C. obesa was grouped to members of the Pennatulacea. This mitogenome resource will be useful for future phylogenetic studies of water fleas.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>36685645</pmid><doi>10.1080/23802359.2022.2163596</doi><tpages>3</tpages><orcidid>https://orcid.org/0000-0003-3313-8850</orcidid><oa>free_for_read</oa></addata></record> |
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| subjects | Callopora obesa Cavernularia cavernularia obesa Genomes Mitochondria Mitochondrial DNA mitogenome Mitogenome Announcement Octocorallia Pennatulacea Phylogenetics Phylogeny rRNA Science Sea-pen Transfer RNA tRNA veretillidae |
| title | Complete mitochondrial genome of the sea-pen, Cavernularia obesa (Valenciennes, 1850) (Octocorallia: Veretillidae) |
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