Characterization and phylogenetic analysis of the complete mitochondrial genome of Pseudothemis zonata (Odonata: Anisoptera: Libellulidae)
Pseudothemis zonata is a commonly seen dragonfly with a big yellow or white ringlike spot on the third and fourth segments of its abdomen. In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of P. zonata. This mitogenome was 15,434 bp long and encoded 13 protein-c...
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| Veröffentlicht in: | Mitochondrial DNA. Part B. Resources 2021-01, Vol.6 (1), p.24-25 |
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| creator | Wang, Ying Du, Yimin Song, Xiang Huang, Aijun |
| description | Pseudothemis zonata is a commonly seen dragonfly with a big yellow or white ringlike spot on the third and fourth segments of its abdomen. In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of P. zonata. This mitogenome was 15,434 bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA unit genes (rRNAs). Gene order was conserved and identical to most other previously sequenced Libellulidae dragonflies. The whole mitogenome exhibited heavy AT nucleotide bias (74.6%). Most PCGs of P. zonata have the conventional start codons ATN (six ATG, three ATT, and two ATC), with the exception of cox1 and nad1 (TTG). Except for four genes (cox1, cox2, cox3, and nad5) end with the incomplete stop codon T−, all other PCGs terminated with the stop codon TAA or TAG. Phylogenetic analysis showed that P. zonata got together with Brachythemis contaminata with high support value, and the relationships ((Brachythemis + Psolodesmus) + ((Hydrobasileus + Trigomphus) + (Orthetrum + Acisoma))) were supported in Libellulidae. |
| doi_str_mv | 10.1080/23802359.2020.1839369 |
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In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of P. zonata. This mitogenome was 15,434 bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA unit genes (rRNAs). Gene order was conserved and identical to most other previously sequenced Libellulidae dragonflies. The whole mitogenome exhibited heavy AT nucleotide bias (74.6%). Most PCGs of P. zonata have the conventional start codons ATN (six ATG, three ATT, and two ATC), with the exception of cox1 and nad1 (TTG). Except for four genes (cox1, cox2, cox3, and nad5) end with the incomplete stop codon T−, all other PCGs terminated with the stop codon TAA or TAG. Phylogenetic analysis showed that P. zonata got together with Brachythemis contaminata with high support value, and the relationships ((Brachythemis + Psolodesmus) + ((Hydrobasileus + Trigomphus) + (Orthetrum + Acisoma))) were supported in Libellulidae.</description><identifier>ISSN: 2380-2359</identifier><identifier>EISSN: 2380-2359</identifier><identifier>DOI: 10.1080/23802359.2020.1839369</identifier><identifier>PMID: 33521259</identifier><language>eng</language><publisher>England: Taylor & Francis</publisher><subject>Anisoptera ; Codons ; Cyclooxygenase-2 ; Gene order ; Genomes ; Libellulidae ; Mitochondria ; mitochondrial genome ; Mitogenome Announcement ; phylogenetic analysis ; Phylogenetics ; Phylogeny ; Pseudothemis zonata ; rRNA ; Stop codon ; Transfer RNA ; Yellow spot</subject><ispartof>Mitochondrial DNA. Part B. Resources, 2021-01, Vol.6 (1), p.24-25</ispartof><rights>2021 The Author(s). 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Published by Informa UK Limited, trading as Taylor & Francis Group. 