Characteristics and phylogenetic analysis of the complete chloroplast genome of Paeonia japonica (Paeoniaceae)
Paeonia japonica, distributed throughout Asia, is a traditional medicinal herb in Korea, with many potential beneficial effects including pain-relieving, anti-inflammatory, and anti-cancer activities. Despite its high pharmacological value, the genetic information on Paeonia japonica remains limited...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2021-03, Vol.6 (3), p.734-735 |
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| description | Paeonia japonica, distributed throughout Asia, is a traditional medicinal herb in Korea, with many potential beneficial effects including pain-relieving, anti-inflammatory, and anti-cancer activities. Despite its high pharmacological value, the genetic information on Paeonia japonica remains limited. In this study, the chloroplast genome of P. japonica was sequenced using next-generation sequencing (NGS) technology and genome and phylogeny were analyzed using multiple tools. The chloroplast genome of P. japonica was 152,731 bp in length with an inverted repeat region of 26,656 bp, including a large single-copy region of 84,389 bp and a small single copy region of 17,030 bp. The P. japonica chloroplast genome included 113 genes comprising 80 protein-coding genes, 27 tRNA, and 5 rRNA genes. Phylogenetic analysis indicated that P. japonica and P. obovata share a close evolutionary relationship. |
| doi_str_mv | 10.1080/23802359.2020.1860718 |
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Despite its high pharmacological value, the genetic information on Paeonia japonica remains limited. In this study, the chloroplast genome of P. japonica was sequenced using next-generation sequencing (NGS) technology and genome and phylogeny were analyzed using multiple tools. The chloroplast genome of P. japonica was 152,731 bp in length with an inverted repeat region of 26,656 bp, including a large single-copy region of 84,389 bp and a small single copy region of 17,030 bp. The P. japonica chloroplast genome included 113 genes comprising 80 protein-coding genes, 27 tRNA, and 5 rRNA genes. Phylogenetic analysis indicated that P. japonica and P. obovata share a close evolutionary relationship.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2020.1860718</identifier><identifier>PMID: 33763563</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Chloroplast genome ; Chloroplasts ; Genomes ; Herbal medicine ; Inflammation ; Inverted repeat ; Medicinal plants ; Mitogenome Announcement ; Next-generation sequencing ; Paeonia japonica ; phylogenetic tree analysis ; Phylogenetics ; Phylogeny ; rRNA ; tRNA</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2021-03, Vol.6 (3), p.734-735</ispartof><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. 2021</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</rights><rights>2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. This work is licensed under the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/ (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.</rights><rights>2021 The Author(s). 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Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Paeonia japonica, distributed throughout Asia, is a traditional medicinal herb in Korea, with many potential beneficial effects including pain-relieving, anti-inflammatory, and anti-cancer activities. Despite its high pharmacological value, the genetic information on Paeonia japonica remains limited. In this study, the chloroplast genome of P. japonica was sequenced using next-generation sequencing (NGS) technology and genome and phylogeny were analyzed using multiple tools. The chloroplast genome of P. japonica was 152,731 bp in length with an inverted repeat region of 26,656 bp, including a large single-copy region of 84,389 bp and a small single copy region of 17,030 bp. The P. japonica chloroplast genome included 113 genes comprising 80 protein-coding genes, 27 tRNA, and 5 rRNA genes. Phylogenetic analysis indicated that P. japonica and P. obovata share a close evolutionary relationship.</description><subject>Chloroplast genome</subject><subject>Chloroplasts</subject><subject>Genomes</subject><subject>Herbal medicine</subject><subject>Inflammation</subject><subject>Inverted repeat</subject><subject>Medicinal plants</subject><subject>Mitogenome Announcement</subject><subject>Next-generation sequencing</subject><subject>Paeonia japonica</subject><subject>phylogenetic tree analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>rRNA</subject><subject>tRNA</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>ABUWG</sourceid><sourceid>AFKRA</sourceid><sourceid>AZQEC</sourceid><sourceid>BENPR</sourceid><sourceid>CCPQU</sourceid><sourceid>DWQXO</sourceid><sourceid>GNUQQ</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9kktv1DAUhSMEolXpTwBFYlMWU_yIHXuDQCMelSrBAtbWjXM945ETBzsDmn-Pw0yrlgUr2-d-Pva1T1W9pOSaEkXeMq4I40JfM8KKpCRpqXpSnS_6aik8fTA_qy5z3hFCqORtq9vn1RnnreRC8vNqXG8hgZ0x-Tx7m2sY-3raHkLc4IhFKQKEQ_a5jq6et1jbOEwB5zLZhpjiFCDPdYHjgAvyDTCOHuodTGW0UF-dFIuAb15UzxyEjJen8aL68enj9_WX1e3XzzfrD7crKySbV05KpcFSyhkD2VHddKCYIn1PKBXMdVpo3mjoSn8daFuWSnHbcgJNzxrkF9XN0bePsDNT8gOkg4ngzV8hpo2BVLoLaMDqzqFS1oFoXCOAaCcIhfLATQ8dKV7vjl7TvhuwtzjOCcIj08eV0W_NJv4yrRaNoIvB1ckgxZ97zLMZfLYYAowY99kwQQSXjEhd0Nf_oLu4T-UHFoppwjlraaHEkbIp5pzQ3V-GErMExNwFxCwBMaeAlH2vHnZyv-suDgV4fwT86GIa4HdMoTczlDgkl2C0Phv-_zP-AJESytk</recordid><startdate>20210311</startdate><enddate>20210311</enddate><creator>Lim, Seo-Young</creator><creator>Jang, Ji-Hun</creator><creator>Lee, Hyun-Ju</creator><creator>Park, Seong-Sik</creator><creator>Kim, Sun-Ra</creator><creator>Lee, Kyeong-Min</creator><creator>Kim, Ji-Kyung</creator><creator>Park, Ho</creator><creator>Jung, Ho-Kyung</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PIMPY</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope><orcidid>https://orcid.org/0000-0002-0394-036X</orcidid></search><sort><creationdate>20210311</creationdate><title>Characteristics and phylogenetic analysis of the complete chloroplast genome of Paeonia japonica (Paeoniaceae)</title><author>Lim, Seo-Young ; 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Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2021-03-11</date><risdate>2021</risdate><volume>6</volume><issue>3</issue><spage>734</spage><epage>735</epage><pages>734-735</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Paeonia japonica, distributed throughout Asia, is a traditional medicinal herb in Korea, with many potential beneficial effects including pain-relieving, anti-inflammatory, and anti-cancer activities. Despite its high pharmacological value, the genetic information on Paeonia japonica remains limited. In this study, the chloroplast genome of P. japonica was sequenced using next-generation sequencing (NGS) technology and genome and phylogeny were analyzed using multiple tools. The chloroplast genome of P. japonica was 152,731 bp in length with an inverted repeat region of 26,656 bp, including a large single-copy region of 84,389 bp and a small single copy region of 17,030 bp. 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| source | Taylor & Francis Open Access; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
| subjects | Chloroplast genome Chloroplasts Genomes Herbal medicine Inflammation Inverted repeat Medicinal plants Mitogenome Announcement Next-generation sequencing Paeonia japonica phylogenetic tree analysis Phylogenetics Phylogeny rRNA tRNA |
| title | Characteristics and phylogenetic analysis of the complete chloroplast genome of Paeonia japonica (Paeoniaceae) |
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