2021 The Author(s)</rights><lds50>peer_reviewed</lds50><oa>free_for_read</oa><woscitedreferencessubscribed>false</woscitedreferencessubscribed><cites>FETCH-LOGICAL-c463t-b138b95c841d7c228948101e6bbcbc5a85b042f90ef0f9584cf67c3f8a72089b3</cites></display><links><openurl>$$Topenurl_article</openurl><openurlfulltext>$$Topenurlfull_article</openurlfulltext><thumbnail>$$Tsyndetics_thumb_exl</thumbnail><linktopdf>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808373/pdf/$$EPDF$$P50$$Gpubmedcentral$$Hfree_for_read</linktopdf><linktohtml>$$Uhttps://www.ncbi.nlm.nih.gov/pmc/articles/PMC7808373/$$EHTML$$P50$$Gpubmedcentral$$Hfree_for_read</linktohtml><link.rule.ids>230,314,723,776,780,860,881,2096,27479,27901,27902,53766,53768,59116,59117</link.rule.ids><backlink>$$Uhttps://www.ncbi.nlm.nih.gov/pubmed/33521259$$D View this record in MEDLINE/PubMed$$Hfree_for_read</backlink></links><search><creatorcontrib>Wang, Ying</creatorcontrib><creatorcontrib>Du, Yimin</creatorcontrib><creatorcontrib>Song, Xiang</creatorcontrib><creatorcontrib>Huang, Aijun</creatorcontrib><title>Characterization and phylogenetic analysis of the complete mitochondrial genome of Pseudothemis zonata (Odonata: Anisoptera: Libellulidae)</title><title>Mitochondrial DNA. Part B. Resources</title><addtitle>Mitochondrial DNA B Resour</addtitle><description>Pseudothemis zonata is a commonly seen dragonfly with a big yellow or white ringlike spot on the third and fourth segments of its abdomen. In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of P. zonata. This mitogenome was 15,434 bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA unit genes (rRNAs). Gene order was conserved and identical to most other previously sequenced Libellulidae dragonflies. The whole mitogenome exhibited heavy AT nucleotide bias (74.6%). Most PCGs of P. zonata have the conventional start codons ATN (six ATG, three ATT, and two ATC), with the exception of cox1 and nad1 (TTG). Except for four genes (cox1, cox2, cox3, and nad5) end with the incomplete stop codon T−, all other PCGs terminated with the stop codon TAA or TAG. Phylogenetic analysis showed that P. zonata got together with Brachythemis contaminata with high support value, and the relationships ((Brachythemis + Psolodesmus) + ((Hydrobasileus + Trigomphus) + (Orthetrum + Acisoma))) were supported in Libellulidae.</description><subject>Anisoptera</subject><subject>Codons</subject><subject>Cyclooxygenase-2</subject><subject>Gene order</subject><subject>Genomes</subject><subject>Libellulidae</subject><subject>Mitochondria</subject><subject>mitochondrial genome</subject><subject>Mitogenome Announcement</subject><subject>phylogenetic analysis</subject><subject>Phylogenetics</subject><subject>Phylogeny</subject><subject>Pseudothemis zonata</subject><subject>rRNA</subject><subject>Stop codon</subject><subject>Transfer RNA</subject><subject>Yellow spot</subject><issn>2380-2359</issn><issn>2380-2359</issn><fulltext>true</fulltext><rsrctype>article</rsrctype><creationdate>2021</creationdate><recordtype>article</recordtype><sourceid>0YH</sourceid><sourceid>8G5</sourceid><sourceid>BENPR</sourceid><sourceid>GUQSH</sourceid><sourceid>M2O</sourceid><sourceid>DOA</sourceid><recordid>eNp9ks9uEzEQxlcIRKvSRwCtxKUcUvxnvWtzQK2iApUilQOcrbHXThx518H2gtJH4KnrNGnVcuDk0cxvvvHYX1W9xegcI44-EsoRoUycE0RKilNBW_GiOt7lZ7vCyyfxUXWa0hohhFvadaJ7XR1RyggmTBxXf-criKCzie4WsgtjDWNfb1ZbH5ZmNNnpkgC_TS7VwdZ5ZWodho032dSDy0GvwthHB74ueBjMDvqezNSHgg6l6TaMkKE-u-nvg0_15ehS2JSBJV44ZbyfvOvBfHhTvbLgkzk9nCfVzy9XP-bfZoubr9fzy8VMNy3NM4UpV4Jp3uC-04Rw0XCMsGmV0koz4EyhhliBjEVWMN5o23aaWg4dQVwoelJd73X7AGu5iW6AuJUBnLxPhLiUEMvi3khBWWtxYwRuoNGNAd0TzrUSWihFkChan_dam0kNptdmzBH8M9HnldGt5DL8lh1HnHa0CJwdBGL4NZmUZXk0XR4FRhOmJElT9mwZR6ig7_9B12GK5XMKxTDnLaOUFIrtKR1DStHYx8tgJHfmkQ_mkTvzyIN5St-7p5s8dj1YpQAXe8CNNsQB_oToe5mhOCXaCKN2SdL_z7gDnL_WJw</recordid><startdate>20210108</startdate><enddate>20210108</enddate><creator>Wang, Ying</creator><creator>Du, Yimin</creator><creator>Song, Xiang</creator><creator>Huang, Aijun</creator><general>Taylor & Francis</general><general>Taylor & Francis Ltd</general><general>Taylor & Francis Group</general><scope>0YH</scope><scope>NPM</scope><scope>AAYXX</scope><scope>CITATION</scope><scope>3V.</scope><scope>7XB</scope><scope>8FD</scope><scope>8FK</scope><scope>8G5</scope><scope>ABUWG</scope><scope>AFKRA</scope><scope>AZQEC</scope><scope>BENPR</scope><scope>CCPQU</scope><scope>DWQXO</scope><scope>FR3</scope><scope>GNUQQ</scope><scope>GUQSH</scope><scope>M2O</scope><scope>MBDVC</scope><scope>P64</scope><scope>PHGZM</scope><scope>PHGZT</scope><scope>PIMPY</scope><scope>PKEHL</scope><scope>PQEST</scope><scope>PQQKQ</scope><scope>PQUKI</scope><scope>PRINS</scope><scope>Q9U</scope><scope>RC3</scope><scope>7X8</scope><scope>5PM</scope><scope>DOA</scope></search><sort><creationdate>20210108</creationdate><title>Characterization and phylogenetic analysis of the complete mitochondrial genome of Pseudothemis zonata (Odonata: Anisoptera: Libellulidae)</title><author>Wang, Ying ; Du, Yimin ; Song, Xiang ; Huang, Aijun</author></sort><facets><frbrtype>5</frbrtype><frbrgroupid>cdi_FETCH-LOGICAL-c463t-b138b95c841d7c228948101e6bbcbc5a85b042f90ef0f9584cf67c3f8a72089b3</frbrgroupid><rsrctype>articles</rsrctype><prefilter>articles</prefilter><language>eng</language><creationdate>2021</creationdate><topic>Anisoptera</topic><topic>Codons</topic><topic>Cyclooxygenase-2</topic><topic>Gene order</topic><topic>Genomes</topic><topic>Libellulidae</topic><topic>Mitochondria</topic><topic>mitochondrial genome</topic><topic>Mitogenome Announcement</topic><topic>phylogenetic analysis</topic><topic>Phylogenetics</topic><topic>Phylogeny</topic><topic>Pseudothemis zonata</topic><topic>rRNA</topic><topic>Stop codon</topic><topic>Transfer RNA</topic><topic>Yellow spot</topic><toplevel>peer_reviewed</toplevel><toplevel>online_resources</toplevel><creatorcontrib>Wang, Ying</creatorcontrib><creatorcontrib>Du, Yimin</creatorcontrib><creatorcontrib>Song, Xiang</creatorcontrib><creatorcontrib>Huang, Aijun</creatorcontrib><collection>Taylor & Francis Open Access</collection><collection>PubMed</collection><collection>CrossRef</collection><collection>ProQuest Central (Corporate)</collection><collection>ProQuest Central (purchase pre-March 2016)</collection><collection>Technology Research Database</collection><collection>ProQuest Central (Alumni) (purchase pre-March 2016)</collection><collection>Research Library (Alumni Edition)</collection><collection>ProQuest Central (Alumni Edition)</collection><collection>ProQuest Central UK/Ireland</collection><collection>ProQuest Central Essentials</collection><collection>ProQuest Central</collection><collection>ProQuest One Community College</collection><collection>ProQuest Central Korea</collection><collection>Engineering Research Database</collection><collection>ProQuest Central Student</collection><collection>Research Library Prep</collection><collection>Research Library</collection><collection>Research Library (Corporate)</collection><collection>Biotechnology and BioEngineering Abstracts</collection><collection>ProQuest Central (New)</collection><collection>ProQuest One Academic (New)</collection><collection>Publicly Available Content Database</collection><collection>ProQuest One Academic Middle East (New)</collection><collection>ProQuest One Academic Eastern Edition (DO NOT USE)</collection><collection>ProQuest One Academic</collection><collection>ProQuest One Academic UKI Edition</collection><collection>ProQuest Central China</collection><collection>ProQuest Central Basic</collection><collection>Genetics Abstracts</collection><collection>MEDLINE - Academic</collection><collection>PubMed Central (Full Participant titles)</collection><collection>DOAJ Directory of Open Access Journals</collection><jtitle>Mitochondrial DNA. Part B. Resources</jtitle></facets><delivery><delcategory>Remote Search Resource</delcategory><fulltext>fulltext</fulltext></delivery><addata><au>Wang, Ying</au><au>Du, Yimin</au><au>Song, Xiang</au><au>Huang, Aijun</au><format>journal</format><genre>article</genre><ristype>JOUR</ristype><atitle>Characterization and phylogenetic analysis of the complete mitochondrial genome of Pseudothemis zonata (Odonata: Anisoptera: Libellulidae)</atitle><jtitle>Mitochondrial DNA. Part B. Resources</jtitle><addtitle>Mitochondrial DNA B Resour</addtitle><date>2021-01-08</date><risdate>2021</risdate><volume>6</volume><issue>1</issue><spage>24</spage><epage>25</epage><pages>24-25</pages><issn>2380-2359</issn><eissn>2380-2359</eissn><abstract>Pseudothemis zonata is a commonly seen dragonfly with a big yellow or white ringlike spot on the third and fourth segments of its abdomen. In this study, we sequenced and analyzed the complete mitochondrial genome (mitogenome) of P. zonata. This mitogenome was 15,434 bp long and encoded 13 protein-coding genes (PCGs), 22 transfer RNA genes (tRNAs), and 2 ribosomal RNA unit genes (rRNAs). Gene order was conserved and identical to most other previously sequenced Libellulidae dragonflies. The whole mitogenome exhibited heavy AT nucleotide bias (74.6%). Most PCGs of P. zonata have the conventional start codons ATN (six ATG, three ATT, and two ATC), with the exception of cox1 and nad1 (TTG). Except for four genes (cox1, cox2, cox3, and nad5) end with the incomplete stop codon T−, all other PCGs terminated with the stop codon TAA or TAG. Phylogenetic analysis showed that P. zonata got together with Brachythemis contaminata with high support value, and the relationships ((Brachythemis + Psolodesmus) + ((Hydrobasileus + Trigomphus) + (Orthetrum + Acisoma))) were supported in Libellulidae.</abstract><cop>England</cop><pub>Taylor & Francis</pub><pmid>33521259</pmid><doi>10.1080/23802359.2020.1839369</doi><tpages>2</tpages><oa>free_for_read</oa></addata></record> |
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| source | Taylor & Francis Open Access; DOAJ Directory of Open Access Journals; Elektronische Zeitschriftenbibliothek - Frei zugängliche E-Journals; PubMed Central |
| subjects | Anisoptera Codons Cyclooxygenase-2 Gene order Genomes Libellulidae Mitochondria mitochondrial genome Mitogenome Announcement phylogenetic analysis Phylogenetics Phylogeny Pseudothemis zonata rRNA Stop codon Transfer RNA Yellow spot |
| title | Characterization and phylogenetic analysis of the complete mitochondrial genome of Pseudothemis zonata (Odonata: Anisoptera: Libellulidae) |
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